Projects since 2003

Coordinator

2002. – 2004. bilateral project with Germany (R.C. Wade), 'Vorhersagen zur Selectivität, Regulierung und Inhibition von Enzymen durch COMBINE Analyse',

2002. – 2003. bilateral project with Austria (M. Ramek), 'Combinedab initio, molecular mechanics, molecular dynamics and QSAR approach to plant hormone auxins'.

2004. – 2005. bilateral project with Austria (M. Ramek), 'Combined application of quantum mechanics and molecular mechanics methods in study of molecules important in biology and biotechnology '. 

2005. – 2006. bilateral project with Slovenia (D. Janežič) 'Computational simulations of protein structure and dynamics'.

2007. – 2008. bilateral project with Slovenia (D. Janežič) 'Study of protein structure and dynamics by computational methods '.

'Proučavanje strukture i dinamike proteina računalnim metodama'.

2008. – 2010. bilateral project with Austria (Grit Daniele Stragaz), 'Reactivity of metal centres in proteins - theoretical study '.

2009 – 2010. bilateral project with Slovenia (Milan Hodošček), 'Theoretical study of reactivity of metal centers in proteins'

2007 – 2013. MZOŠ project ‘Computational study of bio-macromolecules and development of new algorithms’ (098-1191344-2860)

2012 – 2015 'Alexander von Humboldt, Research Group Linkage' programm: 'Study of plant enzymes from metallopeptidase families M20 and M49’

2014 – 2017 HRZZ project: 'Flexibility, activity and structure correlations in the dipeptidyl peptidase III family' (01.07.2014-31.10.2017)

2016 – 2017 Bilateral project with Austria (Karl Gruber, TU, Graz), 'AnInterdisciplinary Study on Atypical Dipeptidyl Peptidases III (DPPs III) Structure and Dynamics '.

2018 - HRZZ project: 'Biological relevance of dipeptidyl peptidase III and its impact on human health DPP3BioRe’, in process of negotiation.'

• Investigating Keap1 Protein Interactions to Uncover New Therapeutic Strategies - Keap1-InterThera

  05.12.2025 - 04.12.2028 | 199,985.00 EUR

  CroRISIRB

• Dipeptidyl peptidase III interaction with SH2 domain-containing protein 3C – possible link between oxidative stress response and cell migration - OxMiLink

  01.03.2021 - 28.02.2025 | 128,873.85 EUR

  CroRISIRB

• Investigation of the peptidase activity of human DPP III against tynorphin - computational and experimental study

  23.11.2020 - 22.11.2021 | 4,000.00 HRK

  CroRISIRB

• Biological relevance of dipeptidyl peptidase III and its impact on human health - DOK - DPP3BioRe

  23.08.2019 - 23.02.2024 | 0.00 EUR

  CroRISIRB

• Molecular recognition of DNA:RNA hybrid and multistranded structures in bioanalytical and in vitro systems - DNARNAHyB-MolBio

  01.10.2018 - 31.01.2023 | 127,015.73 EUR

  CroRISIRB

• Biological relevance of dipeptidyl peptidase III and its impact on human health - DPP3BioRe

  01.10.2018 - 30.09.2022 | 132,722.81 EUR

  CroRISIRB

• Flexibility, activity and structure correlations in the dipeptidyl peptidase III family - FlAcS

  01.07.2014 - 30.06.2017 | 86,741.12 EUR

  CroRISIRB

• Computational study of bio-macromolecules and development of new algorithms

  01.01.2007 - 01.01.2009 | 0.00 EUR

  CroRISIRB

• Transition metal complexes with bioligands: modelling and interaction

  01.01.2007 - 31.12.2014 | 0.00 EUR

  CroRISIRB

Dokmanić I., Šikić M., Tomić S.*, Correlation between the metal ion type, coordination number and the amino acid residues involved in the coordination, Acta Cryst. D, D64 (2008), 257-263.

Tomić, A; Gonzalez, M.; Tomić, S.* The large scale conformational change of the human DPP III – substrate prefers the "closed" form, Journal of chemical information and modeling. 52 (2012); 1583-1594.

Tomić, A. and Tomić, S.* Hunting the human DPP III active conformation: combined thermodynamic and QM/MM calculations, Dalton transactions. 43 (2014); 15503-15514.

Tomić A., Kovačević B.* and Tomić S.*, Concerted nitrogen inversion and hydrogen bonding to Glu451 are responsible for protein-controlled suppression of the reverse reaction in the human DPP III, Physical Chemistry Chemical Physics (2016) 18; 27245-27256.

Sabljić I, Tomin M, Matovina M, Sučec I, Tomašić Paić A, Tomić A, et al. The first dipeptidyl peptidase III from a thermophile: Structural basis for thermal stability and reduced activity. PLoS ONE 13(2) (2018), e0192488. https://doi.org/10.1371/journal.pone.0192488.

Kazazić S., Karačić Z., Sabljić I., Agić D., Tomin M., Abramić M., Dadlez M, Tomić A., Tomić S. Conservation of the conformational dynamics and ligand binding within M49 enzyme family. RSC Adv. 8 (2018), 13310-13322.

Tomić A., Horvat G., Ramek M., Agić D., Brkić H., Tomić S.* New zinc ion parameters suitable for classical MD simulations of zinc metallo-peptidases. Journal of Chemical Information and Modeling (2019) DOI: 10.1021/acs.jcim.9b00235. 

Book of abstracts

• The 2nd Opatija Meeting on Computational Solutions in Life Sciences : Book of Abstracts / Babić, Darko ; Došlić, Nadja ; Smith, David et al. (ur.). Zagreb: Institute of Computational Life Sciences (ICLS), 2007

Conference proceedings

• The 5th Central European Conference - Chemistry towards Biology / Abramić, Marija ; Maksić, Zvonimir ; Salopek-Sondi, Branka et al. (ur.). Zagreb: Institut Ruđer Bošković, 2010

• The 3rd Adriatic Meeting on Computational Solutions in Life Sciences : book of abstracts / Babić, Darko ; Došlić, Nadja ; Smith, David et al. (ur.). Zagreb: Institute of Computational Life Sciences (ICLS), 2009

Original scientific paper

• Tomić, Sanja | Enantioselectivity of Burkholderia cepacia lipase towards primary and secondary alcohols: molecular modelling and 3D QSAR analysis // Designing drugs and crop protectants: processes, problems and solutions. | Oxford: Wiley-Blackwell, 2003. str. 326-328-x

• Tomić, Sanja ; Nillson, Lennart ; Wade, Rebecca | Combine and Free-Wilson QSAR analysis of nuclear receptor-DNA binding // Molecular Modeling and Prediction of Bioactivity. | New York (NY): Kluwer Academic Publishers ; Plenum Publishers, 2000. str. 269-270-x

Original scientific paper

• Filić, Želimira; Bielen, Ana; Šarić, Ela; Ćehić, Mirsada; Crnolatac, Ivo; Tomić, Sanja; Vujaklija, Dušica; Abramić, Marija | Evaluation of the Structure–Function Relationship of SGNH Lipase from Streptomyces rimosus by Site-Directed Mutagenesis and Computational Approach // International journal of molecular sciences, 25 (2024), 1; 595, 17. doi: 10.3390/ijms25010595

  doifulir.irb.hrwww.mdpi.com

• Agić, Dejan; Karnaš, Maja; Tomić, Sanja; Komar, Mario; Karačić, Zrinka; Rastija, Vesna; Bešlo, Drago; Šubarić, Domagoj; Molnar, Maja | Experimental and computational evaluation of dipeptidyl peptidase III inhibitors based on quinazolinone-Schiff's bases // Journal of biomolecular structure & dynamics, 41 (2023), 16; 7567-7581. doi: 10.1080/07391102.2022.2123044

  doiwww.tandfonline.com

• Matovina, Mihaela; Tomašić Paić, Ana; Tomić, Sanja; Brkić, Hrvoje; Horvat, Lucija; Barbarić, Lea; Filić, Vedrana; Pinterić, Marija; Jurić, Snježana; Kussayeva, Akmaral | Identification of SH2 Domain-Containing Protein 3C as a Novel, Putative Interactor of Dipeptidyl Peptidase 3 // International journal of molecular sciences, 24 (2023), 18; 14178, 19. doi: 10.3390/ijms241814178

  doiwww.mdpi.comfulir.irb.hr

• Matić, Antonia; Šupljika, Filip; Brkić, Hrvoje; Jurasović, Jasna; Karačić, Zrinka; Tomić, Sanja | Identification of an Additional Metal-Binding Site in Human Dipeptidyl Peptidase III // International journal of molecular sciences, 24/2023 (2023), 16; 1-23. doi: 10.3390/ijms241612747

  doiwww.mdpi.comfulir.irb.hr

• Tomić, Antonija ; Karačić, Zrinka ; Tomić, Sanja | Influence of Mutations of Conserved Arginines on Neuropeptide Binding in the DPP III Active Site // Molecules, 28 (2023), 4; 1976, 17. doi: 10.3390/molecules28041976

  doiwww.mdpi.comfulir.irb.hr

• Karačić, Zrinka ; Šupljika, Filip ; Tomić, Antonija ; Brkljačić, Lidija ; Tomašić Paić, Ana ; Ćehić, Mirsada ; Tomić, Sanja | Neuropeptides, substrates and inhibitors of human dipeptidyl peptidase III, experimental and computational study — A new substrate identified // International journal of biological macromolecules, 220 (2022), 1390-1401. doi: 10.1016/j.ijbiomac.2022.09.119

  doiwww.sciencedirect.comfulir.irb.hr

• Matić, Sara ; Tomašić Paić, Ana ; Sobočanec, Sandra ; Pinterić, Marija ; Pipalović, Goran ; Martinčić, Monika ; Matovina, Mihaela ; Tomić, Sanja | Interdisciplinary study of the effects of dipeptidyl-peptidase III cancer mutations on the KEAP1-NRF2 signaling pathway // International journal of molecular sciences, 23 (2022), 4; 1994, 15. doi: 10.3390/ijms23041994

  doiwww.mdpi.comwww.ncbi.nlm.nih.govfulir.irb.hr

• Zonjić, Iva ; Tumir, Lidija-Marija ; Crnolatac, Ivo ; Šupljika, Filip ; Racané, Livio ; Tomić, Sanja ; Radić Stojković, Marijana | Recognition of ATT Triplex and DNA:RNA Hybrid Structures by Benzothiazole Ligands // Biomolecules, 12 (2022), 3; 1600173, 20. doi: 10.3390/biom12030374

  doiwww.mdpi.comdoi.orgfulir.irb.hr

• Tomić, Antonija ; Tomić, Sanja | Demystifying DPP III Catalyzed Peptide Hydrolysis— Computational Study of the Complete Catalytic Cycle of Human DPP III Catalyzed Tynorphin Hydrolysis // International journal of molecular sciences, 23 (2022), 3; 1858, 24. doi: 10.3390/ijms23031858

  doiwww.mdpi.comdoi.orgfulir.irb.hr

• Lončar, Borka ; Perin, Nataša ; Mioč, Marija ; Boček, Ida ; Grgić, Lea ; Kralj, Marijeta ; Tomić, Sanja ; Radić Stojković, Marijana ; Hranjec, Marijana | Novel amino substituted tetracyclic imidazo[4,5-b]pyridine derivatives: Design, synthesis, antiproliferative activity and DNA/RNA binding study // European journal of medicinal chemistry, 217 (2021), 113342, 18. doi: 10.1016/j.ejmech.2021.113342

  doiwww.sciencedirect.comdx.doi.org

• Matić, Sara ; Kekez, Ivana ; Tomin, Marko ; Bogár, Ferenc ; Šupljika, Filip ; Kazazić, Saša ; Hanić, Maja ; Jha, Shalinee ; Brkić, Hrvoje ; Bourgeois, Benjamin et al. | Binding of dipeptidyl peptidase III to the oxidative stress cell sensor Kelch-like ECH- associated protein 1 is a two-step process // Journal of biomolecular structure & dynamics, 39 (2021), 18; 6870-6881. doi: 10.1080/07391102.2020.1804455

  doiwww.tandfonline.com

• Ferger, Matthias ; Ban, Željka ; Krošl, Ivona ; Tomić, Sanja ; Dietrich, Lena ; Lorenzen, Sabine ; Rauch, Florian ; Sieh, Daniel ; Friedrich, Alexandra ; Griesbeck, Stefaine et al. | Bis(phenylethynyl)arene Linkers in Tetracationic Bis-triarylborane Chromophores Control Fluorimetric and Raman Sensing of Various DNAs and RNAs // Chemistry : a European journal, 27 (2021), 16; 5142-5159. doi: 10.1002/chem.202005141

  doichemistry-europe.onlinelibrary.wiley.comdoi.orgfulir.irb.hr

• Trnski, Diana ; Sabol, Maja ; Tomić, Sanja ; Štefanac, Ivan ; Mrčela, Milanka ; Musani, Vesna ; Rinčić, Nikolina ; Kurtović, Matea ; Petrić, Tina ; Levanat, Sonja et al. | SHH-N non-canonically sustains androgen receptor activity in androgen-independent prostate cancer cells // Scientific reports, 11 (2021), 1; 14880, 11. doi: 10.1038/s41598-021-93971-6

  doiwww.nature.comdoi.orgfulir.irb.hr

• Agić, Dejan ; Karnaš, Maja ; Šubarić, Domagoj ; Lončarić, Melita ; Tomić, Sanja ; Karačić, Zrinka ; Bešlo, Drago ; Rastija, Vesna ; Molnar, Maja ; Popović, Boris M. et al. | Coumarin derivatives act as novel inhibitors of human dipeptidyl peptidase III: combined in vitro and in silico study // Pharmaceuticals, 14 (2021), 6; 540, 19. doi: 10.3390/ph14060540

  doiwww.mdpi.comfulir.irb.hr

• Tomić, Antonija ; Brkić, Hrvoje ; Matić, Antonia ; Tomić, Sanja | Unravelling the inhibitory zinc ion binding site and the metal exchange mechanism in human DPP III // PCCP. Physical chemistry chemical physics, 23 (2021), 13267-13275. doi: 10.1039/D1CP01302E

  doipubs.rsc.orgdoi.org

• Ban, Željka ; Karačić, Zrinka ; Tomić, Sanja ; Amini, Hashem ; Marder, Todd B. ; Piantanida, Ivo | Triarylborane Dyes as a Novel Non‐Covalent and Non‐Inhibitive Fluorimetric Markers for DPP III Enzyme // Molecules, 26 (2021), 4816, 20. doi: 10.3390/molecules26164816

  doiwww.mdpi.comdoi.orgfulir.irb.hr

• Ban, Željka ; Griesbeck, Stefanie ; Tomić, Sanja ; Nitsch, Jörn ; Marder, Todd ; Piantanida, Ivo | A quadrupolar bis‐triarylborane chromophore as a fluorimetric and chirooptic probe for simultaneous and selective sensing of DNA, RNA and proteins // Chemistry : a European journal, 26 (2020), 2195-2203. doi: 10.1002/chem.201903936

  doionlinelibrary.wiley.comdoi.orgfulir.irb.hr

• Ćehić, Mirsada ; Suć Sajko, Josipa ; Karačić, Zrinka ; Piotrowski, Patryciusz ; Šmidlehner, Tamara ; Jerić, Ivanka ; Schmuck, Carsten ; Piantanida, Ivo ; Tomić, Sanja | The guanidiniocarbonylpyrrole - fluorophore conjugates as theragnostic tools for DPP III monitoring and inhibition // Journal of biomolecular structure & dynamics, 38 (2020), 13; 3790-3800. doi: 10.1080/07391102.2019.1664936

  doiwww.tandfonline.comfulir.irb.hr

• Tomić, Antonija ; Horvat, Gordan ; Ramek, Michael ; Agić, Dejan ; Brkić, Hrvoje ; Tomić, Sanja | New zinc ion parameters suitable for classical MD simulations of zinc metallo-peptidases // Journal of chemical information and modeling, 59 (2019), 8; 3437-3453. doi: 10.1021/acs.jcim.9b00235

  doipubs.acs.orgdoi.org

• Bistrović Popov, Andrea ; Stolić, Ivana ; Krstulović, Luka ; Taylor, Martin C. ; Kelly, John M. ; Tomić, Sanja ; Tumir, Lidija-Marija ; Bajić, Miroslav ; Raić-Malić, Silvana | Novel symmetric bis-benzimidazoles: Synthesis, DNA/RNA binding and antitrypanosomal activity // European journal of medicinal chemistry, 173 (2019), 63-75. doi: 10.1016/j.ejmech.2019.04.007

  doiwww.sciencedirect.comdoi.org

• Tomin, Marko ; Tomić, Sanja | Oxidase or peptidase? A computational insight into a putative aflatoxin oxidase from Armillariella tabescens // Proteins, 87 (2019), 5; 390-400. doi: 10.1002/prot.25661

  doionlinelibrary.wiley.com

• Šmidlehner, Tamara ; Karačić, Zrinka ; Tomić, Sanja ; Schmuck, Carsten ; Piantanida, Ivo | Fluorescent cyanine-guanidiniocarbonyl-pyrrole conjugate with pH-dependent DNA/RNA recognition and DPP III fluorescent labelling and inhibition properties // Monatshefte für Chemie, 149 (2018), 7; 1307-1313. doi: 10.1007/s00706-018-2192-0

  doilink.springer.comfulir.irb.hr

• Sabljić, Igor ; Tomin, Marko ; Matovina, Mihaela ; Sučec, Iva ; Tomašić Paić, Ana ; Tomić, Antonija ; Abramić, Marija ; Tomić, Sanja | The first dipeptidyl peptidase III from a thermophile: Structural basis for thermal stability and reduced activity // PLoS One, 13 (2018), 2; e0192488, 25. doi: 10.1371/journal.pone.0192488

  doijournals.plos.orgdoi.orgfulir.irb.hrfulir.irb.hr

• Kazazić, Saša ; Karačić, Zrinka ; Sabljić, Igor ; Agić, Dejan ; Tomin, Marko ; Abramić, Marija ; Dadlez, Michal ; Tomić, Antonija ; Tomić, Sanja | Conservation of the conformational dynamics and ligand binding within M49 enzyme family // RSC Advances, 8 (2018), 24; 13310-13322. doi: 10.1039/c7ra13059g

  doipubs.rsc.orgpubs.rsc.orgfulir.irb.hr

• Tomin, Marko ; Tomić, Antonija ; Kovačević, Borislav ; Tomić, Sanja | The Mechanism of Peptide Hydrolysis Catalysed by Dipeptidyl Peptidase III from Bacteroides thetaiotaomicron // Croatica chemica acta, 91 (2018), 2; 187-193. doi: 10.5562/cca3343

  doihrcak.srce.hrfulir.irb.hr

• Hromić-Jahjefendić, Altijana ; Jajčanin Jozić, Nina ; Kazazić, Saša ; Grabar Branilović, Marina ; Karačić, Zrinka ; Schrittwieser, Jörg H. ; Das, Krishna Mohan Padmanabha ; Tomin, Marko ; Oberer, Monika ; Gruber, Karl et al. | A novel Porphyromonas gingivalis enzyme: An atypical dipeptidyl peptidase III with an ARM repeat domain // PLoS One, 12 (2017), 11; e0188915, 27. doi: 10.1371/journal.pone.0188915

  doijournals.plos.orgfulir.irb.hr

• Tomin, Marko ; Tomić, Sanja | Dynamic properties of dipeptidyl peptidase III from Bacteroides thetaiotaomicron and the structural basis for its substrate specificity – a computational study // Molecular biosystems, 13 (2017), 2407-2417. doi: 10.1039/c7mb00310b

  doipubs.rsc.org

• Matovina, Mihaela ; Agić, Dejan ; Abramić, Marija ; Matić, Sara ; Karačić, Zrinka ; Tomić, Sanja | New findings about human dipeptidyl peptidase III based on mutations found in cancer // RSC Advances, 7 (2017), 58; 36326-36334. doi: 10.1039/C7RA02642K

  doipubs.rsc.orgdoi.orgfulir.irb.hr

• Agić, Dejan ; Brkić, Hrvoje ; Tomić, Sanja ; Karačić, Zrinka ; Špoljarević, Marija ; Lisjak, Miroslav ; Bešlo, Drago ; Abramić, Marija | Validation of flavonoids as potential dipeptidyl peptidase III inhibitors: experimental and computational approach // Chemical biology & drug design, 89 (2017), 4; 619-627. doi: 10.1111/cbdd.12887

  doionlinelibrary.wiley.com

• Gundić, Mario ; Tomić, Antonija ; Wade, Rebecca C. ; Matovina, Mihaela ; Karačić, Zrinka ; Kazazić, Saša ; Tomić, Sanja | Human DPP III – Keap1 Interactions : A Combined Experimental And Computational study // Croatica chemica acta, 89 (2016), 2; 217-228. doi: 10.5562/cca2916

  doihrcak.srce.hr

• Tomić, Antonija ; Kovačević, Borislav ; Tomić, Sanja | Concerted nitrogen inversion and hydrogen bonding to Glu451 are responsible for protein-controlled suppression of the reverse reaction in the human DPP III // PCCP. Physical chemistry chemical physics, 18 (2016), 39; 27245-27256. doi: 10.1039/C6CP04580D

  doipubs.rsc.org

• Matić, Josipa ; Šupljika, Filip ; Tir, Nora ; Piotrowski, Patryciusz ; Schmuck, Carsten ; Abramić, Marija ; Piantanida, Ivo ; Tomić, Sanja | Guanidiniocarbonyl-pyrrole -aryl conjugates as inhibitors of human dipeptidyl peptidase III: combined experimental and computational study // RSC Advances, 6 (2016), 83044-83052. doi: 10.1039/c6ra16966j

  doipubs.rsc.orgpubs.rsc.org

• Crnolatac, Ivo ; Rogan, Iva ; Majić, Boris ; Tomić, Sanja ; Deligeorgiev, Todor ; Horvat, Gordan ; Makuc, Damjan ; Plavec, Janez ; Pescitelli, Gennaro ; Piantanida, Ivo | Small molecule probes finely differentiate between various ds- and ss-DNA and RNA by fluorescence, CD and NMR response // Analytica chimica acta, 940 (2016), 128-135. doi: 10.1016/j.aca.2016.08.021

  doiwww.journals.elsevier.com

• Smolko, Ana ; Šupljika, Filip ; Martinčić, Jelena ; Jajčanin-Jozić, Nina ; Grabar- Branilović, Marina ; Tomić, Sanja ; Ludwig- Müller, Jutta ; Piantanida, Ivo ; Salopek- Sondi, Branka | The role of conserved Cys residues in Brassica rapa auxin amidohydrolase: the Cys139 is crucial for the enzyme activity and the Cys320 regulates enzyme stability // PCCP. Physical chemistry chemical physics, 18 (2016), 13; 8890-8900. doi: 10.1039/c5cp06301a

  doipubs.rsc.org

• Brkić, Hrvoje ; Kovačević, Borislav ; Tomić, Sanja | Human 3-hydroxyanthranilate 3, 4-dioxygenase (3HAO) dynamics and reaction, a multilevel computational study // Molecular biosystems, 11 (2015), 3; 898-907. doi: 10.1039/C4MB00668B

  doipubs.rsc.orgpubs.rsc.org

• González-García, Jorge ; Tomić, Sanja ; Lopera, Alberto ; Guijarro, Lluís ; Piantanida, Ivo ; García-España, Enrique | Aryl-bis-(scorpiand)-aza receptors differentiate between nucleotide monophosphates by combination of aromatic, hydrogen bond and electrostatic interactions // Organic & biomolecular chemistry, 13 (2015), 1732-1740. doi: 10.1039/c4ob02084g

  doipubs.rsc.orgpubs.rsc.org

• Gershberg, Jana ; Radić Stojković, Marijana ; Škugor, Marko ; Tomić, Sanja ; Rehm, Thomas H. ; Rehm, Stephanie ; Saha-Möller, Chantu R. ; Piantanida, Ivo ; Würthner, Frank | Sensing of Double-Stranded DNA/RNA Secondary Structures by Water Soluble Homochiral Perylene Bisimide Dyes // Chemistry : a European journal, 21 (2015), 21; 7886-7895. doi: 10.1002/chem.201500184

  doionlinelibrary.wiley.com

• Tomić, Antonija ; Berynskyy, Mykhaylo ; Wade, Rebecca C. ; Tomić, Sanja | Molecular simulations reveal that the long range fluctuations of human DPP III change upon ligand binding // Molecular biosystems, 11 (2015), 3068-3080. doi: 10.1039/c5mb00465a

  doipubs.rsc.org

• Rastija, Vesna ; Agić, Dejan ; Tomić, Sanja ; Nikolić, Sonja ; Hranjec, Marijana ; Karminski-Zamola, Grace ; Abramić, Marija | Synthesis, QSAR, and molecular dynamics simulation of amidino-substituted benzimidazoles as dipeptidyl peptidase III inhibitors // Acta chimica slovenica, 62 (2015), 4; 867-878. doi: 10.17344/acsi.2015.1605

  doifulir.irb.hrfulir.irb.hrjournals.matheo.sidx.doi.org

• Grabar Branilović, Marina ; Tomić, Sanja | Computational study of the structural plasticity and the ligand binding affinity of the IRES subdomain IIa // Molecular biosystems, 10 (2014), 12; 3272-3279. doi: 10.1039/c4mb00469h

  doipubs.rsc.org

• Maršavelski, Aleksandra ; Lesjak, Sonja ; Močibob, Marko ; Weygand-Đurašević, Ivana ; Tomić, Sanja | A single amino acid substitution affects the substrate specificity of the seryl-tRNA synthetase homologue // Molecular biosystems, 10 (2014), 12; 3207-3216. doi: 10.1039/C4MB00416G

  doipubs.rsc.org

• Tomić, Antonija ; Tomić, Sanja | Hunting the human DPP III active conformation : combined thermodynamic and QM/MM calculations // Dalton transactions, 43 (2014), 15503-15514. doi: 10.1039/C4DT02003K

  doipubs.rsc.org

• Bertoša, Branimir ; Mikleušević, Goran ; Wielgus-Kutrowska, Beata ; Narczyk, Marta ; Hajnić, Matea ; Leščić Ašler, Ivana ; Tomić, Sanja ; Luić, Marija ; Bzowska, Agnieszka | Homooligomerization is needed for stability: a molecular modelling and solution study of E. coli purine nucleoside phosphorylase // The FEBS journal, 281 (2014), 7; 1860-1871. doi: 10.1111/febs.12746

  doi

• Jajčanin Jozić, Nina ; Tomić, Sanja ; Abramić, Marija | Importance of the three basic residues in the vicinity of the zinc-binding motives for the activity of the yeast dipeptidyl peptidase III // Journal of biochemistry, 155 (2014), 1; 43-50. doi: 10.1093/jb/mvt093

  doijb.oxfordjournals.orgjb.oxfordjournals.org

• Aleksić, Maja ; Bertoša, Branimir ; Nhili, Raja ; Depauw, Sabine ; Martin-Kleiner, Irena ; David-Cordonnier, Marie-Helene ; Tomić, Sanja ; Kralj, Marijeta ; Karminski-Zamola, Grace | Anilides and quinolones with nitrogen-bearing substituents from benzothiophene- and thienothiophene- series: synthesis, photochemical synthesis, cytostatic evaluation, 3D-derived QSAR analysis and DNA-binding properties // European journal of medicinal chemistry, 71 (2014), 267-281. doi: 10.1016/j.ejmech.2013.11.010

  doiwww.sciencedirect.comac.els-cdn.com

• Grabar Branilović, Marina ; Tomić, Sanja ; Tumir, Lidija-Marija ; Piantanida, Ivo | The bis-phenanthridinium system flexibility and position of covalently bound uracil finely tunes the interaction with polynucleotides // Molecular biosystems, 9 (2013), 8; 2051-2062. doi: 10.1039/C3MB25578F

  doipubs.rsc.org

• Radić Stojković, Marijana ; Škugor, Marko ; Tomić, Sanja ; Grabar, Marina ; Smrečki, Vilko ; Dudek, Łukasz ; Grolik, Jarosław ; Eilmes, Julita ; Piantanida, Ivo | Dibenzotetraaza[14]annulene – adenine conjugate recognizes complementary poly dT among ss-DNA / ss-RNA sequences // Organic & biomolecular chemistry, 11 (2013), 24; 4077-4085. doi: 10.1039/c3ob40519b

  doipubs.rsc.org

• Tumir, Lidija-Marija ; Crnolatac, Ivo ; Deligeorgiev, Todor ; Vasilev, Aleksey ; Kaloyanova, Stefka ; Grabar Branilović, Marina ; Tomić, Sanja ; Piantanida, Ivo | Kinetic differentiation between homo- and alternating AT-DNA by sterically restricted phosphonium dyes // Chemistry : a European journal, 18 (2012), 13; 3859-3864. doi: 10.1002/chem.201102968

  doionlinelibrary.wiley.com

• Hrvoje, Brkić ; Daniela, Buongiorno ; Michael, Ramek ; Grit, Straganz ; Sanja, Tomić | Dke1 – Structure, Dynamics and Function, A Theoretical and Experimental Study Elucidated the Role of the Binding Site Shape and the H-Bonding Network in Catalysis // Journal of biological inorganic chemistry, 17 (2012), 5; 801-815. doi: 10.1007/s00775-012-0898-8

  doird.springer.com

• Tomić, Antonija ; Gonzalez, Miguel ; Tomić, Sanja | The large scale conformational change of the human DPP III – substrate prefers the "closed" form // Journal of chemical information and modeling, 52 (2012), 6; 1583-1594. doi: 10.1021/ci300141k

  doipubs.acs.org

• Aleksić, Maja ; Bertoša, Branimir ; Nhili, Raja ; Uzelac, Lidija ; Jarak, Ivana ; Depauw, Sabine ; David-Cordonnier, Marie-Hélène ; Kralj, Marijeta ; Tomić, Sanja ; Karminski-Zamola, Grace | Novel Substituted Benzothiophene and Thienothiophene Carboxanilides and Quinolones: Synthesis, Photochemical Synthesis, DNA-Binding Properties, Antitumor Evaluation and 3D-Derived QSAR Analysis // Journal of medicinal chemistry, 55 (2012), 11; 5044-5060. doi: 10.1021/jm300505h

  doipubs.acs.org

• Tus, Alan ; Rakipović, Alen ; Peretin, Goran ; Tomić, Sanja ; Šikić, Mile | BioMe : biologically relevant metals // Nucleic acids research, 40 (2012), W352-W357. doi: 10.1093/nar/gks514

  doinar.oxfordjournals.orgnar.oxfordjournals.org

• Šimunović, Mijo ; Žagrović, Bojan ; Tomić, Sanja | Mechanism and thermodynamics of ligand binding to auxin amidohydrolase // Journal of molecular recognition, 24 (2011), 5; 854-861. doi: 10.1002/jmr.1128

  doionlinelibrary.wiley.com

• Tomić, Antonija ; Abramić, Marija ; Špoljarić, Jasminka ; Agić, Dejan ; Smith, David M. ; Tomić, Sanja | Human Dipeptidyl Peptidase III: Insights into Ligand Binding from a Combined Experimental and Computational Approach // Journal of molecular recognition, 24 (2011), 5; 804-814. doi: 10.1002/jmr.1115

  doionlinelibrary.wiley.com

• Groger, Kathrin ; Baretić, Domagoj ; Piantanida, Ivo ; Marjanović, Marko ; Kralj, Marijeta ; Grabar, Marina ; Tomić, Sanja ; Schmuck, Carsten | Guanidiniocarbonyl-pyrrole-aryl conjugates as nucleic acid sensors: switch of binding mode and spectroscopic responses by introducing additional binding sites into the linker // Organic & biomolecular chemistry, 9 (2011), 1; 198-209. doi: 10.1039/C0OB00103A

  doipubs.rsc.org

• Špoljarić, Jasminka ; Tomić, Antonija ; Vukelić, Bojana ; Salopek-Sondi, Branka ; Agić, Dejan ; Tomić, Sanja ; Abramić, Marija | Human Dipeptidyl Peptidase III : the Role of Asn406 in Ligand Binding and Hydrolysis // Croatica chemica acta, 84 (2011), 2; 259-268. doi: 10.5562/cca1808

  doihrcak.srce.hr

• Šikić, Kresimir ; Tomić, Sanja ; Carugo, Oliviero | Systematic comparison of crystal and NMR protein structures deposited in the protein data bank // The Open biochemistry journal, 4 (2010), 83-95. doi: 10.2174/1874091X01004010083

  doibenthamopen.com

• Bertoša, Branimir ; Aleksić, Maja ; Karminski-Zamola, Grace ; Tomić, Sanja | QSAR analysis of antitumor active amides and quinolones from thiophene series // International journal of pharmaceutics, 394 (2010), 1-2; 106-114. doi: 10.1016/j.ijpharm.2010.05.014

  doiwww.sciencedirect.comdoi.org

• Burja, Bojan ; Čimbora-Zovko, Tamara ; Tomić, Sanja ; Jelušić, Tihana ; Kočevar, Marijan ; Polanc, Slovenko ; Osmak, Maja | Pyrazolone-fused combretastatins and their precursors : synthesis, cytotoxicity, antitubulin activity and molecular modeling studies // Bioorganic & medicinal chemistry, 18 (2010), 7; 2375-2387. doi: 10.1016/j.bmc.2010.03.006

  doiwww.sciencedirect.comdoi.org

• Tumir, Lidija-Marija ; Grabar, Marina ; Tomić, Sanja ; Piantanida, Ivo | The interactions of bis-phenanthridinium – nucleobase conjugates with nucleotides: adenine conjugate recognizes UMP in aqueous medium // Tetrahedron, 66 (2010), 13; 2501-2513. doi: 10.1016/j.tet.2010.01.063

  doiwww.sciencedirect.comdoi.orgfulir.irb.hr

• Savić, Bojana ; Tomić, Sanja ; Magnus, Volker ; Gruden, Kristina ; Barle, Katja ; Grenković, Renata ; Ludwig-Müller, Jutta ; Salopek-Sondi, Branka | Auxin amidohydrolases from Brassica rapa cleave the alanine conjugate of indolepropionic acid as a preferable substrate: a biochemical and modeling approach // Plant and cell physiology, 50 (2009), 9; 1587-1599. doi: 10.1093/pcp/pcp101

  doiacademic.oup.comdoi.org

• Ćaleta, Irena ; Kralj, Marijeta ; Marjanović, Marko ; Bertoša, Branimir ; Tomić, Sanja ; Pavlović, Gordana ; Pavelić, Krešimir ; Karminski-Zamola, Grace | Novel Cyano- and Amidino- Benzothiazole Derivatives: Synthesis, Antitumor Evaluation, X-ray and QSAR Analysis // Journal of medicinal chemistry, 52 (2009), 6; 1744-1756. doi: 10.1021/jm801566q

  doipubs.acs.orgdoi.org

• Banjanac, Mihailo ; Tatić, Iva ; Ivezić, Zrinka ; Tomić, Sanja ; Dumić, Jerka | Pyrimido-Pyrimidines : A Novel Class of Dihydrofolate Reductase Inhibitors // Food technology and biotechnology, 47 (2009), 3; 236-245

  www.ftb.com.hr

• Šikić, Mile ; Tomić, Sanja ; Vlahoviček, Kristian | Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests // Plos computational biology, 5 (2009), 1; e1000278-1-e1000278-9. doi: 10.1371/journal.pcbi.1000278

  doijournals.plos.orgfulir.irb.hr

• Vujasinović, Ines ; Mlinarić-Majerski, Kata ; Bertoša, Branimir ; Tomić, Sanja | Influence of the Rigid Spacer to Macrocyclization of Poly(thialactones): Synthesis and Computational Analysis // Journal of physical organic chemistry, 22 (2009), 5; 431-437. doi: 10.1002/poc.1479

  doionlinelibrary.wiley.comdoi.org

• Bertoša, Branimir ; Kojić-Prodić, Biserka ; Wade, Rebecca ; Tomić, Sanja | Mechanism of Auxin Interaction with Auxin Binding Protein (ABP1): A Molecular Dynamics Simulation Study // Biophysical journal, 94 (2008), 1; 27-37. doi: 10.1529/biophysj.107.109025

  doiwww.sciencedirect.comdoi.org

• Hernandez-Folgado, Laura ; Schmuck, Carsten ; Tomić, Sanja ; Piantanida, Ivo | A novel pyrene-guanidiniocarbonyl-pyrrole cation efficiently differentiates between ds-DNA and ds-RNA by two independent, sensitive spectroscopic methods // Bioorganic & medicinal chemistry letters, 18 (2008), 2977-2981. doi: 10.1016/j.bmcl.2008.03.060

  doiwww.elsevier.com

• Luić, Marija ; Štefanić, Zoran ; Ceilinger, Igor ; Hodošček, Milan ; Janežić, Dušanka ; Lenac, Tihana ; Leščić Ašler, Ivana ; Šepac, Dragan ; Tomić, Sanja | Combined X-Ray Diffraction and QM/MM Study of the Burkholderia cepacia Lipase-Catalyzed Secondary Alcohol Esterification // The journal of physical chemistry. B, Condensed matter, materials, surfaces, interfaces & biophysical, 112 (2008), 16; 4876-4883. doi: 10.1021/jp077717u

  doipubs.acs.org

• Dokmanić, Ivan ; Šikić, Mile ; Tomić, Sanja | Metals in proteins: correlation between the metal- ion type, coordination number and the amino-acid residues involved in the coordination // Acta crystallographica. Section D, Biological crystallography, 64 (2008), 3; 257-263. doi: 10.1107/S090744490706595X

  doiscripts.iucr.org

• Mihel, Josip ; Šikić, Mile ; Tomić, Sanja ; Jeren Branko ; Vlahoviček, Kristian | PSAIA - Protein Structure and Interaction Analyzer // BMC structural biology, 8 (2008), 21, 11. doi: 10.1186/1472-6807-8-21

  doibmcstructbiol.biomedcentral.comdoi.orgpubmed.ncbi.nlm.nih.govfulir.irb.hr

• Tomić, Sanja ; Bertoša, Branimir ; Wang, Ting ; Wade, Rebecca | COMBINE Analysis of the Specificity of Binding of Ras Proteins to their Effectors // Proteins, 67 (2007), 2; 435-447-x

• Tomašić, Ana ; Bertoša, Branimir ; Tomić, Sanja ; Šoškić, Milan ; Magnus, Volker | Binding behavior of amino acid conjugates of indole-3-acetic acid to immobilized human serum albumin // Journal of Chromatography A, 1154 (2007), 1-2; 240-249-x

  www.sciencedirect.com

• Tomić, Sanja ; Ramek, Michael | Quantum Mechanical Study of Burkholderia cepacia Lipase Enantioselectivity // Journal of molecular catalysis. B, Enzymatic, 38 (2006), 139-147-x

• Tumir, Lidija Marija ; Piantanida, Ivo ; Žinić, Mladen ; Juranović Cindrić, Iva ; Meić, Zlatko ; Kralj, Marijeta ; Tomić, Sanja | Synthesis of phenanthridinium bis-nucleobase conjugates, interactions with poly U, nucleotides and in vitro antitumor activity of mono- and bis-nucleobase conjugates // European journal of medicinal chemistry, 41 (2006), 10; 1153-1166-x

  www.sciencedirect.com

• Tumir, Lidija-Marija ; Piantanida, Ivo ; Juranović, Iva ; Meić, Zlatko ; Tomić, Sanja ; Žinić, Mladen | Recognition of homo-polynucleotides containing adenine by phenanthridinium bis-uracil conjugate in aqueous media. // Chemical communications, - (2005), 20; 2561-2563-x

• Ramek, Michael ; Tomić, Sanja | Ab initio Hartree-Fock Investigation of 2-Methylindole-3-acetic Acid // Croatica chemica acta, 77 (2004), 1-2; 371-376-x

• Wang, Ting ; Tomić, Sanja ; Gabdoulline, Razif ; Wade, Rebecca | How Optimal Are the Binding Energetics of Barnase and Barstar? // Biophysical journal, 87 (2004), 1618-1630-x

• Tomić, Sanja ; Bertoša, Branimir ; Kojić-Prodić, Biserka ; Kolosvary, Istvan | Stereoselectivity of Burkholderia cepacia lipase towards secondary alcohols: molecular modelling and 3D QSAR approach // Tetrahedron: asymmetry, 15 (2004), 1163-1172

• Bertoša, Branimir ; Kojić-Prodić, Biserka ; Ramek Michael ; Piperaki, Stavroula, Tsantili-Kakoulidou, Anna ; Wade, Rebecca ; Tomić, Sanja | A new approach to predict the biological activity of molecules based on similarity of their interaction fields and the logP and logD values: application to auxins // Journal of chemical information and computer sciences, 43 (2003), 1532-1541-x

• Antolić, Snježana ; Dolušić, Eduard ; Kožić, Erika Katačić ; Kojić-Prodić, Biserka ; Magnus, Volker ; Ramek, Michael ; Tomić, Sanja | Auxin activity and molecular structure of 2-alkylindole-3-acetic acids // Plant growth regulation, 39 (2003), 3; 235-252-x

• Tomić, Sanja ; Kojić-Prodić, Biserka | A Quantitative Model for Predicting Enzyme Enantioselectivity: Application to Burkholderia cepacia lipase and 3-(Aryloxy)-1, 2-propanediol Derivatives // Journal of molecular graphics & modelling, 21 (2002), 3; 241-252-x

• Tomić, Sanja ; Dobovičnik, Vladimir ; Šunjić, Vitomir ; Kojić-Prodić, Biserka | Enantioselectivity of the Pseudomonas cepacia lipase towards 2-methyl-3-(or 4)-arylalkanols: an approach based on stereoelectronic theory and the molecular modeling // Croatica chemica acta, 74 (2001), 343-357-x

• Luić, Marija ; Tomić, Sanja ; Leščić, Ivana ; Ljubović, Edina ; Šepac, Dragan ; Šunjić, Vitomir ; Vitale, Ljubinka ; Saenger, Wolfram ; Kojić-Prodić, Biserka | Complex of Burkholderia cepacia lipase with transition state analogue of 1-phenoxy-2-acetoxybutane, Biocatalytic, structural and modelling study. // European journal of biochemistry, 268 (2001), 14; 3964-3973-x

• Ramek, Michael ; Tomić, Sanja | Ab initio Hartree-Fock investigation of 1-H- pyrrolo[3, 2-b]pyridine-3-yl acetic acid // Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy, 57 (2001), 1951-1957

• Tomić, Sanja ; Wade, Rebecca C. | COMBINE analysis of nuclear receptor-DNA binding specifity: Comparison of two datasets // Croatica chemica acta, 74 (2001), 295-314-x

• Tomić, Sanja ; Nillson, Lennart ; Wade, Rebecca | Nuclear receptor-DNA binding specificity : a combine and Free-Wilson QSAR ananlysis // Journal of medicinal chemistry, 43 (2000), 9; 1780-1792-x

• Ramek, Michael ; Tomić, Sanja | Quantum chemical conformational analysis of the auxin phytohormone 4-methyl-3-indole acetic acid // International journal of quantum chemistry, 75 (1999), 6; 1003-1008-x

• Kojić-Prodić, Biserka ; Magnus, Volker ; Antolić, Snježana ; Tomić, Sanja ; Salopek-Sondi, Branka | Structure/activity correlations for auxins // Acta botanica Croatica, 58 (1999), 27-37

• Tomic, S ; Chughtai, N ; Ali, S | SOCS-1, -2, -3: selective targets and functions downstream of the prolactin receptor // Molecular and cellular endocrinology, 158 (1999), 1-2; 45-54. doi: 10.1016/s0303-7207(99)00180-x

  doi

• Ramek, Michael ; Tomić, Sanja | Ab Initio RHF investigation of mono- and dihalogenated indole-3-acetic acid (IAA) phytohormones. // Journal of molecular structure. Theochem, 454 (1998), 167-173-x

• Tomić, Sanja ; Gabdoulline, Razif R. ; Kojić-Prodić, Biserka ; Wade, Rebecca C. | Classification of auxin related compounds based on similarity of their interaction fields: extension to a new set of compounds. // Internet journal of chemistry, 1 (1998), 26-x

• Ramek, Michael ; Tomić, Sanja | RHF conformational analysis of the auxin phytohormones n-ethyl-indole-3-acetic acid (n=4, 5, 6). // International journal of quantum chemistry, 70 (1998), 6; 1169-1175-x

• Tomić, Sanja ; Ramek, Michael ; Kojić-Prodić, Biserka | Combined Ab Initio SCF and molecular mechanics studies of propionic and isobutyric acids and their indole derivatives related to the phytohormone auxin (Indole-3-acetic acid). // Croatica chemica acta, 71 (1998), 511-525-x

• Tomić, Sanja ; Gabdoulline, Razif R. ; Kojić-Prodić, Biserka ; Wade, Rebecca C. | Classification of auxin plant hormones by interaction property similarity indices. // Journal of computer-aided molecular design, 12 (1998), 63-79-x

• Antolić, Snježana ; Kojić-Prodić, Biserka ; Magnus, Volker ; Salopek, Branka ; Tomić, Sanja | Structure-activity correlations for ring-alkylated derivatives of indole-3-acetic acid // Plant physiology, 114 (1997), 3; 158-158-x

• Ramek, Michael ; Tomić, Sanja ; Kojić-Prodić, Biserka | Comparative ab initio SCF conformational study of phytohormones (auxins) 4-chloro-indole-3-acetic acid and indole-3-acetic acid // International journal of quantum chemistry, 60 (1996), 8; 1727-1733. doi: 10.1002/(SICI)1097-461X(1996)60:8<1727::AID-QUA1>3.0.CO;2-%23

  doionlinelibrary.wiley.com

• Antolić, Snježana ; Kojić-Prodić, Biserka ; Tomić, Sanja ; Nigović, Biljana ; Magnus, Volker ; Cohen, Jerry D. | Structural studies on monofluorinated derivatives of the phytohormone indole-3-acetic acid (auxin) // Acta crystallographica. Section B, Structural science, 52 (1996), 4; 651-661. doi: 10.1107/S0108768195016302

  doiscripts.iucr.org

• Tomić, Sanja ; Kojić-Prodić, Biserka ; Magnus, Volker ; Laćan, Goran ; Duddeck, H. ; Hiegemann, M. | Synthesis and conformational analysis of plant hormone (auxin) related compound, 2-(indol-3-yl)ethyl β -D-galactopyranoside and its 2, 3, 4, 6-tetra-O-acetyl derivative // Carbohydrate research, 279 (1995), 1-19. doi: 10.1016/0008-6215(95)00245-6

  doiwww.sciencedirect.com

• Tomić, Sanja ; van Duijneveldt, F. B. ; Kroon-Batenburg, L. M. ; Kojić-Prodić, Biserka | Molecular Mechanics and SCF MO Conformational Analysis of Indol-3-ylacetic Acid, Phytohormone // Croatica chemica acta, 68 (1995), 1; 205-214

  hrcak.srce.hrhrcak.srce.hr

• Tomić, Sanja ; van Eijck, B. P ; Kojić-Prodić, B ; Kroon, J. ; Magnus, Volker ; Nigović, Biljana ; Ilić, Nebojša ; Duddeck, Helmut ; Hiegemann, Monika | Synthesis and Conformational Analysis of Plant Hormone (auxin) Related Compounds, 2-(indol-3-yl)ethyl and 2-(phenyl)ethyl β -D-xylopyranosides and their 2, 3, 4-tri-O-acetyl Derivatives // Carbohydrate research, 270 (1995), 1; 11-32. doi: 10.1016/0008-6215(95)00037-T

  doiwww.sciencedirect.com

• Ramek, Michael ; Tomić, Sanja ; Kojić-Prodić, Biserka | Systematic Ab Initio SCF Conformational Analysis of Indol-3-ylacetic Acid Phytohormone (Auxin): Comparison with Experiment and Molecular Mechanics Calculations // International journal of quantum chemistry, 56 (1995), 22; 75-81. doi: 10.1002/qua.560560708

  doionlinelibrary.wiley.com

• Tomić, Sanja ; van Eijck, B. P. ; Kroon, J. ; Kojić-Prodić, Biserka ; Laćan, Goran ; Magnus, Volker ; Duddeck, Helmut ; Hiegemann, Monika | Synthesis and Conformational Analysis of 2-(indol-3-yl) ethyl α -L-arabinopyranoside and its 2, 3, 4-tri-O-acetyl derivative // Carbohydrate research, 259 (1994), 2; 175-190

  www.sciencedirect.com

• Kojić-Prodić, Biserka ; Nigović, Biljana ; Puntarec, Vitomir ; Tomić, Sanja ; Magnus, Volker | Structural comparison of Biologically Active and Inactive Conjugates of alpha-Amino Acids and the Plant Growth Hormone (Auxin) Indole-3-acetic Acid // Acta crystallographica. Section B, Structural science, 49 (1993), 367-374

• Keglević, Dina ; Kojić-Prodić, Biserka ; Banić, Zrinka ; Tomić, Sanja ; Puntarec, Vitomir | Synthesis and Conformational Analysis of Muramic Acid δ - Lactam Structures and Their -O-(2-Acetamido-2-deoxy- α -D-glucopyranosyl) Derivatives, Characteristic of Bacterial Spore Peptidoglycan // Carbohydrate research, 241 (1993), 131-152. doi: 10.1016/0008-6215(93)80101-J

  doiwww.sciencedirect.com

• Kojić-Prodić, Biserka ; Nigović, Biljana ; Tomić, Sanja ; Ilić, Nebojša ; Magnus, Volker ; Giba, Zlatko ; Konjević, Radomir ; Duax, William L. | Structural studies on 5-(n-alkyl)-substituted derivatives of the plant hormone indole-3-acetic acid // Acta crystallographica. Section B, Structural science, 47 (1991), 1010-1019. doi: 10.1107/S0108768191008996

  doiscripts.iucr.org

• Kojić-Prodić, Biserka ; Danilović, Žarko ; Puntarec, Vito ; Tomić, Sanja ; Šušković, Božidar | Crystal and Molecular Structure of (4S, 5S)-6-Ammonium-6-deoxy-3-O-ascorbate // Croatica chemica acta, 64 (1991), 3; 311-317

  hrcak.srce.hrhrcak.srce.hr

• Kušec, Rajko ; Nikolić, V. ; Tomić, Sanja ; Hančević, Janko ; Davila, S. ; Valković, Vladivoj | Trace elements in periosteal callus and cortical bone after plating for fracture // Periodicum biologorum. Supplement, 92 (1990), 3; 325-327

• Tomić, Sanja ; Lakatoš, Josip ; Valković, Vladivoj | Analysis of Trace Elements in Hair of Pregnant Women Using XRF Spectroscopy // X-Ray Spectrometry, 18 (1989), 2; 73-76. doi: 10.1002/xrs.1300180208

  doionlinelibrary.wiley.com

• Tomić, Sanja ; Valković, Vladivoj ; Budnar, M. ; Starc, V. ; Šmit, Žiga | Comparison of XRF and PIXE on aerosol samples // Nuclear instruments & methods in physics research. Section B, Beam interactions with materials and atoms, 24-25 (1987), 2; 609-612. doi: 10.1016/S0168-583X(87)80207-0

  doiwww.sciencedirect.com

• Orlić, Ivica ; Tomić, Sanja ; Makjanić, Jagoda ; Jakšić, Milko ; Valković, Vladivoj | A Modified Approach to Quantitative XRF Analysis of Thick Targets // X-Ray Spectrometry, 16 (1987), 3; 125-130. doi: 10.1002/xrs.1300160307

  doionlinelibrary.wiley.com

• Tomić, Sanja ; Krmpotić-Nemanić, Jelena ; Valković, Vladivoj | X-ray fluorescence of (irregularly shaped) bone sample materials // Nuclear instruments & methods in physics research. Section B, Beam interactions with materials and atoms, 18 (1986), 1-6; 71-76. doi: 10.1016/S0168-583X(86)80014-3

  doiwww.sciencedirect.com

• Nagj, Marina ; Makjanić, Jagoda ; Orlić, Ivica ; Tomić, Sanja ; Valković, Vladivoj | Determination of Uranium in Sea Water by X-Ray Fluorescence Spectroscopy // Journal of radioanalytical and nuclear chemistry, 97 (1986), 2; 373-380. doi: 10.1007/BF02035683

  doilink.springer.com

• Tomić, Sanja ; Nagj, Marina ; Raos, D. | Determination of Heavy Metal in Drinking Water by X-Ray Spectroscopy // International journal of environmental analytical chemistry, 23 (1985), 87-94. doi: 10.1080/03067318508076437

  doiwww.tandfonline.comdoi.org

Review article (scientific)

• Ljubović, Edina ; Tomić, Sanja ; Kojić-Prodić, Biserka ; Šunjić, Vitomir | Current Approach to Study of Biocatalytic Reactions: Experiment and Molecular Modeling of Lipase Catalysed Reactions // Kemija u industriji : časopis kemičara i tehnologa Hrvatske, 50 (2001), 3; 139-156

Review, commentary, critique

• Grabar Branilović, Marina ; Maršavelski, Aleksandra ; Tomić, Antonija ; Tomić, Sanja | Nobelova nagrada za kemiju za 2013. godinu // Kemija u industriji : časopis kemičara i tehnologa Hrvatske, 62 (2013), 11-12; 468-471

  fulir.irb.hrhrcak.srce.hr

Conference abstract

• Tomić, Antonija; Tomić, Sanja | Understanding Binding and Hydrolysis of Neuropeptides in the Active Site of Human Dipeptidyl Peptidase III // Computational Chemistry Day 2022 : book of abstracts. | Zagreb: Prirodoslovno-matematički fakultet Sveučilišta u Zagrebu, 2022. str. 19-19

  drive.google.com

• Matić, Antonia ; Karačić, Zrinka ; Tomić, Antonija ; Brkić, Hrvoje ; Tomić Sanja | Dipeptidyl peptidase iii inhibition tests by metal dications // Book of Abstracts of the Congress of the Croatian Society of Biochemistry and Molecular Biology HDBMB22: From Science to Knowledge. | Zagreb: Hrvatsko društvo za biokemiju i molekularnu biologiju (HDBMB), 2022. str. 105-105

  congress2022.hdbmb.hr

• Kekez, Ivana ; Matić, Sara ; Tomić, Sanja ; Matković-Čalogović, Dubravka | Binding of peptide mimicking the ETGE loop of dipeptidyl peptidase III to the Kelch domain of Keap1 // The twenty-eighth Croatian-Slovenian Crystallographic Meeting : Book of Abstracts. | Zagreb, 2022. str. 8-8

• Matovina, Mihaela ; Tomašić Paić, Ana ; Barbarić, Lea ; Brkić, Hrvoje ; Tomić, Sanja ; Marinović, Ivana | Study of the interaction of dipeptidyl peptidase 3 and SH2 domain-containing protein 3C // Book of Abstracts of the Congress of the Croatian Society of Biochemistry and Molecular Biology HDBMB22: From Science to Knowledge. | Zagreb: Croatian Society of Biochemistry and Molecular, 2022. str. 107-107

  congress2022.hdbmb.hr

• Tomić, Sanja ; Karačić, Zrinka ; Tomić, Antonija ; Brkljačić, Lidija ; Šupljika, Filip | Neuropeptides - substrates of dipeptidyl peptidase III // From Science to Knowledge. | Zagreb: Hrvatsko Društvo za Biotehnologiju, 2022. str. 151-151

  congress2022.hdbmb.hr

• Tomić, Antonija ; Karačić, Zrinka ; Šupljika, Filip ; Tomić, Sanja | Computational modelling an aid to understand binding and hydrolysis of neuropeptides in the active site of human DPP III // Book of abstracts of the 1st Central and Eastern European Conference on Physical Chemistry and Materials Science (CEEC-PCMS1). | 2022. str. 196-196

  www.ceec-physchem.org

• Tomić, Antonija ; Tomić, Sanja | Computational study of the human DPP III catalyzed peptide hydrolysis - difference between „good“ and „slow“ substrate // Math/Chem/Comp 2022 and 33rd MC2 Conference : Book of Abstracts. | Zagreb: Hrvatsko kemijsko društvo, 2022. str. 24-24

  mcc.hkd.hr

• Zonjić, Iva ; Tumir, Lidija Marija ; Šupljika, Filip ; Crnolatac, Ivo ; Racane, Livio ; Tomić, Sanja ; Radić Stojković, Marijana | Interactions of benzothiazole ligands with DNA:RNA hybrids and triplex structures // IV. SIMPOZIJ SUPRAMOLEKULSKE KEMIJE Supramolecular Chemistry 2021. | Zagreb, 2021. str. 1-1

• Tomić, Antonija ; Tomić, Sanja | Understanding the human DPP iii substrate specificity : QM/MM and MD calculations // Math/Chem/Comp 2021 : 32nd MC2 Conference : book of abstracts. | Zagreb: Hrvatsko kemijsko društvo, 2021. str. 42-42

  mcc.hkd.hr

• Agić, Dejan ; Šubarić, Domagoj ; Karnaš, Maja ; Komar, Mario ; Karačić, Zrinka ; Tomić, Sanja ; Bešlo, Drago ; Rastija, Vesna ; Molnar, Maja | Interactions of human dipeptidyl petidase III with coumarinyl Schiff bases // 27th Croatian Meeting of Chemists and Chemical Engineers and 5th Symposium Vladimir Prelog : Book of Abstracts. | Zagreb: Hrvatsko kemijsko društvo, 2021. str. 157-157

  27hskiki.hkd.hr

• Zonjić, Iva ; Tumir, Lidija Marija ; Šupljika, Filip ; Crnolatac, Ivo ; Racané, Livio ; Tomić, Sanja ; Radić Stojković Marijana | Recognition of DNA:RNA hybrid and triplex structure by a series of benzothiazole ligands // 27th Croatian Meeting of Chemists and Chemical Engineers. | Zagreb: Hrvatsko kemijsko društvo, 2021. str. 44-44

• Zonjić, Iva ; Tumir, Lidija-Marija ; Šupljika, Filip ; Crnolatac, Ivo ; Racane, livio ; Tomić, Sanja ; Radić Stojković, Marijana | Recognition of DNA:RNA hybrid and triplex structures by a series of benzothiazole ligands. | 2021. str. 1-1

• Matić, Antonia ; Karačić, Zrinka ; Tomić, Antonija ; Brkić, Hrvoje ; Tomić, Sanja | Ispitivanja inhibicije dipeptidil peptidaze III metalnim dikationima // Knjiga sažetaka - 18. Ružičkini dani: Danas znanost - Sutra industrija. | Zagreb : Osijek: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI) ; Prehrambeno tehnološki fakultet Sveučilišta Josipa Jurja Strossmayera u Osijeku, 2020. str. 78-78

  www.hdki.hr

• Tomić, Sanja ; Karačić, Zrinka ; Brkljačić, Lidija ; Tomašić Paić, Ana ; Ćehić, Mirsada ; Matovina, Mihaela | Uloga dipeptidil peptidaze III u regulaciji boli // Knjiga sažetaka - 18. Ružičkini dani: Danas znanost - Sutra industrija. | Zagreb : Osijek: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI) ; Prehrambeno tehnološki fakultet Sveučilišta Josipa Jurja Strossmayera u Osijeku, 2020. str. 134-134

  www.hdki.hr

• Agić, Dejan ; Karnaš, Maja ; Šubarić, Domagoj ; Komar, Mario ; Karačić, Zrinka ; Tomić, Sanja ; Molnar, Maja | Inactivation of human dipeptidyl peptidase III by quinazolinone derivatives // 18th International conference Ružička Days “Today Science – Tomorrow Industry” : Book of Abstracts / Jukić, Ante (ur.). | Zagreb, Osijek: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI) ; Prehrambeno tehnološki fakultet Osijek, 2020. str. 124-124

  www.hdki.hr

• Tomin, Marko ; Tomić, Sanja | Human DPP III - Keap1 interactions // The 3rd COST-sponsored ARBRE-MOBIEU plenary meeting Book of Abstracts. | Zagreb: Institut Ruđer Bošković ; Hrvatsko biofizičko društvo, 2019. str. 134-135

  arbre-mobieu.eu

• Bistrović, Andrea ; Stolić, Ivana ; Krstulović, Luka ; Taylor, C. Martin ; Kelly, M. John ; Tomić, Sanja ; Bajić, Miroslav ; Raić-Malić, Silvana | Novel symmetric bis-benzimidazoles: synthesis, DNA/RNA binding and antitrypanosomal activity // Knjiga sažetaka. | Zagreb: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI), 2019. str. 145-145

• Tomin, Marko ; Tomić, Sanja | Human DPP III - Keap1 interactions // Computational Chemistry Day 2019 Book of Abstracts. | Zagreb: Prirodoslovno-matematički fakultet Sveučilišta u Zagrebu, 2019. str. 24-24

  ccd19.pharma.hr

• Tomić, Antonija ; Horvat, Gordan ; Ramek, Michael ; Agić, Dejan ; Brkić, Hrvoje ; Tomić, Sanja | Development of new zinc ion parameters suitable for classical MD simulations of zinc metallo-peptidases // Computational Chemistry Day 2019 :Book of abstracts. | Zagreb: Prirodoslovno-matematički fakultet Sveučilišta u Zagrebu, 2019. str. 3-3

  ccd19.pharma.hr

• Tomin, Marko ; Tomić, Sanja | Dipeptidyl peptidase III from a mesophilic and thermophilic bacterium – similarities and differences // The 14th Greta Pifat Mrzljak International School of Biophysics, ABC of Physics of Life: Book of abstracts. | Zagreb: Institut Ruđer Bošković ; Hrvatsko biofizičko društvo, 2018. str. 122-122

• Tomić, Antonija ; Ramek, Michael ; Tomić, Sanja | Development of new parameters for the Zn2+ ion for the specific environment of the DPP III enzyme catalytic site // Computational Chemistry Day Book of abstracts. | Zagreb: Prirodoslovno-matematički fakultet Sveučilišta u Zagrebu, 2018. str. 15-15

• Tomin, Marko ; Tomić, Sanja | Mehanizam hidrolize peptidne veze na modelnom sustavu DPP III iz Bacteroides thetaiotaomicron // Simpozij studenata doktorskih studija PMF-a : knjiga sažetaka. | Zagreb: Prirodoslovno-matematički fakultet Sveučilišta u Zagrebu, 2018. str. 36-36

  www.pmf.unizg.hr

• Ćehić, Mirsada ; Suć, Josipa ; Jerić, Ivanka ; Piantanida, Ivo ; Tomić, Sanja ; Schmuck, Carsten | Experimental study of new guanidiniocarbonyl-pyrrole-aryl conjugates as potential inhibitors of human dipeptidyl peptidase III // 4th Young Medicinal Chemist Symposium (EFMC-YMCS 2017) : Book of Abstracts. | Beč: EFMC-YMCS, 2017. str. 141-141

  www.ldorganisation.com

• Matić, Sara ; Karačić, Zrinka ; Gruber, Karl ; Tomić, Sanja | Combination of SAXS and molecular modeling in structure-function characterization of the plant DPP III orthologue // 7th Visegrad Symposium on Structural Systems Biology : Program & Abstracts. | Nové Hrady, 2017. str. P6-P6

  nh.cas.cz

• Tomin, Marko ; Tomić, Sanja | Computational study of dipeptidyl peptidase III from thermophile Caldithrix abyssi // Math/Chem/Comp 2017, 29th MC2 Conference : Book of Abstracts. | 2017. str. 16-16

  www.pmf.unizg.hr

• Tomin, Marko ; Tomić, Sanja | Conformational study of Bacteroides thetaiotaomicron dipeptidyl peptidase III // Conference proceedings, ICBMB 2016. | 2016. str. 23-23

  biochem.conference-site.com

• Tomin, Marko ; Tomić, Sanja ; Sabljić, Igor | Conformational study of Bacteroides thetaiotaomicron dipeptidyl peptidase III // Simpozij studenata doktorskih studija PMF : Knjiga sažetaka. | Zagreb, 2016. str. 40-40

  drive.google.com

• Tomić, Sanja | Understanding substrate recognition and function of human dipeptidyl peptidase III // Regional Biophysics Conference (RBC2016) - Book of Abstracts / EUT Edizioni Università di Trieste (ur.). | Trst: EUT Edizioni Università di Trieste, 2016. str. 9.-9

  www.openstarts.units.it

• Tomin, Marko ; Tomić, Sanja ; Sabljić, Igor | Bacteroides thetaiotaomicron dipeptidyl peptidase III complexes with synthetic substrates // ECS3 Book of Abstracts. | Zagreb: Hrvatska udruga kristalografa, 2016. str. 14-14

  ecs3.ecanews.org

• Tomić, Sanja ; Tomić, Antonija ; Gundić, Mario | Influence of ligands and protein binding to structure and flexybility of human dipeptidyl peptidase III // Conference proceedings of ICBMB 2016, International Conference on Biochemistry and Molecular Biology. | 2016. str. 9-9

  biochem.conference-site.com

• Bertoša, Branimir ; Kazizić, Saša ; Mikleušević, Goran ; Štefanić, Zoran ; Narczyk, Marta ; Wielgus- Kutrowska, Beata ; Hajnić, Matea ; Leščić Ašler, Ivana ; Tomić, Sanja ; Tarnowski, Krzysztof et al. | Role of subunit-subunit interactions in the catalysis conducted by hexameric purine nucleoside phosphorylase. | 2015. str. 1-1

• Grabar Branilović, Marina; Tomić, Sanja | Computational study of the IRES subdomain IIa structural plasticity and the ligand binding affinity // Chemistry towards Biology 7th Central European Conference - Book of Abstracts. | Katovice, 2014. str. P10-P10

• Tomić, Antonija ; Tomić, Sanja | The recent findings on the zinc ion coordination and ligand binding in the human DPP III active site – implication on the chemical reaction mechanism // XXIII. hrvatski skup kemičara i kemijskih inženjera, knjiga sažetaka. | Zagreb: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI), 2013. str. 177-177

• Tomić, Sanja ; Tomić, Antonija ; Brkić, Hrvoje | Elucidation of metal ion-binding sites in proteins // 6th Central Europe Conference - Abstracts of scientific contributions. | Trst: Universita degli studi di Trieste, 2013. str. oc15-oc15

• Tomić, Antonija ; Tomić, Sanja | Molecular Mechanics - Poisson Boltzmann Surface Area calculations using AMBER program package - application to the human dipeptidyl petidase III // Computational Electrostatics for Biological Applications - Book of Abstract. | 2013. str. 39-39

• Maršavelski, Aleksandra ; Tomić, Sanja | Substrate selectivity of atypical methanogenic-type Seryl-tRNA synthetases-computational approach // The 11th Greta Pifat-Mrzljak International School of Biophysics. | 2012

• Tomić, Sanja ; Tomić, Antonija ; Gonzalez, Miguel | Molecular dynamics based studies on human DPP III revealed determinants for its broad substrate selectivity. | 2012

• Tomić, Sanja ; Grabar, Marina ; Piantanida, Ivo | Guanidiniocarbonyl-pyrrole-aryl conjugates as nucleic acid sensors: switch of binding mode and spectroscopic response's // Book of Abstracts Regional Biophysical Conference 2012. | Beograd: Društvo biofizičara Srbije, 2012. str. 13-13

• Tomić, Antonija ; Tomić, Sanja | Further study of the zinc coordination in the active site of the human DPP III - ONIOM calculations // Book of abstracts, 11th Greta Pifat-Mrzljak International School of Biophysics, Biomolecular complexes and assemblies. | Zagreb: Institut Ruđer Bošković i Hrvatsko biofizičko društvo, 2012. str. 104-104

  www.irb.hr

• Tomić, Antonija ; Tomić, Sanja | QM/MM study of the zinc coordination in the active site of the human DPP III // Knjiga sažetaka - IX. Susret mladih kemijskih inženjera. | Zagreb: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI), 2012. str. 173-173

• Bertoša, Branimir ; Tomić, Sanja ; Aleksić, Maja ; Karminski-Zamola, Grace | Investigation of anticancer activity of heterocyclic amides and quinolones using 3D-QSAR analysis // Ninth Triennial Congress of the World Association ot Theoretical and Computational Chemists. | Santiago de Compostela, 2011. str. PII 016-x

• Tomić, Antonija ; Tomić, Sanja | MD simulations showed large conformational changes of the human free DPP III // Book of Abstracts - The Conference on Molecular Simulations in Biosystems and Material Science. | Konstanz, 2011. str. 72-72

  cms.uni-konstanz.de

• Grabar, Marina ; Tomić, Sanja ; Tumir Marija, Lidija ; Piantanida, Ivo | Molecular modeling of new permanently charged phenanthridinium-nucleobase conjugates in complexes with double stranded polynucleotides // Ninth Triennial Congress of the World Association ot Theoretical and Computational Chemists - Book of Abstracts. | Santiago de Compostela, 2011. str. PII 017-x

• Tomić, Sanja ; Brkić, Hrvoje ; Ramek, Michael ; Buongiorno, Daniele ; Straganz, Grit | Influence of The Hydrophobic Residues on The Dke1 Activity. | 2011. str. 1-1

• Tomić, Antonija ; Tomić, Sanja | Human dipeptidyl-peptidases (h.DPP III), sampling the substrate binding site - computational analysis // Book of Abstracts of the "Fourth Humboldt Conference on Computational Chemistry". | Sofija, 2010. str. 63.-63.

• Tomić, Antonija ; Tomić, Sanja | Natural vs. synthetic peptides binding to human dipeptidyl-peptidases (DPP III), computational insight // Book of Abstracts of the "Australia-Croatia Workshop on Antimicrobial Peptides and Summer School in Biophysics PhD Programme: AMP 2010". | Split: Faculty of Science, University of Split, 2010. str. 49.-49.

• Burja, Bojan ; Čimbora-Zovko, Tamara ; Tomić, Sanja ; Jelušić, Tihana ; Kočevar, Marjan ; Polanc, Slovenko ; Osmak, Maja | Pyrazolone-fused combretastatins and their precursors: synthesis, cytotoxicity, antitubulin activity and molecular modeling studies // Book od Abstract HDIR-1 From Bench to Clinic. | Zagreb: Hrvatsko društvo za istraživanje raka (HDIR), 2010. str. 73-73

• Bertoša, Branimir ; Tomić, Sanja ; Aleksić, Maja ; Karminski-Zamola, Grace | QSAR analysis and proposal of new heterocyclic compounds with potential antitumor activity // The 5th Central European Conference - Chemistry towards Biology. | Zagreb: Institut Ruđer Bošković, 2010. str. 66-66

• Grabar, Marina ; Tomić, Sanja ; Tumir, Lidija-Marija ; Piantanida, Ivo ; Crnolatac, Ivo | Molecular modelling of phosphonium cyanine dyes in complex with DNA // The 5th Central European Conference - Chemistry towards Biology / Abramić, Marija ; Maksić, Zvonimir ; Salopek-Sondi, Branka et al. (ur.). | Zagreb: Institut Ruđer Bošković, 2010. str. 85-85

• Grabar, Marina ; Tomić, Sanja ; Tumir, Lidija-Marija ; Piantanida, Ivo ; Crnolatac, Ivo ; Deligeorgiev, Todor ; Vasilev, Alexey ; Kaloyanova, Stefka | Interaction of phosphonium cyanine dyes with DNA // Abstracts of the Fourth Humboldt Conference on Computational Chemistry. | Sofija, 2010. str. 62-x

• Bertoša, Branimir ; Aleksić, Maja ; Karminski-Zamola, Grace ; Tomić, Sanja | QSAR analysis of heterocyclic amides and quinolones with potential antitumor activity // Math/Chem/Comp 2010, Program & book of abstracts. | Zagreb: Institut Ruđer Bošković, 2010. str. 7-7

• Tomić, Antonija ; Abramić, Marija ; Smith, David ; Tomić, Sanja | Molecular dynamics simulations of ligands binding into the active site of human dipeptidyl-peptidases (DPPIII) // Book of Abstracts of the EMBO Young Scientists Forum. | 2009. str. 53-53

  bioinfo.hr

• Brkić, Hrvoje ; Grit, Straganz ; Tomić, Sanja ; Ramek, Michael | Molecular Modeling of Acetylacetone Dioxygenase from Acinobacter Jonsoii. | 2009

• Grabar, Marina ; Tumir, Lidija-Marija ; Piantanida, Ivo ; Tomić, Sanja | Computational approach to specificity of intercalators toward nucleotides // Book of Abstracts of the Tenth international summer school on biophysics - supramolecular structure and function. | Rovinj, 2009. str. 105-x

• Grabar, Marina ; Tumir, Lidija-Marija ; Piantanida, Ivo ; Tomić, Sanja | Computational and spectroscopic studies of intercalators and their interaction with nucleotides // Book of Abstracts of The third Adriatic Meeting on computational Solutions in the Life Sciences. | Zagreb: Institut Ruđer Bošković, 2009. str. 56-x

• Savić, Bojana ; Tomić, Sanja ; Magnus, Volker ; Gruden, Kristina ; Barle, Katja ; Grenković, Renata ; Salopek-Sondi, Branka ; Jutta Ludwig-Müller | Auxin amidohydrolases from Brassica rapa cleave conjugates of indole propionic and indole butyric acid as preferable substrates: A biochemical and modeling approach // ACPD 2009, Auxins and Cytokinins in Plant Development, Book of Abstracts. | Prag, 2009. str. 22-22

• Tomić, Antonija ; Abramić, Marija ; Smith, David ; Tomić, Sanja | Computational and experimental approach to the study of ligands binding into the active site of the human dipeptidyl-peptidases (DPPIII) // Book of Abstracts of the "The 3rd Adriatic Meeting On Computational Solutions in the Life Sciences". | Zagreb: Centre for Computational Solutions in the Life Sciences, Ruđer Bošković Institute, 2009. str. 77-77

  www.compsols.irb.hr

• Grabar, Marina ; Tumir, Lidija-Marija ; Piantanida, Ivo ; Tomić, Sanja | Bisphenanthridinium-nucleobase conjugates – molecular modelling and spectroscopic approach // Book of Abstracts of the EMBO Young Scientists Forum. | Zagreb, 2009

• Grabar, Marina ; Tumir, Lidija-Marija ; Piantanida, Ivo ; Tomić, Sanja | Molecular modelling of bisphenanthridinium- nucleobase conjugates // Book of Abstracts of the International Conference and Biophysics Summmer School From Solid State to Biophysics IV. | École polytechnique fédérale de Lausanne (EPFL), 2008

• Grabar, Marina ; Tumir, Lidija-Marija ; Piantanida, Ivo ; Tomić, Sanja | Molecular modelling of bisphenanthridinium- nucleobase conjugates // Book of Abstracts of the MATH/CHEM/COMP - The Dubrovnik International Course on the Interfaces among Mathematics, Chemistry and Computer Sciences. | Zagreb: Institut Ruđer Bošković, 2008. str. 20-x

• Šikić, Krešimir ; Tomić, Sanja ; Jeren, Branko | The protein structure flexibility // Proceedings of 23rd International Course on the Interfaces among Mathematics, Chemistry & Computer Sciences. | Zagreb, 2008

• Tomić, Sanja | Force field based methods for computational study of macromolecules // Hottest Topics in Protein Research : Book of abstracts. | Zagreb, 2008. str. 7-8

• Tomić, Sanja | Combined 3D QSAR and QM/MM Study of the Burkholderia cepacia Lipase Enantioselectivity // Protein Design and Evolution for Biocatalysis, Book of Abstracts. | 2008

• Savić, Bojana ; Tomić, Sanja ; Magnus, Volker ; Salopek-Sondi, Branka | BrILL2, auksin amidohidrolaza iz kineskog kupusa (Brassica rapa L.) // Zbornik sažetaka. | Zagreb: Institut Ruđer Bošković, 2008. str. 74-74

• Salopek-Sondi, Branka ; Savić, Bojana ; Tomić, Sanja ; Magnus, Volker | Insight into structure and function of the plant enzyme, auxin amido-hydrolase // Book of abstracts of the HDBMB 2008. | Osijek: Hrvatsko Društvo za Biotehnologiju, 2008. str. 130-130

• Vujasinović, Ines ; Bertoša, Branimir ; Tomić, Sanja ; Mlinarić-Majerski, Kata | Influence of the rigid spacer to macrocyclization of poly(thialactones): Synthesis and computational analysis // IUPAC Conference Santiago de Compostela. | Santiago de Compostela, 2008

• Tomić, Sanja ; Ceilinger, Igor ; Janežić, Dušanka ; Hodošček, Milan | Towards understanding enentio-selective enzyme catalysed chemical transformation of pro-drugs // Abstracts book. | Atena: University of Athens, 2008. str. 35-35

• Tomić, Sanja ; Ceilinger, Igor ; Hodošček, Milan ; Janežić, Dušanka | QM/MM Study of the Burkholderia cepacia Lipase Catalyzed Secondary Alcohol Esterification // Book of Abstracts - The Conference on Molecular Simulations in Biosystems and Material Science. | Konstanz: Universitaet Konstanz, 2008. str. 92-92

• Tomić, Sanja | Proučavanje međudjelovanja proteina korištenjem računala // Knjiga sažetaka 5. znanstvenog sastanka Hrvatskog fizikalnog društva. | Zagreb, 2007. str. 56-x

• Šikić, Krešimir ; Tomić, Sanja ; Branko, Jeren | New methods of finding flexibility in proteins // The 2th Opatija Meeting on Computational Solutions in the Life Sciences. | Zagreb: Institut Ruđer Bošković, 2007. str. 86-x

• Dokmanić, Ivan ; Šikić, Mile ; Tomić, Sanja | Correlating protein surface shape and hydrophobicity using spherical harmonical expansions // Book of abstracts, The 2nd Opatija Meeting on Computational Solutions in the Life Sciences. | Zagreb: Institut Ruđer Bošković, 2007. str. 69-69

• Bertoša, Branimir ; Wade, Rebecca ; Kojić-Prodić, Biserka ; Tomić, Sanja | Computational simulations of ABP1 and its interactions with auxin-related molecules // The 2th Opatija Meeting on Computational Solutions in the Life Sciences. | Zagreb: Institut Ruđer Bošković, 2007. str. 30-30

• Tomić, Sanja ; Dokmanić, Ivan | Divalent metal cations in proteins: abundance, coordination, function // Book of Abstracts: 16th CROATIAN-SLOVENIAN CRYSTALLOGRAPHIC MEETING. | Zagreb: Hrvatska akademija znanosti i umjetnosti (HAZU), 2007. str. 54-54

• Tomić, Sanja ; Wade, Rebecca ; Wang, Ting ; Bertoša, Branimir ; Gabdoulline, Razif | The protein-protein interactions- molecular modelling study // 6th Central European Symposium on Theoretical Chemistry - Book of Abstracts. | Graz: TU-Graz, 2007. str. L12-L12

• Tomić, Sanja ; Bertoša, Branimir ; Wade, C. Rebecca | Non covalent interactions in protein complexes // Humboldt Conference On Noncovalent Interactions. | Vršac: AvH, 2007. str. 12-12

• Bertoša, Branimir ; Tomić, Sanja ; Kojić-Prodić, Biserka | Investigation of Auxin Binding to ABP1 by Computational Methods // Supramolecular Structure and Function. | Zagreb, 2006. str. 99-x

• Tomić, Sanja ; Bertoša, Branimir | Study of protein specificity and selectivity by computational methods // Third Humboldt Conference on Computational Chemistry. | Sofija: Avangard Prima, 2006. str. 26-26

• Ceilinger, I. ; Tomić, Sanja ; Hodošček, M. ; Janežič, D. | QM/MM Study of the Burkholderia cepacia Lipase Catalysed Secondary Alcohol Esterification // Through Science to Stability. Proceedings of the 1^st South Eastern European Workshop on Practical Approaches to Computational Biology. | Zagreb: Institut Ruđer Bošković, 2005. str. 43-43-x

• Tomić, Sanja ; Ramek, Michael | Study of Lipase Enantioselectivity // IXX. hrvatski skup kemičara i kemijskih inženjera. Knjiga sažetaka. | Zagreb: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI), 2005. str. 89-89

• Bertoša, Branimir ; Tomić, Sanja ; Babić, Darko | Molecular Dynamics Simulations of Auxin Binding Protein1 // Through science to stability : 1st South Eastern European workshop on practical approaches to computational biology. | 2005. str. 60-60-x

• Bertoša, Branimir ; Tomić, Sanja | INVESTIGATION OF PROTEIN-PROTEIN INTERACTIONS USING COMBINE ANALYSIS // XIX. hrvatski skup kemičara i kemijskih inžinjera, Knjiga sažetaka. | Zagreb, 2005. str. 217-x

• Kojić-Prodić, Biserka ; Kovačić, Filip ; Wilhelm, Susanne ; Tomić, Sanja ; Jager, Karl-Erich | Bioinformatics Approach to Characterisation of SGNH Hydrolase // XX Congress of International Union of Crystallography, Book of Abstracts, Acta Cryst A61, Supplement. | Firenza : München: International Union of Crystallography, 2005. str. C42-x

  journals.iucr.org

• Tomić, Sanja | Theoretical study of enzyme specificity and selectivity // Regional Biophysics Meeting 2005: Book of abstracts. | Slovenian Biophysical Society, 2005. str. 10-10-x

• Tomić, Sanja | Rational Approach In Modifying Enzyme Specificitity // Devide & Conquere: Assembling Leads from Fragments- Disassembling Protein Complexes. | University of Marburg, 2005. str. 43-43-x

• Tomić, Sanja ; Bertoša, Branimir ; Kojić-Prodić, Biserka | Study of lipase stereoselectivity by computational methods // 2nd Central European Conference Chemistry towards Biology. | Graz: Universitaet Graz, 2004. str. 67-67-x

• Tomić, Sanja ; Bertoša, Branimir | Proučavanje specifičnosti enzima računskim metodama // Znanstvena konferencija promicanje ideja fizike. | Zagreb: Institut za fiziku, 2004. str. 19-19-x

• Tomić, Sanja | Changing enzyme specificity // BRIJUNI Conference (Matter under extreme conditions). | Zagreb: Institut Ruđer Bošković, 2004

• Bertoša, Branimir ; Tomić, Sanja ; Kojić-Prodić, Biserka | New classification procedure for biologically active compounds based on similarity of their molecular interactions and logP prediction // Zbornik sažetaka postera znanstvenih novaka izlaganih u inozemstvu 2002., 2003. i 2004. godine. | Zagreb, 2004. str. 15-16-x

• Wang, Ting ; Tomić, Sanja ; Gabdoulline, Razif ; Wade, Rebecca | Comparative binding energy (combine) analysis of barnase-barstar inter facial mutants // MATH/CHEM/COMP/2003: Program and Book of Abstracts. | Zagreb: Institut Ruđer Bošković, 2003. str. 92-x

• Bertoša, Branimir ; Kolossvary, Istvan ; Kojić-Prodić, Biserka ; Tomić, Sanja | Molecular modelling and 3D QSAR study on burkholderia cepacia catalysed resolution of diverse secondary alcohols. | Zagreb: Institut Ruđer Bošković, 2003. str. 9-9-x

• Tomić, Sanja ; Bertoša, Branimir ; Kojić-Prodić, Biserka | Classification of auxin related compounds based on similarity of their molecular interactions fields and logP prediction // XVIII. hrvatski skup kemičara i kemijskih inžinjera, Sažetci, abstract. | Zagreb: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI), 2003. str. 134-134-x

• Antolić, Snježana ; Dolušić, Eduard ; Bertoša, Branimir ; Kojić-Prodić, Biserka ; Magnus, Volker ; Salopek-Sondi, Branka ; Tomić, Sanja | Molecular recognition of auxins - a rational approach to plant growth regulation // Book of Abstracts, First Croatian Congress on Molecular Life Sciences (ISBN 953-6256-13-4). | Zagreb: Farmaceutsko-biokemijski fakultet Sveučilišta u Zagrebu, 2002. str. 84-84-x

• Ramek, Michael ; Tomić, Sanja | Theoretical Structure Investigation of 2-Methyl-3-Indole Acetic Acid // Conference proceeding. | Austin (TX): University of Austin, 2002. str. 00-00-x

• Bertoša, Branimir ; Tomić, Sanja ; Kojić-Prodić, Biserka | New classification procedure for biologically active compounds based on similarity of their molecular interactions and logP prediction // Humboltd research conference on computational chemistry-book of abstracts. | Sofija, 2002. str. 72-72-x

• Kojić-Prodić, Biserka ; Magnus, Volker ; Tomić, Sanja ; Antolić, Snježana ; Salopek-Sondi, Branka ; Dolušić, Eduard ; Bertoša, Branimir | Molecular recognition of the plant hormone auxin is still a puzzle // Abstracts, XIX Congress and General Assembly of the International Union of Crystallography [Acta Crystallographica A58 (Supplement)]. | Chester: International Union of Crystallography, 2002. str. C139-C139-x

• Tomić, Sanja | Molecular modeling and 3D QSAR approach to molecular recognition // CC1MLIS Book of Abstracts. | Zagreb: Farmaceutsko-biokemijski fakultet Sveučilišta u Zagrebu, 2002. str. 112-x

• Tomić, Sanja | Enantioselectivity of Burkholderia cepacia lipase towards primary and secondary alcohols: molecular modelling and 3D QSAR analysis // EURO QSAR 2002, Book of Abstracts. | Portsmouth: University of Portsmouth, 2002. str. Poster No 072-x

• Bertoša, Branimir ; Tomić, Sanja ; Ramek, M. ; Wade, R. ; Kojić-Prodić, Biserka | New classification procedure for biologically active compounds based on similarity of their molecular interactions and logP prediction // First Central European Conference: "CHEMISTRY TOWARDS BIOLOGY". | Ljubljana, 2002. str. 134-134

• Tomić, Sanja ; Luić, Marija ; Šepac, Dragan ; Leščić, Ivana ; Ljubović, Edina ; Kojić-Prodić, Biserka ; Šunjić, Vitomir | Molecular modeling of the complex of 1-phenoxy-2- butanol with acetyl -pseudomonas cepacia lipase (PCL), and its p-transition state analog in comparison with the experimental results // Rational approaches to drug design: Proceedings of the 13th European Symposium on Quantitative Structure-Activity Relationships. | Düsseldorf: Prous Science, Barcelona, 2001. str. 69-73

• Tomić, Sanja ; Luić, Marija ; Kojić-Prodić, Biserka | Influence of water molecules in the crystal structure of Pseudomonas Cepacia Lipase on secondary alcohol binding modes scoring and on model for predicting enantioselectivity // Tenth Cro-Slo crystallographic Meeting, Book of Abstracts. | Zagreb: Sveučilište u Zagrebu, 2001. str. 27-27-x

• Tomić, Sanja | Enantioselectivity of the Pseudomonas Cepacia Lipase Toward 3-(Ariloxy)-1,2-Propanediols // MATH/CHEM/COMP. | Zagreb: Institut Ruđer Bošković, 2001. str. 96-96-x

• Tomić, Sanja ; Ljubović, Edina ; Kojić-Prodić, Biserka ; Šunjić, Vitomir | Molecular Modeling of the Enantioselectivity of Pseudomonas Cepacia Lipase Towards Some Secondary and Primary Alcohols // DU 2000 NMR. | Dubrovnik: Inter-University Center, 2000. str. 45-45-x

• Ramek, Michael ; Tomić, Sanja | Theoretical Structure Investigations of 3-Indole Acetic Acid Derivatives // Conference proceeding. | Austin (TX): University of Austin, 2000. str. 00-00-x

• Tomić, Sanja ; Wade, Rebecca | QSAR-COMBINE Analysis of Nuclear Receptor-DNA Binding // DU 2000 NMR. | Dubrovnik: Inter-University Center, 2000. str. 46-46-x

• Abramić, Marija ; Kojić-Prodić, Biserka ; Leščić, Ivana ; Luić, Marija ; Ljubović, Edina ; Pigac, Jasenka ; Saenger, Wolfram ; Schroeder, Werner ; Šunjić, Vitomir ; Tomić, Sanja et al. | A contribution to understanding of enzymatic activity of bacterial lipases. // Workshop of Challenges in Crystallography of Macromolecular Assemblies. | Trst: Synchrotron Trieste, 2000. str. 24-24-x

• Abramić, Marija ; Kojić-Prodić, Biserka ; Leščić, Ivana ; Luić, Marija ; Ljubović, Edina ; Pigac, Jasenka ; Saenger, Wolfram ; Schröder, Werner ; Šunjić, Vitomir ; Tomić, Sanja et al. | "Structure is function": A contribution to understanding enzymatic activity of bacterial lipases. // Kongres hrvatskih biokemičara i molekularnih biologa, HB 2000. Knjiga sažetaka.. | Zagreb: Farmaceutsko-biokemijski fakultet Sveučilišta u Zagrebu, 2000. str. 46-46-x

• Magnus, Volker ; Antolić, Snježana ; Balón, Manuel ; Kojić-Prodić, Biserka ; Tomić, Sanja ; Vikić-Topić, Dražen | The electronic structure of auxin molecules correlates with their biological activity // EMBO Workshop on Auxin. | Calcatoggio, 2000. str. 58-58-x

• Tomić, Sanja ; Wade, Rebecca | QSAR-COMBINE analysis of nuclear receptor-DNA binding // EUKO-CC3. | Budimpešta: Hungarian Chemical Society, 2000. str. 27-x

• Ramek, Michael ; Tomić, Sanja | Ab Initio RHF Conformational Analysis of the Auxin Phytohormone 4-Methyl-3-Indole Acetic Acid // Conference proceeding. | St. Augustine (FL): University of Florida, 1999. str. 00-00-x

• Tomić, Sanja ; Kojić-Prodić, Biserka ; Šunjić, Vitomir | Enantioselectivity of acylation by Pseudomonas cepacia lipase - COMBINE analysis // 13. Darmstaedter Molecular-Modelling Workshop. | Darmstadt: Technische Universitaet Darmstadt, 1999. str. 18-x

• Ramek, Michael ; Tomić, Sanja | Conformational Analysis of the Phytohormones x-Ethyl-3-Indole Acetic Acid (x = 4, 5, 6) // Conference proceeding. | St. Augustine (FL): University of Florida, 1998. str. 00-00-x

• Kojić-Prodić, Biserka ; Antolić, Snježana ; Tomić, Sanja ; Magnus, Volker | Molecular recognition of the phytohormone auxin and related compounds // Collected Abstracts-XVII. congress and general assembly, International union of crystallography. | Seattle (WA): International Union of Crystallography, 1996. str. C417-C417-x

• Kveder, Marina ; Tomić, Sanja ; Kidrič, Jurka ; Kojić-Prodić, Biserka ; Čudić, Mare ; Horvat, Jaroslav ; Horvat, Štefica | Comparative conformational analysis of 1-(6-deoxy-1,2:3,4-di-O-isopropylidene-alpha-D-galactos-6-yl) 2,5-piperazinedione based on experimental evidences and computer modelling // Book of Abstracts. | Zagreb: Hrvatsko biokemijsko društvo, 1996. str. 72-72-x

• Antolić, Snježana ; Kojić-Prodić, Biserka ; Tomić, Sanja ; Magnus, Volker ; Cohen, Jerry D. | Structure-Activity Correlations for Ring-Fluorinated Indole-3-Acetic Acids // Program-Abstracts. 15^th International Conference on Plant Growth Substances. | Minneapolis (MN): International Plant Growth Substances Association, 1995. str. 245-245-x

• Kojić-Prodić, Biserka ; Nigović, Biljana ; Tomić, Sanja ; Ilić, Nebojša ; Magnus, Volker ; Giba, Zlatko ; Konjević, Radomir | Structural studies on 5-(n-alkyl)-substituted derivatives of the plant hormone, indol-3-ylacetic acid // Abstracts, 14th International Conference on Plant Growth Substances (IPGSA 1991). | Amsterdam: Landbouwuniversitet Wageningen, 1991. str. 68-68

Professional paper

• Tomić, Sanja | Život modeliran vodom // Fizikalni aspekti vode. | Zagreb: Prirodoslovno-matematički fakultet Sveučilišta u Zagrebu, 2008. str. 50-57

  www.hfd.hr

• Tomić, Sanja | Razotkrivanje tajni (za život važnih) molekula // Fizika u temeljima suvremene znanosti i društva. Zbornik predavanja 21. ljetne škole mladih fizičara. | Zagreb: Hrvatsko fizikalno društvo, 2005. str. 41-46-x

• Tomić, Sanja | Modelling - a connection between structure and activity // Znanstveni projekti i programi. | 2004

  www.humboldt-club.hr

Original scientific paper

• Agić, Dejan; Bešlo, Drago; Lučić, Bono; Tomić, Sanja; Blagojević, Bojana; Popović, Boris M. | Computational study on the interactions of quercetin 3-O-rutinoside with human DPP III // Book of Proceedings, 2nd International Conference on Chemo and Bioinformatics / Marković, Zoran; Filipović, Nenad (ur.). | Kragujevac: University of Belgrade, 2023. str. 629-632. doi: 10.46793/iccbi23.629a

  doidrive.google.com

• Tomić, Sanja ; Brkić, Hrvoje ; Grabar Branilović, Marina ; Tomić, Antonija ; Branimir, Bertoša ; Mile, Šikić | Proteini i nukleinske kiseline u vremenu i prostoru // Bioinformatics and biological physics: proceedings of the scientific meeting. | Zagreb: Hrvatska akademija znanosti i umjetnosti (HAZU), 2013. str. 149-157

• Šikić, Krešimir ; Tomić, Sanja ; Jeren, Branko | The protein secondary structure flexibility // Proceedings of the 2008 International Conference on Bioinformatics & Computational Biology. | 2008. str. 918-926

• Šikić, Krešimir ; Tomić, Sanja, Jeren, Branko | Identifying protein flexibility by NMA // Proceedings of the 2008 International Conference on Bioinformatics & Computational Biology. | 2008. str. 927-933

Other

• Tomić, Sanja ; Abramić, Marija ; Brkić, Hrvoje ; Tomić, Antonija | Sprega kristalografije i modeliranja u proučavanju bioloških makromolekula // Kristalografija u Hrvatskoj. | Zagreb: Hrvatska akademija znanosti i umjetnosti (HAZU), 2013. str. 129-137

Conference abstract

• Tomić, Sanja ; Kazazić, Saša ; Abramić, Marija ; Tomin, Marko ; Agić, Dejan ; Karačić, Zrinka ; Grabar-Branilović, Marina | H/D exchange and MD simulation study of dipeptidyl peptidase III intrinsic dynamics and ligand binding // European biophysics journal, 46, 2017. str. S179-S179

  link.springer.comlink.springer.com

• Tomić, Sanja ; Kovačević, Borislav ; Tomić, Antonija ; Matovina, Mihaela ; Karačić, Zrinka ; Matić, Sara ; Abramić, Marija ; Agić, Dejan | Understanding h.DPP III mechanism – an aid in rationalization of the mutants (in)activity // European biophysics journal, 46, 2017. str. S179-S179

  link.springer.comlink.springer.com

• Grabar Branilović, Marina ; Smolko, Ana ; Šupljika, Filip ; Salopek-Sondi, Branka ; Piantanida, Ivo ; Tomić, Sanja | Brassica rapa auxin-amidohydrolase: the Mn2+ binding affinities and the active site structure // European biophysics journal, 2015. str. 166-166

• Grabar Branilović, Marina ; Smolko, Ana ; Šupljika, Filip ; Salopek-Sondi, Branka ; Piantanida, Ivo ; Tomić, Sanja | The active site structure of manganese-containing Brassica rapa auxin-amidohydrolase BrILL2 // Acta crystallographica. Section A, Foundations and advances, 2015. str. 210-210. doi: 10.1107/S2053273315096849

  doi

• Tomin, Marko ; Tomić, Sanja ; Sabljić, Igor | Conformational study of Bacteroides thetaiotaomicron dipeptidyl peptidase III // Acta crystallographica. Section A, Foundations and advances, 2015. str. 209-209. doi: 10.1107/S2053273315096850

  doiecm29.ecanews.org

• Tomić, Sanja ; Tomić, Antonija | Ligand binding to the flexible metaloenzymes: protein dynamics and the active enzyme conformation // European biophysics journal, 44, Suppl. 1, 2015. str. 243-243. doi: 10.1007/s00249-015-1045-6

  doilink.springer.com

• Tomić, Sanja ; Brkić, Hrvoje ; Straganz, Grit ; Buongiorno, daniela | Non-heme iron dependent enzymes – understanding transport of iron cation in acetylacetone dioxygenase from Acinetobacter johnsoii // European biophysics journal, 2013. str. S184-S184

• Savić, Bojana ; Ludwig-Müller, Jutta ; Tomić, Sanja ; Magnus, Volker ; Salopek-Sondi, Branka | Characterization of the Brassica rapa auxin amido-hydrolase, BrILL2 // Physiologia plantarum, 2008. str. P01-065-P01-065

Unpublished conference paper

• Kekez, Ivana; Matić, Sara; Matovina, Mihaela; Tomić, Sanja; Matković-Čalogović, Dubravka | Crystallization of the Keap1-DPP III complex // Hot Topics in Contemporary Crystallography 5 - HTCC5 | Dubrovnik, Hrvatska, 16.04.2023-21.04.2023

• Karačić, Zrinka ; Šupljika, Filip ; Tomašić Paić, Ana ; Brkljačić, Lidija ; Tomić, Sanja | Role of dipeptidyl peptidase III in pain regulation through cleavage of neuropeptides // 27th Croatian Meeting of Chemists and Chemical Engineers (27HSKIKI) and 5th Symposium Vladimir Prelog | Veli Lošinj, Hrvatska, 05.10.2021-08.10.2021

  27hskiki.hkd.hr

• Matić, Sara; Matovina, Mihaela; Tomić, Sanja | Exploring the effect of mutations on interactions between Keap1 and DPP III by MD simulations // EMBO Workshop: Integrating genomics and biophysics to comprehend functional genetic variation | Torino, Italija, 08.09.2017-10.09.2017

• Tomin, Marko ; Tomić, Sanja ; Sabljić, Igor | Bacteroides thetaiotaomicron dipeptidyl peptidase III complexes with synthetic substrates // Thrid DPP III Minisymposium | Graz, Austrija, 10.02.2017-10.02.2017

  www.irb.hr

• Brkić, Hrvoje ; Straganz, Grit ; Buongirno, Daniela ; Ramek, Michael ; Tomić, Sanja | Diketone cleaving dioxygenase - theoretical study // 5th Central European Conference "Chemistry Towards Biology" | Primošten, Hrvatska, 08.09.2010-11.09.2010

• Tomić, Sanja | Modeliranje bioloških molekula i njihovih kompleksa // Bioinformatika IRB - 2004 | Zagreb, Hrvatska, 10.12.2004-10.12.2004

Doctoral thesis

• Matić, Sara | Uloga dipeptidil-peptidaze III u oksidacijskom stresu / Tomić, Sanja; Matovina, Mihaela (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2021

  repozitorij.pmf.unizg.hr

• Ćehić, Mirsada | Eksperimentalno i računalno istraživanje novih konjugata gvanidina s različitim fluoroforima kao liganada humane dipeptidil-peptidaze III / Tomić, Sanja ; Piantanida, Ivo (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2019

  dr.nsk.hr

• Tomić, Antonija | Primjena računalnih pristupa različitih stupnjeva složenosti u svrhu razumijevanja strukture, dinamike i aktivnosti ljudske dipeptidil-peptidaze III / Tomić, Sanja (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2015

  repozitorij.pmf.unizg.hr

• Grabar Branilović, Marina | Eksperimentalno utemeljeno modeliranje interakcija nukleinskih kiselina i malih molekula / Tomić, Sanja (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2014

  fulir.irb.hrrepozitorij.pmf.unizg.hr

• Brkić, Hrvoje | Proučavanje o željezu ovisnih dioksigenaza računalnim metodama / Tomić, Sanja (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2014

• Šikić, Krešimir | Algoritmi za utvrđivanje fleksibilnosti proteina na temelju konformacije i fizikalnih svojstava proteina / Jeren, Branko (mentor); Tomić, Sanja (neposredni voditelj) . | Zagreb, Fakultet elektrotehnike i računarstva, 2008

• Bertoša, Branimir | Modeliranje auksinskih molekula i njihove interakcije s veznim proteinom - ABP 1 / Tomić, Sanja (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2007

Master's thesis (university)

• Hanić, Maja | Interdisciplinarno istraživanje mutanata R620C, R623W i R623L ljudske dipeptidil-peptidaze III / Matovina, Mihaela ; Tomić, Sanja (mentor); Matić, Sara (neposredni voditelj) . | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2020

  zir.nsk.hr

• Čavka, Ivana | Računalne simulacije kompleksa ljudske dipeptidil-peptidaze III s angiotenzinom-(1-7) i njegovim stabilnim analogom / Tomić, Sanja (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2018

  urn.nsk.hr

• Tir, Nora | Simulacije molekulske dinamike kompleksa ljudske dipeptidil-peptidaze III s inhibitorima / Tomić, Sanja (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2016

  repozitorij.pmf.unizg.hr

• Šimunović, Mijo | Thermodynamics of ligand binding to auxin amidohydrolase / Cvitaš, Tomislav (mentor); Tomić, Sanja (neposredni voditelj) . | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2010

• Ceilinger, Igor | Modeliranje enzimske esterifikacije sekundarnog alkohola korištenjem QM/MM pristupa / Tomić, Sanja (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2006

Other

• Šikić, Krešimir ; Jeren, Branko ; Tomić, Sanja | THE PROTEIN SECONDARY STRUCTURE FLEXIBILITY // MATH/CHEM/COMP 2008 - Book of Abstracts, 2008