Published: 12/03/2015 9:20 am

Next Generation Sequencing Techniques and Software Applications

IV Bioinformatics workshop in Galaxy Training Network, organized by Centre for Informatics and Computing, RBI

Next Generation Sequencing Techniques and Software Applications

A 2-day workshop covering a spread of topics in biology, genomics, and life science. The first day will present a set of lectures and the second day will host three hands-on workshop sessions.

IV BW Workshop
 

Who is this for?
Researchers, postdocs and students interested in Next Generation Sequencing, bioinformatics, data analysis, software tools, and computer programming.

The objectives
Participants will get a broad overview of topics covering multiple facets of bioinformatics, genomics, and life science. The workshop will cover techniques as well as specific tools, including Galaxy and Ensembl. The first day will present a set of lectures and the second day will host two hands-on workshop sessions.

When: 5-6 October, 2015

Where: Ruđer Bošković Institute (RBI), Bijenička c. 54, Zagreb

Tentative Programme, Day 1
Monday October 5, 2015
Location: Plava dvorana (Blue Room), 3rd wing
Lectures:
09:00 - 09:05 Welcome and overview
Enis Afgan (RBI)
09:05 - 09:30 A case for cloud computing in bioinformatics
Enis Afgan (RBI, Croatia)
09:30 - 10:00 Towards supporting accessible, reproducible, and transparent research
in the life sciences
Yvan Le Bras (IRISA-INRIA, France)
10:00 - 10:30 To be announced
Sebastian Schoenherr, Lukas Forer, Hansi Weissensteiner (MUI, Austria)
10:30 - 11:00 Coffee break and poster section
11:00 - 11:30 Mapping the epigenome: an application in cancer genomics
Rosa Karlić (PMF, Zagreb)
11:30 - 12:00 Characterization of repeatom from NGS data using RepeatExplorer
Petr Novak (CAS - Institute of Microbiology, Czech Republic)
12:00 - 12:30 Virtual Screening with Galaxy: LiSIs perspective
Christos Kannas (IS - The University of Sheffield, UK)
12:30 - 13:30 Lunch break
13:30 - 14:00 Data intensive biology and data provenance graphs
Gianluigi Zanetti (CRS4, Italy)
14:30 - 15:00 To be announced
15:00 - 15:30 De novo genome assembly from 3rd generation sequencers data
Ivan Sović/Davor Davidović (RBI, Croatia)
   
   
Tentative Programme, Day 2
Tuesday October 6, 2015
Location: Computer classroom, Library, 5th wing
9:30 - 11:00 Imputation server/mtDNA server
Sebastian Schoenherr, Lukas Forer, Hansi Weissensteiner (MUI, Austria)
11:00 - 11:15  Coffee break
11:15 - 12:45 NGS 101 with Galaxy
Enis Afgan, Davor Davidović (RBI, Croatia)
12:45 - 14:00 Lunch break
14:00 - 15:30 Introductory Python programming for biologists
Enis Afgan, Davor Davidović (RBI, Croatia)
Staff

CIR staff 2010

Tehnički fakultet Rijeka

Scientific cooperation

FER

Scientific cooperation

GRF

Scientific cooperation

FESB

Scientific cooperation

FACULTY OF ELECTRICAL ENGINEERING (ETFOS)

Scientific cooperation

ETH Zurich

Scientific cooperation

MTA SZTAKI

Scientific cooperation

Institut "Jožef Stefan"

Scientific cooperation

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MZOS

Project Cooperation

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