Dr. Juraj Simunić
Ruđer Bošković Institute
Bijenička 54
HR-10000 Zagreb
Publications
Books and book chapters
Book chapters
Juretić, D., Tossi, A., Kamech, N., Ilić, N., Bojović, V., Novković, M., Simunić, J., Petrov, D., Lučić, B., Miljak, M., Ivica, J., Kozić, M. & Vukičević, D. (2013) From Data Collecting to Web servers for Automatic Design of Peptide Antibiotics. U: Paar, V. (ur.) Bioinformatics and biological physics : proceedings of the scientific meeting. Zagreb, Hrvatska akademija znanosti i umjetnosti, str. 63-78. (https://www.bib.irb.hr/680096).
Journal articles
Scientific and review papers
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Juretić, D., Simunić, J. & Bonačić Lošić, Ž. (2019) Maximum Entropy Production Theorem for Transitions between Enzyme Functional States and Its Applications. Entropy (Basel. Online), 21 (8), 743, 20 doi:10.3390/e21080743.
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Juretić, D. & Simunić, J. (2019) Design of α-helical antimicrobial peptides with a high selectivity index. Expert Opinion on Drug Discovery, 14 (10), 1053-1063 doi:10.1080/17460441.2019.1642322.
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Juretić, D., Bonačić Lošić, Ž., Kuić, D., Simunić, J. & Dobovišek, A. (2019) The maximum entropy production requirement for proton transfers enhances catalytic efficiency for β-lactamases. Biophysical chemistry, 244, 11-21 doi:10.1016/j.bpc.2018.10.004.
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Novak, M., Polak, B., Simunić, J., Boban, Z., Kuzmić, B., Thomae, A., Tolić, I. & Pavin, N. (2018) The mitotic spindle is chiral due to torques within microtubule bundles. Nature Communications, 9, 3571, 10 doi:10.1038/s41467-018-06005-7.
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Rončević, T., Gajski, G., Ilić, N., Goić-Barišić, I., Tonkić, M., Zoranić, L., Simunić, J., Benincasa, M., Mijaković, M., Tossi, A. & Juretić, D. (2017) PGLa-H tandem-repeat peptides active against multidrug resistant clinical bacterial isolates. Biochimica et biophysica acta. Biomembranes, 1859 (2), 228-237 doi:10.1016/j.bbamem.2016.11.011.
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Šamanić, I., Cvitanić, R., Simunić, J. & Puizina, J. (2016) Arabidopsis thalianaMRE11 is essential for activation of cell cycle arrest, transcriptional regulation and DNA repair upon the induction of double-stranded DNA breaks. Plant Biology, 18 (4), 681-694 doi:10.1111/plb.12453.
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Simunić, J. & Tolić, I. (2016) Mitotic Spindle Assembly : Building the Bridge between Sister K-Fibers. Trends in biochemical sciences, 41 (10), 824-833 doi:10.1016/j.tibs.2016.07.004.
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Šamanić, I., Cvitanić, R., Simunić, J. & Puizina, J. (2016) Arabidopsis thaliana MRE11 is essential for activation of the cell cycle arrest, transcriptional regulation and the DNA repair upon the induction of double- stranded DNA breaks. Plant biology, 18 (4), 681-694 doi:10.1111/plb.12453.
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Kozić, M., Vukičević, D., Simunić, J., Rončević, T., Antcheva, N., Tossi, A. & Juretić, D. (2015) Predicting the Minimal Inhibitory Concentration for Antimicrobial Peptides with Rana-Box Domain. Journal of chemical information and modeling, 55 (10), 2275-2287 doi:10.1021/acs.jcim.5b00161.
doi Simunić, J., Petrov, D., Bouceba, T., Kamech, N., Benincasa, M. & Juretić, D. (2014) Trichoplaxin - a new membrane-active antimicrobial peptide from placozoan cDNA.. Biochimica et biophysica acta. Biomembranes, 1838, 1430-1438.
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Simunić, J., Petrov, D., Bouceba, T., Kamech, N., Benincasa, M. & Juretić, D. (2014) Trichoplaxin — A new membrane-active antimicrobial peptide from placozoan cDNA. Biochimica et biophysica acta. Biomembranes, 1838 (5), 1430-1438 doi:10.1016/j.bbamem.2014.02.003.
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Šamanić, I., Simunić, J., Riha, K. & Puizina, J. (2013) Evidence for Distinct Functions of MRE11 in Arabidopsis Meiosis. PLoS One, 8 (10), 1-12 doi:10.1371/journal.pone.0078760.
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Kamech, N., Vukičević, D., Ladram, A., Piesse, C., Vasseur, J., Bojović, V., Simunić, J. & Juretić, D. (2012) Improving the Selectivity of Antimicrobial Peptides from Anuran Skin. Journal of chemical information and modeling, 52 (12), 3341-3351 doi:10.1021/ci300328y.
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Novković, M., Simunić, J., Bojović, V., Tossi, A. & Juretić, D. (2012) DADP: the database of anuran defense peptides. Bioinformatics, 28 (10), 1406-1407 doi:10.1093/bioinformatics/bts141.
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Kamech, N., Simunić, J., Sen, J., Francis, S., Tabitsika, M. & Soyez, D. (2007) Evidence for an angiotensin-converting enzyme (ACE) polymorphism in the crayfish Astacus leptodactylus. Peptides, 28 (7), 1368-1374 doi:10.1016/j.peptides.2007.06.009.
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