Dr. Sanja Tomić

Head of laboratory

Vanjski Suradnik

E-mail

Sanja.Tomic@irb.hr

Academic title

Professor

Department

Division of Organic Chemistry and Biochemistry

Address

Division of Organic Chemistry and Biochemistry
Ruđer Bošković Institute
Bijnička 54
HR-10000 Zagreb
Croatia

Curriculum vitae

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Research Areas

Interdisciplinarne prirodne znanosti Biokemija i molekularna biologija Biofizika i medicinska fizika

Projects

Projects since 2003

Coordinator

2002. – 2004. bilateral project with Germany (R.C. Wade), 'Vorhersagen zur Selectivität, Regulierung und Inhibition von Enzymen durch COMBINE Analyse',

2002. – 2003. bilateral project with Austria (M. Ramek), 'Combinedab initio, molecular mechanics, molecular dynamics and QSAR approach to plant hormone auxins'.

2004. – 2005. bilateral project with Austria (M. Ramek), 'Combined application of quantum mechanics and molecular mechanics methods in study of molecules important in biology and biotechnology '.

2005. – 2006. bilateral project with Slovenia (D. Janežič) 'Computational simulations of protein structure and dynamics'.

2007. – 2008. bilateral project with Slovenia (D. Janežič) 'Study of protein structure and dynamics by computational methods '.

'Proučavanje strukture i dinamike proteina računalnim metodama'.

2008. – 2010. bilateral project with Austria (Grit Daniele Stragaz), 'Reactivity of metal centres in proteins - theoretical study '.

2009 – 2010. bilateral project with Slovenia (Milan Hodošček), 'Theoretical study of reactivity of metal centers in proteins'

2007 – 2013. MZOŠ project ‘Computational study of bio-macromolecules and development of new algorithms’ (098-1191344-2860)

2012 – 2015 'Alexander von Humboldt, Research Group Linkage' programm: 'Study of plant enzymes from metallopeptidase families M20 and M49’

2014 – 2017 HRZZ project: 'Flexibility, activity and structure correlations in the dipeptidyl peptidase III family' (01.07.2014-31.10.2017)

2016 – 2017 Bilateral project with Austria (Karl Gruber, TU, Graz), 'AnInterdisciplinary Study on Atypical Dipeptidyl Peptidases III (DPPs III) Structure and Dynamics '.

2018 - HRZZ project: 'Biological relevance of dipeptidyl peptidase III and its impact on human health DPP3BioRe’, in process of negotiation.'

Featured Publications

Dokmanić I., Šikić M., Tomić S.*, Correlation between the metal ion type, coordination number and the amino acid residues involved in the coordination, Acta Cryst. D, D64 (2008), 257-263.

Tomić, A; Gonzalez, M.; Tomić, S.* The large scale conformational change of the human DPP III – substrate prefers the "closed" form, Journal of chemical information and modeling. 52 (2012); 1583-1594.

Tomić, A. and Tomić, S.* Hunting the human DPP III active conformation: combined thermodynamic and QM/MM calculations, Dalton transactions. 43 (2014); 15503-15514.

Tomić A., Kovačević B.* and Tomić S.*, Concerted nitrogen inversion and hydrogen bonding to Glu451 are responsible for protein-controlled suppression of the reverse reaction in the human DPP III, Physical Chemistry Chemical Physics (2016) 18; 27245-27256.

Sabljić I, Tomin M, Matovina M, Sučec I, Tomašić Paić A, Tomić A, et al. The first dipeptidyl peptidase III from a thermophile: Structural basis for thermal stability and reduced activity. PLoS ONE 13(2) (2018), e0192488. https://doi.org/10.1371/journal.pone.0192488.

Kazazić S., Karačić Z., Sabljić I., Agić D., Tomin M., Abramić M., Dadlez M, Tomić A., Tomić S. Conservation of the conformational dynamics and ligand binding within M49 enzyme family. RSC Adv. 8 (2018), 13310-13322.

Tomić A., Horvat G., Ramek M., Agić D., Brkić H., Tomić S.* New zinc ion parameters suitable for classical MD simulations of zinc metallo-peptidases. Journal of Chemical Information and Modeling (2019) DOI: 10.1021/acs.jcim.9b00235.

Publications - editorial books

Zbornik radova s konferencije

The 5th Central European Conference - Chemistry towards Biology / Abramić, Marija ; Maksić, Zvonimir ; Salopek-Sondi, Branka et al. (ur.). Zagreb: Institut Ruđer Bošković, 2010
The 3rd Adriatic Meeting on Computational Solutions in Life Sciences : book of abstracts / Babić, Darko ; Došlić, Nadja ; Smith, David et al. (ur.). Zagreb: Institute of Computational Life Sciences (ICLS), 2009
The 2nd Opatija Meeting on Computational Solutions in Life Sciences : book of abstracts / Babić, Darko ; Došlić, Nadja ; Smith, David et al. (ur.). Zagreb: Institute of Computational Life Sciences (ICLS), 2007

Publications - book chapters

Izvorni znanstveni rad

Tomić, Sanja | Enantioselectivity of Burkholderia cepacia lipase towards primary and secondary alcohols: molecular modelling and 3D QSAR analysis // Designing drugs and crop protectants: processes, problems and solutions. | Oxford: Wiley-Blackwell, 2003. str. 326-328-x
Tomić, Sanja ; Nillson, Lennart ; Wade, Rebecca | Combine and Free-Wilson QSAR analysis of nuclear receptor-DNA binding // Molecular Modeling and Prediction of Bioactivity. | New York (NY): Kluwer Academic Publishers ; Plenum Publishers, 2000. str. 269-270-x

Publications - journal articles

Izvorni znanstveni rad

Filić, Želimira; Bielen, Ana; Šarić, Ela; Ćehić, Mirsada; Crnolatac, Ivo; Tomić, Sanja; Vujaklija, Dušica; Abramić, Marija | Evaluation of the Structure–Function Relationship of SGNH Lipase from Streptomyces rimosus by Site-Directed Mutagenesis and Computational Approach // International journal of molecular sciences, 25 (2024), 1; 595, 17. doi: 10.3390/ijms25010595
doifulir.irb.hrwww.mdpi.com
Agić, Dejan; Karnaš, Maja; Tomić, Sanja; Komar, Mario; Karačić, Zrinka; Rastija, Vesna; Bešlo, Drago; Šubarić, Domagoj; Molnar, Maja | Experimental and computational evaluation of dipeptidyl peptidase III inhibitors based on quinazolinone-Schiff's bases // Journal of biomolecular structure & dynamics, 41 (2023), 16; 7567-7581. doi: 10.1080/07391102.2022.2123044
doiwww.tandfonline.com
Matovina, Mihaela; Tomašić Paić, Ana; Tomić, Sanja; Brkić, Hrvoje; Horvat, Lucija; Barbarić, Lea; Filić, Vedrana; Pinterić, Marija; Jurić, Snježana; Kussayeva, Akmaral | Identification of SH2 Domain-Containing Protein 3C as a Novel, Putative Interactor of Dipeptidyl Peptidase 3 // International journal of molecular sciences, 24 (2023), 18; 14178, 19. doi: 10.3390/ijms241814178
doiwww.mdpi.comfulir.irb.hr
Matić, Antonia; Šupljika, Filip; Brkić, Hrvoje; Jurasović, Jasna; Karačić, Zrinka; Tomić, Sanja | Identification of an Additional Metal-Binding Site in Human Dipeptidyl Peptidase III // International journal of molecular sciences, 24/2023 (2023), 16; 1-23. doi: https://doi.org/10.3390/ijms241612747
doiwww.mdpi.comfulir.irb.hr
Tomić, Antonija ; Karačić, Zrinka ; Tomić, Sanja | Influence of Mutations of Conserved Arginines on Neuropeptide Binding in the DPP III Active Site // Molecules, 28 (2023), 4; 1976, 17. doi: 10.3390/molecules28041976
doiwww.mdpi.comfulir.irb.hr
Karačić, Zrinka ; Šupljika, Filip ; Tomić, Antonija ; Brkljačić, Lidija ; Tomašić Paić, Ana ; Ćehić, Mirsada ; Tomić, Sanja | Neuropeptides, substrates and inhibitors of human dipeptidyl peptidase III, experimental and computational study — A new substrate identified // International journal of biological macromolecules, 220 (2022), 1390-1401. doi: 10.1016/j.ijbiomac.2022.09.119
doiwww.sciencedirect.comfulir.irb.hr
Matić, Sara ; Tomašić Paić, Ana ; Sobočanec, Sandra ; Pinterić, Marija ; Pipalović, Goran ; Martinčić, Monika ; Matovina, Mihaela ; Tomić, Sanja | Interdisciplinary study of the effects of dipeptidyl-peptidase III cancer mutations on the KEAP1-NRF2 signaling pathway // International journal of molecular sciences, 23 (2022), 4; 1994, 15. doi: 10.3390/ijms23041994
doiwww.mdpi.comwww.ncbi.nlm.nih.govfulir.irb.hr
Zonjić, Iva ; Tumir, Lidija-Marija ; Crnolatac, Ivo ; Šupljika, Filip ; Racané, Livio ; Tomić, Sanja ; Radić Stojković, Marijana | Recognition of ATT Triplex and DNA:RNA Hybrid Structures by Benzothiazole Ligands // Biomolecules, 12 (2022), 3; 1600173, 20. doi: 10.3390/biom12030374
doiwww.mdpi.comdoi.orgfulir.irb.hr
Tomić, Antonija ; Tomić, Sanja | Demystifying DPP III Catalyzed Peptide Hydrolysis— Computational Study of the Complete Catalytic Cycle of Human DPP III Catalyzed Tynorphin Hydrolysis // International journal of molecular sciences, 23 (2022), 3; 1858, 24. doi: 10.3390/ijms23031858
doiwww.mdpi.comdoi.orgfulir.irb.hr
Ban, Željka ; Karačić, Zrinka ; Tomić, Sanja ; Amini, Hashem ; Marder, Todd B. ; Piantanida, Ivo | Triarylborane Dyes as a Novel Non‐Covalent and Non‐Inhibitive Fluorimetric Markers for DPP III Enzyme // Molecules, 26 (2021), 4816, 20. doi: 10.3390/molecules26164816
doiwww.mdpi.comdoi.orgfulir.irb.hr
Trnski, Diana ; Sabol, Maja ; Tomić, Sanja ; Štefanac, Ivan ; Mrčela, Milanka ; Musani, Vesna ; Rinčić, Nikolina ; Kurtović, Matea ; Petrić, Tina ; Levanat, Sonja et al. | SHH-N non-canonically sustains androgen receptor activity in androgen-independent prostate cancer cells // Scientific reports, 11 (2021), 1; 14880, 11. doi: 10.1038/s41598-021-93971-6
doiwww.nature.comdoi.orgfulir.irb.hr
Tomić, Antonija ; Brkić, Hrvoje ; Matić, Antonia ; Tomić, Sanja | Unravelling the inhibitory zinc ion binding site and the metal exchange mechanism in human DPP III // PCCP. Physical chemistry chemical physics, 23 (2021), 13267-13275. doi: 10.1039/D1CP01302E
doipubs.rsc.orgdoi.org
Agić, Dejan ; Karnaš, Maja ; Šubarić, Domagoj ; Lončarić, Melita ; Tomić, Sanja ; Karačić, Zrinka ; Bešlo, Drago ; Rastija, Vesna ; Molnar, Maja ; Popović, Boris M. et al. | Coumarin derivatives act as novel inhibitors of human dipeptidyl peptidase III: combined in vitro and in silico study // Pharmaceuticals, 14 (2021), 6; 540, 19. doi: 10.3390/ph14060540
doiwww.mdpi.comfulir.irb.hr
Lončar, Borka ; Perin, Nataša ; Mioč, Marija ; Boček, Ida ; Grgić, Lea ; Kralj, Marijeta ; Tomić, Sanja ; Radić Stojković, Marijana ; Hranjec, Marijana | Novel amino substituted tetracyclic imidazo[4,5-b]pyridine derivatives: Design, synthesis, antiproliferative activity and DNA/RNA binding study // European journal of medicinal chemistry, 217 (2021), 113342, 18. doi: 10.1016/j.ejmech.2021.113342
doiwww.sciencedirect.comdx.doi.org
Ferger, Matthias ; Ban, Željka ; Krošl, Ivona ; Tomić, Sanja ; Dietrich, Lena ; Lorenzen, Sabine ; Rauch, Florian ; Sieh, Daniel ; Friedrich, Alexandra ; Griesbeck, Stefaine et al. | Bis(phenylethynyl)arene Linkers in Tetracationic Bis-triarylborane Chromophores Control Fluorimetric and Raman Sensing of Various DNAs and RNAs // Chemistry : a European journal, 27 (2021), 16; 5142-5159. doi: 10.1002/chem.202005141
doichemistry-europe.onlinelibrary.wiley.comdoi.orgfulir.irb.hr
Matić, Sara ; Kekez, Ivana ; Tomin, Marko ; Bogár, Ferenc ; Šupljika, Filip ; Kazazić, Saša ; Hanić, Maja ; Jha, Shalinee ; Brkić, Hrvoje ; Bourgeois, Benjamin et al. | Binding of dipeptidyl peptidase III to the oxidative stress cell sensor Kelch-like ECH- associated protein 1 is a two-step process // Journal of biomolecular structure & dynamics, 39 (2021), 18; 6870-6881. doi: 10.1080/07391102.2020.1804455
doiwww.tandfonline.com
Tomic, S ; Chughtai, N ; Ali, S | SOCS-1, -2, -3: selective targets and functions downstream of the prolactin receptor // Molecular and cellular endocrinology, 158 (1999), 1-2; 45-54. doi: 10.1016/s0303-7207(99)00180-x
doi
Tomic, S ; Chughtai, N ; Ali, S | SOCS-1, -2, -3: selective targets and functions downstream of the prolactin receptor // Molecular and cellular endocrinology, 158 (1999), 1-2; 45-54. doi: 10.1016/s0303-7207(99)00180-x
doi
Ban, Željka ; Griesbeck, Stefanie ; Tomić, Sanja ; Nitsch, Jörn ; Marder, Todd ; Piantanida, Ivo | A quadrupolar bis‐triarylborane chromophore as a fluorimetric and chirooptic probe for simultaneous and selective sensing of DNA, RNA and proteins // Chemistry : a European journal, 26 (2020), 2195-2203. doi: 10.1002/chem.201903936
doionlinelibrary.wiley.comdoi.orgfulir.irb.hr
Ćehić, Mirsada ; Suć Sajko, Josipa ; Karačić, Zrinka ; Piotrowski, Patryciusz ; Šmidlehner, Tamara ; Jerić, Ivanka ; Schmuck, Carsten ; Piantanida, Ivo ; Tomić, Sanja | The guanidiniocarbonylpyrrole - fluorophore conjugates as theragnostic tools for DPP III monitoring and inhibition // Journal of biomolecular structure & dynamics, 38 (2020), 13; 3790-3800. doi: 10.1080/07391102.2019.1664936
doiwww.tandfonline.comdoi.org
Tomić, Antonija ; Horvat, Gordan ; Ramek, Michael ; Agić, Dejan ; Brkić, Hrvoje ; Tomić, Sanja | New zinc ion parameters suitable for classical MD simulations of zinc metallo-peptidases // Journal of chemical information and modeling, 59 (2019), 8; 3437-3453. doi: 10.1021/acs.jcim.9b00235
doipubs.acs.orgdoi.org
Bistrović Popov, Andrea ; Stolić, Ivana ; Krstulović, Luka ; Taylor, Martin C. ; Kelly, John M. ; Tomić, Sanja ; Tumir, Lidija-Marija ; Bajić, Miroslav ; Raić-Malić, Silvana | Novel symmetric bis-benzimidazoles: Synthesis, DNA/RNA binding and antitrypanosomal activity // European journal of medicinal chemistry, 173 (2019), 63-75. doi: 10.1016/j.ejmech.2019.04.007
doiwww.sciencedirect.comdoi.org
Tomin, Marko ; Tomić, Sanja | Oxidase or peptidase? A computational insight into a putative aflatoxin oxidase from Armillariella tabescens // Proteins, 87 (2019), 5; 390-400. doi: 10.1002/prot.25661
doionlinelibrary.wiley.com
Tomin, Marko ; Tomić, Antonija ; Kovačević, Borislav ; Tomić, Sanja | The Mechanism of Peptide Hydrolysis Catalysed by Dipeptidyl Peptidase III from Bacteroides thetaiotaomicron // Croatica chemica acta, 91 (2018), 2; 187-193. doi: 10.5562/cca3343
doihrcak.srce.hrfulir.irb.hr
Kazazić, Saša ; Karačić, Zrinka ; Sabljić, Igor ; Agić, Dejan ; Tomin, Marko ; Abramić, Marija ; Dadlez, Michal ; Tomić, Antonija ; Tomić, Sanja | Conservation of the conformational dynamics and ligand binding within M49 enzyme family // RSC Advances, 8 (2018), 24; 13310-13322. doi: 10.1039/c7ra13059g
doipubs.rsc.orgpubs.rsc.orgfulir.irb.hr
Šmidlehner, Tamara ; Karačić, Zrinka ; Tomić, Sanja ; Schmuck, Carsten ; Piantanida, Ivo | Fluorescent cyanine-guanidiniocarbonyl-pyrrole conjugate with pH-dependent DNA/RNA recognition and DPP III fluorescent labelling and inhibition properties // Monatshefte für Chemie, 149 (2018), 7; 1307-1313. doi: 10.1007/s00706-018-2192-0
doilink.springer.comfulir.irb.hr
Sabljić, Igor ; Tomin, Marko ; Matovina, Mihaela ; Sučec, Iva ; Tomašić Paić, Ana ; Tomić, Antonija ; Abramić, Marija ; Tomić, Sanja | The first dipeptidyl peptidase III from a thermophile: Structural basis for thermal stability and reduced activity // PLoS One, 13 (2018), 2; e0192488, 25. doi: 10.1371/journal.pone.0192488
doijournals.plos.orgdoi.orgfulir.irb.hrfulir.irb.hr
Hromić-Jahjefendić, Altijana ; Jajčanin Jozić, Nina ; Kazazić, Saša ; Grabar Branilović, Marina ; Karačić, Zrinka ; Schrittwieser, Jörg H. ; Das, Krishna Mohan Padmanabha ; Tomin, Marko ; Oberer, Monika ; Gruber, Karl et al. | A novel Porphyromonas gingivalis enzyme: An atypical dipeptidyl peptidase III with an ARM repeat domain // PLoS One, 12 (2017), 11; e0188915, 27. doi: 10.1371/journal.pone.0188915
doijournals.plos.orgfulir.irb.hr
Tomin, Marko ; Tomić, Sanja | Dynamic properties of dipeptidyl peptidase III from Bacteroides thetaiotaomicron and the structural basis for its substrate specificity – a computational study // Molecular biosystems, 13 (2017), 2407-2417. doi: 10.1039/c7mb00310b
doipubs.rsc.org
Matovina, Mihaela ; Agić, Dejan ; Abramić, Marija ; Matić, Sara ; Karačić, Zrinka ; Tomić, Sanja | New findings about human dipeptidyl peptidase III based on mutations found in cancer // RSC Advances, 7 (2017), 58; 36326-36334. doi: 10.1039/C7RA02642K
doipubs.rsc.orgdoi.orgfulir.irb.hr
Gundić, Mario ; Tomić, Antonija ; Wade, Rebecca C. ; Matovina, Mihaela ; Karačić, Zrinka ; Kazazić, Saša ; Tomić, Sanja | Human DPP III – Keap1 Interactions : A Combined Experimental And Computational study // Croatica chemica acta, 89 (2016), 2; 217-228. doi: 10.5562/cca2916
doihrcak.srce.hr
Agić, Dejan ; Brkić, Hrvoje ; Tomić, Sanja ; Karačić, Zrinka ; Špoljarević, Marija ; Lisjak, Miroslav ; Bešlo, Drago ; Abramić, Marija | Validation of flavonoids as potential dipeptidyl peptidase III inhibitors: experimental and computational approach // Chemical biology & drug design, 89 (2017), 4; 619-627. doi: 10.1111/cbdd.12887
doionlinelibrary.wiley.comdoi.org
Tomić, Antonija ; Kovačević, Borislav ; Tomić, Sanja | Concerted nitrogen inversion and hydrogen bonding to Glu451 are responsible for protein-controlled suppression of the reverse reaction in the human DPP III // PCCP. Physical chemistry chemical physics, 18 (2016), 39; 27245-27256. doi: 10.1039/C6CP04580D
doipubs.rsc.org
Matić, Josipa ; Šupljika, Filip ; Tir, Nora ; Piotrowski, Patryciusz ; Schmuck, Carsten ; Abramić, Marija ; Piantanida, Ivo ; Tomić, Sanja | Guanidiniocarbonyl-pyrrole -aryl conjugates as inhibitors of human dipeptidyl peptidase III: combined experimental and computational study // RSC Advances, 6 (2016), 83044-83052. doi: 10.1039/c6ra16966j
doipubs.rsc.orgpubs.rsc.org
Crnolatac, Ivo ; Rogan, Iva ; Majić, Boris ; Tomić, Sanja ; Deligeorgiev, Todor ; Horvat, Gordan ; Makuc, Damjan ; Plavec, Janez ; Pescitelli, Gennaro ; Piantanida, Ivo | Small molecule probes finely differentiate between various ds- and ss-DNA and RNA by fluorescence, CD and NMR response // Analytica chimica acta, 940 (2016), 128-135. doi: 10.1016/j.aca.2016.08.021
doiwww.journals.elsevier.com
Smolko, Ana ; Šupljika, Filip ; Martinčić, Jelena ; Jajčanin-Jozić, Nina ; Grabar- Branilović, Marina ; Tomić, Sanja ; Ludwig- Müller, Jutta ; Piantanida, Ivo ; Salopek- Sondi, Branka | The role of conserved Cys residues in Brassica rapa auxin amidohydrolase: the Cys139 is crucial for the enzyme activity and the Cys320 regulates enzyme stability // PCCP. Physical chemistry chemical physics, 18 (2016), 13; 8890-8900. doi: 10.1039/c5cp06301a
doipubs.rsc.org
Rastija, Vesna ; Agić, Dejan ; Tomić, Sanja ; Nikolić, Sonja ; Hranjec, Marijana ; Karminski-Zamola, Grace ; Abramić, Marija | Synthesis, QSAR, and molecular dynamics simulation of amidino-substituted benzimidazoles as dipeptidyl peptidase III inhibitors // Acta chimica slovenica, 62 (2015), 4; 867-878. doi: 10.17344/acsi.2015.1605
doifulir.irb.hrfulir.irb.hrjournals.matheo.sidx.doi.org
Tomić, Antonija ; Berynskyy, Mykhaylo ; Wade, Rebecca C. ; Tomić, Sanja | Molecular simulations reveal that the long range fluctuations of human DPP III change upon ligand binding // Molecular biosystems, 11 (2015), 3068-3080. doi: 10.1039/c5mb00465a
doipubs.rsc.org
Gershberg, Jana ; Radić Stojković, Marijana ; Škugor, Marko ; Tomić, Sanja ; Rehm, Thomas H. ; Rehm, Stephanie ; Saha-Möller, Chantu R. ; Piantanida, Ivo ; Würthner, Frank | Sensing of Double-Stranded DNA/RNA Secondary Structures by Water Soluble Homochiral Perylene Bisimide Dyes // Chemistry : a European journal, 21 (2015), 21; 7886-7895. doi: 10.1002/chem.201500184
doionlinelibrary.wiley.com
González-García, Jorge ; Tomić, Sanja ; Lopera, Alberto ; Guijarro, Lluís ; Piantanida, Ivo ; García-España, Enrique | Aryl-bis-(scorpiand)-aza receptors differentiate between nucleotide monophosphates by combination of aromatic, hydrogen bond and electrostatic interactions // Organic & biomolecular chemistry, 13 (2015), 1732-1740. doi: 10.1039/c4ob02084g
doipubs.rsc.orgpubs.rsc.org
Grabar Branilović, Marina ; Tomić, Sanja | Computational study of the structural plasticity and the ligand binding affinity of the IRES subdomain IIa // Molecular biosystems, 10 (2014), 12; 3272-3279. doi: 10.1039/c4mb00469h
doipubs.rsc.org
Maršavelski, Aleksandra ; Lesjak, Sonja ; Močibob, Marko ; Weygand-Đurašević, Ivana ; Tomić, Sanja | A single amino acid substitution affects the substrate specificity of the seryl-tRNA synthetase homologue // Molecular biosystems, 10 (2014), 12; 3207-3216. doi: 10.1039/C4MB00416G
doipubs.rsc.org
Tomić, Antonija ; Tomić, Sanja | Hunting the human DPP III active conformation : combined thermodynamic and QM/MM calculations // Dalton transactions, 43 (2014), 15503-15514. doi: 10.1039/C4DT02003K
doipubs.rsc.org
Brkić, Hrvoje ; Kovačević, Borislav ; Tomić, Sanja | Human 3-hydroxyanthranilate 3, 4-dioxygenase (3HAO) dynamics and reaction, a multilevel computational study // Molecular biosystems, 11 (2015), 3; 898-907. doi: 10.1039/C4MB00668B
doipubs.rsc.orgpubs.rsc.org
Bertoša, Branimir ; Mikleušević, Goran ; Wielgus-Kutrowska, Beata ; Narczyk, Marta ; Hajnić, Matea ; Leščić Ašler, Ivana ; Tomić, Sanja ; Luić, Marija ; Bzowska, Agnieszka | Homooligomerization is needed for stability: a molecular modelling and solution study of E. coli purine nucleoside phosphorylase // The FEBS journal, 281 (2014), 7; 1860-1871. doi: 10.1111/febs.12746
doi
Kojić-Prodić, Biserka ; Danilović, Žarko ; Puntarec, Vito ; Tomić, Sanja ; Šušković, Božidar | Crystal and Molecular Structure of (4S, 5S)-6-Ammonium-6-deoxy-3-O-ascorbate // Croatica chemica acta, 64 (1991), 3; 311-317
hrcak.srce.hrhrcak.srce.hr
Kušec, Rajko ; Nikolić, V. ; Tomić, Sanja ; Hančević, Janko ; Davila, S. ; Valković, Vladivoj | Trace elements in periosteal callus and cortical bone after plating for fracture // Periodicum biologorum. Supplement, 92 (1990), 3; 325-327
Tomić, Sanja ; Lakatoš, Josip ; Valković, Vladivoj | Analysis of Trace Elements in Hair of Pregnant Women Using XRF Spectroscopy // X-Ray Spectrometry, 18 (1989), 2; 73-76. doi: 10.1002/xrs.1300180208
doionlinelibrary.wiley.com
Orlić, Ivica ; Tomić, Sanja ; Makjanić, Jagoda ; Jakšić, Milko ; Valković, Vladivoj | A Modified Approach to Quantitative XRF Analysis of Thick Targets // X-Ray Spectrometry, 16 (1987), 3; 125-130. doi: 10.1002/xrs.1300160307
doionlinelibrary.wiley.com
Nagj, Marina ; Makjanić, Jagoda ; Orlić, Ivica ; Tomić, Sanja ; Valković, Vladivoj | Determination of Uranium in Sea Water by X-Ray Fluorescence Spectroscopy // Journal of radioanalytical and nuclear chemistry, 97 (1986), 2; 373-380. doi: 10.1007/BF02035683
doilink.springer.com
Tomić, Sanja ; Valković, Vladivoj ; Budnar, M. ; Starc, V. ; Šmit, Žiga | Comparison of XRF and PIXE on aerosol samples // Nuclear instruments & methods in physics research. Section B, Beam interactions with materials and atoms, 24-25 (1987), 2; 609-612. doi: 10.1016/S0168-583X(87)80207-0
doiwww.sciencedirect.com
Tomić, Sanja ; Krmpotić-Nemanić, Jelena ; Valković, Vladivoj | X-ray fluorescence of (irregularly shaped) bone sample materials // Nuclear instruments & methods in physics research. Section B, Beam interactions with materials and atoms, 18 (1986), 1-6; 71-76. doi: 10.1016/S0168-583X(86)80014-3
doiwww.sciencedirect.com
Tomić, Sanja ; Nagj, Marina ; Raos, D. | Determination of Heavy Metal in Drinking Water by X-Ray Spectroscopy // International journal of environmental analytical chemistry, 23 (1985), 87-94. doi: 10.1080/03067318508076437
doiwww.tandfonline.comdoi.org
Jajčanin Jozić, Nina ; Tomić, Sanja ; Abramić, Marija | Importance of the three basic residues in the vicinity of the zinc-binding motives for the activity of the yeast dipeptidyl peptidase III // Journal of biochemistry, 155 (2014), 1; 43-50. doi: 10.1093/jb/mvt093
doijb.oxfordjournals.orgjb.oxfordjournals.org
Aleksić, Maja ; Bertoša, Branimir ; Nhili, Raja ; Depauw, Sabine ; Martin-Kleiner, Irena ; David-Cordonnier, Marie-Helene ; Tomić, Sanja ; Kralj, Marijeta ; Karminski-Zamola, Grace | Anilides and quinolones with nitrogen-bearing substituents from benzothiophene- and thienothiophene- series: synthesis, photochemical synthesis, cytostatic evaluation, 3D-derived QSAR analysis and DNA-binding properties // European journal of medicinal chemistry, 71 (2014), 267-281. doi: 10.1016/j.ejmech.2013.11.010
doiwww.sciencedirect.comac.els-cdn.com
Grabar Branilović, Marina ; Tomić, Sanja ; Tumir, Lidija-Marija ; Piantanida, Ivo | The bis-phenanthridinium system flexibility and position of covalently bound uracil finely tunes the interaction with polynucleotides // Molecular biosystems, 9 (2013), 8; 2051-2062. doi: 10.1039/C3MB25578F
doipubs.rsc.org
Radić Stojković, Marijana ; Škugor, Marko ; Tomić, Sanja ; Grabar, Marina ; Smrečki, Vilko ; Dudek, Łukasz ; Grolik, Jarosław ; Eilmes, Julita ; Piantanida, Ivo | Dibenzotetraaza[14]annulene – adenine conjugate recognizes complementary poly dT among ss-DNA / ss-RNA sequences // Organic & biomolecular chemistry, 11 (2013), 24; 4077-4085. doi: 10.1039/c3ob40519b
doipubs.rsc.org
Tus, Alan ; Rakipović, Alen ; Peretin, Goran ; Tomić, Sanja ; Šikić, Mile | BioMe : biologically relevant metals // Nucleic acids research, 40 (2012), W352-W357. doi: 10.1093/nar/gks514
doinar.oxfordjournals.orgnar.oxfordjournals.org
Hrvoje, Brkić ; Daniela, Buongiorno ; Michael, Ramek ; Grit, Straganz ; Sanja, Tomić | Dke1 – Structure, Dynamics and Function, A Theoretical and Experimental Study Elucidated the Role of the Binding Site Shape and the H-Bonding Network in Catalysis // Journal of biological inorganic chemistry, 17 (2012), 5; 801-815. doi: 10.1007/s00775-012-0898-8
doird.springer.com
Tomić, Antonija ; Gonzalez, Miguel ; Tomić, Sanja | The large scale conformational change of the human DPP III – substrate prefers the "closed" form // Journal of chemical information and modeling, 52 (2012), 6; 1583-1594. doi: 10.1021/ci300141k
doipubs.acs.org
Aleksić, Maja ; Bertoša, Branimir ; Nhili, Raja ; Uzelac, Lidija ; Jarak, Ivana ; Depauw, Sabine ; David-Cordonnier, Marie-Hélène ; Kralj, Marijeta ; Tomić, Sanja ; Karminski-Zamola, Grace | Novel Substituted Benzothiophene and Thienothiophene Carboxanilides and Quinolones: Synthesis, Photochemical Synthesis, DNA-Binding Properties, Antitumor Evaluation and 3D-Derived QSAR Analysis // Journal of medicinal chemistry, 55 (2012), 11; 5044-5060. doi: 10.1021/jm300505h
doipubs.acs.org
Tumir, Lidija-Marija ; Crnolatac, Ivo ; Deligeorgiev, Todor ; Vasilev, Aleksey ; Kaloyanova, Stefka ; Grabar Branilović, Marina ; Tomić, Sanja ; Piantanida, Ivo | Kinetic differentiation between homo- and alternating AT-DNA by sterically restricted phosphonium dyes // Chemistry : a European journal, 18 (2012), 13; 3859-3864. doi: 10.1002/chem.201102968
doionlinelibrary.wiley.com
Šikić, Kresimir ; Tomić, Sanja ; Carugo, Oliviero | Systematic comparison of crystal and NMR protein structures deposited in the protein data bank // The Open biochemistry journal, 4 (2010), 83-95. doi: 10.2174/1874091X01004010083
doibenthamopen.com
Špoljarić, Jasminka ; Tomić, Antonija ; Vukelić, Bojana ; Salopek-Sondi, Branka ; Agić, Dejan ; Tomić, Sanja ; Abramić, Marija | Human Dipeptidyl Peptidase III : the Role of Asn406 in Ligand Binding and Hydrolysis // Croatica chemica acta, 84 (2011), 2; 259-268. doi: 10.5562/cca1808
doihrcak.srce.hr
Šimunović, Mijo ; Žagrović, Bojan ; Tomić, Sanja | Mechanism and thermodynamics of ligand binding to auxin amidohydrolase // Journal of molecular recognition, 24 (2011), 5; 854-861. doi: 10.1002/jmr.1128
doionlinelibrary.wiley.com
Tomić, Antonija ; Abramić, Marija ; Špoljarić, Jasminka ; Agić, Dejan ; Smith, David M. ; Tomić, Sanja | Human Dipeptidyl Peptidase III: Insights into Ligand Binding from a Combined Experimental and Computational Approach // Journal of molecular recognition, 24 (2011), 5; 804-814. doi: 10.1002/jmr.1115
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Groger, Kathrin ; Baretić, Domagoj ; Piantanida, Ivo ; Marjanović, Marko ; Kralj, Marijeta ; Grabar, Marina ; Tomić, Sanja ; Schmuck, Carsten | Guanidiniocarbonyl-pyrrole-aryl conjugates as nucleic acid sensors: switch of binding mode and spectroscopic responses by introducing additional binding sites into the linker // Organic & biomolecular chemistry, 9 (2011), 1; 198-209. doi: 10.1039/C0OB00103A
doipubs.rsc.org
Bertoša, Branimir ; Aleksić, Maja ; Karminski-Zamola, Grace ; Tomić, Sanja | QSAR analysis of antitumor active amides and quinolones from thiophene series // International journal of pharmaceutics, 394 (2010), 1-2; 106-114. doi: 10.1016/j.ijpharm.2010.05.014
doiwww.sciencedirect.comdoi.org
Burja, Bojan ; Čimbora-Zovko, Tamara ; Tomić, Sanja ; Jelušić, Tihana ; Kočevar, Marijan ; Polanc, Slovenko ; Osmak, Maja | Pyrazolone-fused combretastatins and their precursors : synthesis, cytotoxicity, antitubulin activity and molecular modeling studies // Bioorganic & medicinal chemistry, 18 (2010), 7; 2375-2387. doi: 10.1016/j.bmc.2010.03.006
doiwww.sciencedirect.comdoi.org
Tumir, Lidija-Marija ; Grabar, Marina ; Tomić, Sanja ; Piantanida, Ivo | The interactions of bis-phenanthridinium – nucleobase conjugates with nucleotides: adenine conjugate recognizes UMP in aqueous medium // Tetrahedron, 66 (2010), 13; 2501-2513. doi: 10.1016/j.tet.2010.01.063
doiwww.sciencedirect.comdoi.orgfulir.irb.hr
Savić, Bojana ; Tomić, Sanja ; Magnus, Volker ; Gruden, Kristina ; Barle, Katja ; Grenković, Renata ; Ludwig-Müller, Jutta ; Salopek-Sondi, Branka | Auxin amidohydrolases from Brassica rapa cleave the alanine conjugate of indolepropionic acid as a preferable substrate: a biochemical and modeling approach // Plant and cell physiology, 50 (2009), 9; 1587-1599. doi: 10.1093/pcp/pcp101
doiacademic.oup.comdoi.org
Banjanac, Mihailo ; Tatić, Iva ; Ivezić, Zrinka ; Tomić, Sanja ; Dumić, Jerka | Pyrimido-Pyrimidines : A Novel Class of Dihydrofolate Reductase Inhibitors // Food technology and biotechnology, 47 (2009), 3; 236-245
www.ftb.com.hr
Ćaleta, Irena ; Kralj, Marijeta ; Marjanović, Marko ; Bertoša, Branimir ; Tomić, Sanja ; Pavlović, Gordana ; Pavelić, Krešimir ; Karminski-Zamola, Grace | Novel Cyano- and Amidino- Benzothiazole Derivatives: Synthesis, Antitumor Evaluation, X-ray and QSAR Analysis // Journal of medicinal chemistry, 52 (2009), 6; 1744-1756. doi: 10.1021/jm801566q
doipubs.acs.orgdoi.org
Šikić, Mile ; Tomić, Sanja ; Vlahoviček, Kristian | Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests // Plos computational biology, 5 (2009), 1; e1000278-1-e1000278-9. doi: 10.1371/journal.pcbi.1000278
doijournals.plos.orgfulir.irb.hr
Vujasinović, Ines ; Mlinarić-Majerski, Kata ; Bertoša, Branimir ; Tomić, Sanja | Influence of the Rigid Spacer to Macrocyclization of Poly(thialactones): Synthesis and Computational Analysis // Journal of physical organic chemistry, 22 (2009), 5; 431-437. doi: 10.1002/poc.1479
doionlinelibrary.wiley.comdoi.org
Mihel, Josip ; Šikić, Mile ; Tomić, Sanja ; Jeren Branko ; Vlahoviček, Kristian | PSAIA - Protein Structure and Interaction Analyzer // BMC structural biology, 8 (2008), 21, 11. doi: 10.1186/1472-6807-8-21
doibmcstructbiol.biomedcentral.comdoi.orgpubmed.ncbi.nlm.nih.govfulir.irb.hr
Dokmanić, Ivan ; Šikić, Mile ; Tomić, Sanja | Metals in proteins: correlation between the metal- ion type, coordination number and the amino-acid residues involved in the coordination // Acta crystallographica. Section D, Biological crystallography, 64 (2008), 3; 257-263. doi: 10.1107/S090744490706595X
doiscripts.iucr.org
Luić, Marija ; Štefanić, Zoran ; Ceilinger, Igor ; Hodošček, Milan ; Janežić, Dušanka ; Lenac, Tihana ; Leščić Ašler, Ivana ; Šepac, Dragan ; Tomić, Sanja | Combined X-Ray Diffraction and QM/MM Study of the Burkholderia cepacia Lipase-Catalyzed Secondary Alcohol Esterification // The journal of physical chemistry. B, Condensed matter, materials, surfaces, interfaces & biophysical, 112 (2008), 16; 4876-4883. doi: 10.1021/jp077717u
doipubs.acs.org
Hernandez-Folgado, Laura ; Schmuck, Carsten ; Tomić, Sanja ; Piantanida, Ivo | A novel pyrene-guanidiniocarbonyl-pyrrole cation efficiently differentiates between ds-DNA and ds-RNA by two independent, sensitive spectroscopic methods // Bioorganic & medicinal chemistry letters, 18 (2008), 2977-2981. doi: 10.1016/j.bmcl.2008.03.060
doiwww.elsevier.com
Bertoša, Branimir ; Kojić-Prodić, Biserka ; Wade, Rebecca ; Tomić, Sanja | Mechanism of Auxin Interaction with Auxin Binding Protein (ABP1): A Molecular Dynamics Simulation Study // Biophysical journal, 94 (2008), 1; 27-37. doi: 10.1529/biophysj.107.109025
doiwww.sciencedirect.comdoi.org
Tomić, Sanja ; Bertoša, Branimir ; Wang, Ting ; Wade, Rebecca | COMBINE Analysis of the Specificity of Binding of Ras Proteins to their Effectors // Proteins, 67 (2007), 2; 435-447-x
Tomašić, Ana ; Bertoša, Branimir ; Tomić, Sanja ; Šoškić, Milan ; Magnus, Volker | Binding behavior of amino acid conjugates of indole-3-acetic acid to immobilized human serum albumin // Journal of Chromatography A, 1154 (2007), 1-2; 240-249-x
www.sciencedirect.com
Kojić-Prodić, Biserka ; Nigović, Biljana ; Tomić, Sanja ; Ilić, Nebojša ; Magnus, Volker ; Giba, Zlatko ; Konjević, Radomir ; Duax, William L. | Structural studies on 5-(n-alkyl)-substituted derivatives of the plant hormone indole-3-acetic acid // Acta crystallographica. Section B, Structural science, 47 (1991), 1010-1019. doi: 10.1107/S0108768191008996
doiscripts.iucr.org
Tumir, Lidija Marija ; Piantanida, Ivo ; Žinić, Mladen ; Juranović Cindrić, Iva ; Meić, Zlatko ; Kralj, Marijeta ; Tomić, Sanja | Synthesis of phenanthridinium bis-nucleobase conjugates, interactions with poly U, nucleotides and in vitro antitumor activity of mono- and bis-nucleobase conjugates // European journal of medicinal chemistry, 41 (2006), 10; 1153-1166-x
www.sciencedirect.com
Tomić, Sanja ; Kojić-Prodić, Biserka ; Magnus, Volker ; Laćan, Goran ; Duddeck, H. ; Hiegemann, M. | Synthesis and conformational analysis of plant hormone (auxin) related compound, 2-(indol-3-yl)ethyl β -D-galactopyranoside and its 2, 3, 4, 6-tetra-O-acetyl derivative // Carbohydrate research, 279 (1995), 1-19. doi: 10.1016/0008-6215(95)00245-6
doiwww.sciencedirect.com
Ramek, Michael ; Tomić, Sanja ; Kojić-Prodić, Biserka | Systematic Ab Initio SCF Conformational Analysis of Indol-3-ylacetic Acid Phytohormone (Auxin): Comparison with Experiment and Molecular Mechanics Calculations // International journal of quantum chemistry, 56 (1995), 22; 75-81. doi: 10.1002/qua.560560708
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Tomić, Sanja ; van Eijck, B. P ; Kojić-Prodić, B ; Kroon, J. ; Magnus, Volker ; Nigović, Biljana ; Ilić, Nebojša ; Duddeck, Helmut ; Hiegemann, Monika | Synthesis and Conformational Analysis of Plant Hormone (auxin) Related Compounds, 2-(indol-3-yl)ethyl and 2-(phenyl)ethyl β -D-xylopyranosides and their 2, 3, 4-tri-O-acetyl Derivatives // Carbohydrate research, 270 (1995), 1; 11-32. doi: 10.1016/0008-6215(95)00037-T
doiwww.sciencedirect.com
Tomić, Sanja ; van Duijneveldt, F. B. ; Kroon-Batenburg, L. M. ; Kojić-Prodić, Biserka | Molecular Mechanics and SCF MO Conformational Analysis of Indol-3-ylacetic Acid, Phytohormone // Croatica chemica acta, 68 (1995), 1; 205-214
hrcak.srce.hrhrcak.srce.hr
Tomić, Sanja ; van Eijck, B. P. ; Kroon, J. ; Kojić-Prodić, Biserka ; Laćan, Goran ; Magnus, Volker ; Duddeck, Helmut ; Hiegemann, Monika | Synthesis and Conformational Analysis of 2-(indol-3-yl) ethyl α -L-arabinopyranoside and its 2, 3, 4-tri-O-acetyl derivative // Carbohydrate research, 259 (1994), 2; 175-190
www.sciencedirect.com
Keglević, Dina ; Kojić-Prodić, Biserka ; Banić, Zrinka ; Tomić, Sanja ; Puntarec, Vitomir | Synthesis and Conformational Analysis of Muramic Acid δ - Lactam Structures and Their -O-(2-Acetamido-2-deoxy- α -D-glucopyranosyl) Derivatives, Characteristic of Bacterial Spore Peptidoglycan // Carbohydrate research, 241 (1993), 131-152. doi: 10.1016/0008-6215(93)80101-J
doiwww.sciencedirect.com
Kojić-Prodić, Biserka ; Nigović, Biljana ; Puntarec, Vitomir ; Tomić, Sanja ; Magnus, Volker | Structural comparison of Biologically Active and Inactive Conjugates of alpha-Amino Acids and the Plant Growth Hormone (Auxin) Indole-3-acetic Acid // Acta crystallographica. Section B, Structural science, 49 (1993), 367-374
Tomić, Sanja ; Ramek, Michael | Quantum Mechanical Study of Burkholderia cepacia Lipase Enantioselectivity // Journal of molecular catalysis. B, Enzymatic, 38 (2006), 139-147-x
Tumir, Lidija-Marija ; Piantanida, Ivo ; Juranović, Iva ; Meić, Zlatko ; Tomić, Sanja ; Žinić, Mladen | Recognition of homo-polynucleotides containing adenine by phenanthridinium bis-uracil conjugate in aqueous media. // Chemical communications, - (2005), 20; 2561-2563-x
Wang, Ting ; Tomić, Sanja ; Gabdoulline, Razif ; Wade, Rebecca | How Optimal Are the Binding Energetics of Barnase and Barstar? // Biophysical journal, 87 (2004), 1618-1630-x
Ramek, Michael ; Tomić, Sanja | Ab initio Hartree-Fock Investigation of 2-Methylindole-3-acetic Acid // Croatica chemica acta, 77 (2004), 1-2; 371-376-x
Tomić, Sanja ; Bertoša, Branimir ; Kojić-Prodić, Biserka ; Kolosvary, Istvan | Stereoselectivity of Burkholderia cepacia lipase towards secondary alcohols: molecular modelling and 3D QSAR approach // Tetrahedron: asymmetry, 15 (2004), 1163-1172
Bertoša, Branimir ; Kojić-Prodić, Biserka ; Ramek Michael ; Piperaki, Stavroula, Tsantili-Kakoulidou, Anna ; Wade, Rebecca ; Tomić, Sanja | A new approach to predict the biological activity of molecules based on similarity of their interaction fields and the logP and logD values: application to auxins // Journal of chemical information and computer sciences, 43 (2003), 1532-1541-x
Antolić, Snježana ; Dolušić, Eduard ; Kožić, Erika Katačić ; Kojić-Prodić, Biserka ; Magnus, Volker ; Ramek, Michael ; Tomić, Sanja | Auxin activity and molecular structure of 2-alkylindole-3-acetic acids // Plant growth regulation, 39 (2003), 3; 235-252-x
Tomić, Sanja ; Kojić-Prodić, Biserka | A Quantitative Model for Predicting Enzyme Enantioselectivity: Application to Burkholderia cepacia lipase and 3-(Aryloxy)-1, 2-propanediol Derivatives // Journal of molecular graphics & modelling, 21 (2002), 3; 241-252-x
Ramek, Michael ; Tomić, Sanja | Ab initio Hartree-Fock investigation of 1-H- pyrrolo[3, 2-b]pyridine-3-yl acetic acid // Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy, 57 (2001), 1951-1957
Tomić, Sanja ; Wade, Rebecca C. | COMBINE analysis of nuclear receptor-DNA binding specifity: Comparison of two datasets // Croatica chemica acta, 74 (2001), 295-314-x
Tomić, Sanja ; Dobovičnik, Vladimir ; Šunjić, Vitomir ; Kojić-Prodić, Biserka | Enantioselectivity of the Pseudomonas cepacia lipase towards 2-methyl-3-(or 4)-arylalkanols: an approach based on stereoelectronic theory and the molecular modeling // Croatica chemica acta, 74 (2001), 343-357-x
Luić, Marija ; Tomić, Sanja ; Leščić, Ivana ; Ljubović, Edina ; Šepac, Dragan ; Šunjić, Vitomir ; Vitale, Ljubinka ; Saenger, Wolfram ; Kojić-Prodić, Biserka | Complex of Burkholderia cepacia lipase with transition state analogue of 1-phenoxy-2-acetoxybutane, Biocatalytic, structural and modelling study. // European journal of biochemistry, 268 (2001), 14; 3964-3973-x
Tomić, Sanja ; Nillson, Lennart ; Wade, Rebecca | Nuclear receptor-DNA binding specificity : a combine and Free-Wilson QSAR ananlysis // Journal of medicinal chemistry, 43 (2000), 9; 1780-1792-x
Ramek, Michael ; Tomić, Sanja | Quantum chemical conformational analysis of the auxin phytohormone 4-methyl-3-indole acetic acid // International journal of quantum chemistry, 75 (1999), 6; 1003-1008-x
Kojić-Prodić, Biserka ; Magnus, Volker ; Antolić, Snježana ; Tomić, Sanja ; Salopek-Sondi, Branka | Structure/activity correlations for auxins // Acta botanica Croatica, 58 (1999), 27-37
Tomić, Sanja ; Gabdoulline, Razif R. ; Kojić-Prodić, Biserka ; Wade, Rebecca C. | Classification of auxin related compounds based on similarity of their interaction fields: extension to a new set of compounds. // Internet journal of chemistry, 1 (1998), 26-x
Ramek, Michael ; Tomić, Sanja | RHF conformational analysis of the auxin phytohormones n-ethyl-indole-3-acetic acid (n=4, 5, 6). // International journal of quantum chemistry, 70 (1998), 6; 1169-1175-x
Ramek, Michael ; Tomić, Sanja | Ab Initio RHF investigation of mono- and dihalogenated indole-3-acetic acid (IAA) phytohormones. // Journal of molecular structure. Theochem, 454 (1998), 167-173-x
Tomić, Sanja ; Gabdoulline, Razif R. ; Kojić-Prodić, Biserka ; Wade, Rebecca C. | Classification of auxin plant hormones by interaction property similarity indices. // Journal of computer-aided molecular design, 12 (1998), 63-79-x
Tomić, Sanja ; Ramek, Michael ; Kojić-Prodić, Biserka | Combined Ab Initio SCF and molecular mechanics studies of propionic and isobutyric acids and their indole derivatives related to the phytohormone auxin (Indole-3-acetic acid). // Croatica chemica acta, 71 (1998), 511-525-x
Antolić, Snježana ; Kojić-Prodić, Biserka ; Magnus, Volker ; Salopek, Branka ; Tomić, Sanja | Structure-activity correlations for ring-alkylated derivatives of indole-3-acetic acid // Plant physiology, 114 (1997), 3; 158-158-x
Antolić, Snježana ; Kojić-Prodić, Biserka ; Tomić, Sanja ; Nigović, Biljana ; Magnus, Volker ; Cohen, Jerry D. | Structural studies on monofluorinated derivatives of the phytohormone indole-3-acetic acid (auxin) // Acta crystallographica. Section B, Structural science, 52 (1996), 4; 651-661. doi: 10.1107/S0108768195016302
doiscripts.iucr.org
Ramek, Michael ; Tomić, Sanja ; Kojić-Prodić, Biserka | Comparative ab initio SCF conformational study of phytohormones (auxins) 4-chloro-indole-3-acetic acid and indole-3-acetic acid // International journal of quantum chemistry, 60 (1996), 8; 1727-1733. doi: 10.1002/(SICI)1097-461X(1996)60:8<1727::AID-QUA1>3.0.CO;2-%23
doionlinelibrary.wiley.com

Pregledni rad (znanstveni)

Ljubović, Edina ; Tomić, Sanja ; Kojić-Prodić, Biserka ; Šunjić, Vitomir | Current Approach to Study of Biocatalytic Reactions: Experiment and Molecular Modeling of Lipase Catalysed Reactions // Kemija u industriji : časopis kemičara i tehnologa Hrvatske, 50 (2001), 3; 139-156

Prikaz, osvrt, kritika

Grabar Branilović, Marina ; Maršavelski, Aleksandra ; Tomić, Antonija ; Tomić, Sanja | Nobelova nagrada za kemiju za 2013. godinu // Kemija u industriji : časopis kemičara i tehnologa Hrvatske, 62 (2013), 11-12; 468-471
fulir.irb.hrhrcak.srce.hr

Stručni rad

Čogelja Čajo, Gordana ; Osrečki, Vesna ; Tomić, Siniša | Utjecaj lijekova na okoliš // Kemija u industriji : časopis kemičara i tehnologa Hrvatske, 59 (2010), 7-8; 351-354
hrcak.srce.hr
Tomić, Siniša ; Filipović Sučić, Anita ; Ilić Martinac, Adrijana | Reguliranje lijekova u Hrvatskoj - doprinos javnom zdravstvu // Kemija u industriji : časopis kemičara i tehnologa Hrvatske, 59 (2010), 7-8; 343-349
hrcak.srce.hr

Publications - conference proceedings

Sažetak izlaganja sa skupa

Tomić, Antonija; Tomić, Sanja | Understanding Binding and Hydrolysis of Neuropeptides in the Active Site of Human Dipeptidyl Peptidase III // Computational Chemistry Day 2022 : book of abstracts. | Zagreb: Prirodoslovno-matematički fakultet Sveučilišta u Zagrebu, 2022. str. 19-19
drive.google.com
Matić, Antonia ; Karačić, Zrinka ; Tomić, Antonija ; Brkić, Hrvoje ; Tomić Sanja | Dipeptidyl peptidase iii inhibition tests by metal dications // Book of Abstracts of the Congress of the Croatian Society of Biochemistry and Molecular Biology HDBMB22: From Science to Knowledge. | Zagreb: Hrvatsko društvo za biokemiju i molekularnu biologiju (HDBMB), 2022. str. 105-105
congress2022.hdbmb.hr
Kekez, Ivana ; Matić, Sara ; Tomić, Sanja ; Matković-Čalogović, Dubravka | Binding of peptide mimicking the ETGE loop of dipeptidyl peptidase III to the Kelch domain of Keap1 // The twenty-eighth Croatian-Slovenian Crystallographic Meeting : Book of Abstracts. | Zagreb, 2022. str. 8-8
cscm28.hazu.hr
Matovina, Mihaela ; Tomašić Paić, Ana ; Barbarić, Lea ; Brkić, Hrvoje ; Tomić, Sanja ; Marinović, Ivana | Study of the interaction of dipeptidyl peptidase 3 and SH2 domain-containing protein 3C // Book of Abstracts of the Congress of the Croatian Society of Biochemistry and Molecular Biology HDBMB22: From Science to Knowledge. | Zagreb: Croatian Society of Biochemistry and Molecular, 2022. str. 107-107
congress2022.hdbmb.hr
Tomić, Sanja ; Karačić, Zrinka ; Tomić, Antonija ; Brkljačić, Lidija ; Šupljika, Filip | Neuropeptides - substrates of dipeptidyl peptidase III // From Science to Knowledge. | Zagreb: Hrvatsko Društvo za Biotehnologiju, 2022. str. 151-151
congress2022.hdbmb.hr
Tomić, Antonija ; Horvat, Gordan ; Ramek, Michael ; Agić, Dejan ; Brkić, Hrvoje ; Tomić, Sanja | Development of new zinc ion parameters suitable for classical MD simulations of zinc metallo-peptidases // Computational Chemistry Day 2019 :Book of abstracts. | Zagreb: Prirodoslovno-matematički fakultet Sveučilišta u Zagrebu, 2019. str. 3-3
ccd19.pharma.hr
Tomić, Antonija ; Karačić, Zrinka ; Šupljika, Filip ; Tomić, Sanja | Computational modelling an aid to understand binding and hydrolysis of neuropeptides in the active site of human DPP III // Book of abstracts of the 1st Central and Eastern European Conference on Physical Chemistry and Materials Science (CEEC-PCMS1). | 2022. str. 196-196
www.ceec-physchem.org
Tomić, Antonija ; Tomić, Sanja | Computational study of the human DPP III catalyzed peptide hydrolysis - difference between „good“ and „slow“ substrate // Math/Chem/Comp 2022 and 33rd MC2 Conference : Book of Abstracts. | Zagreb: Hrvatsko kemijsko društvo, 2022. str. 24-24
mcc.hkd.hr
Zonjić, Iva ; Tumir, Lidija-Marija ; Šupljika, Filip ; Crnolatac, Ivo ; Racane, livio ; Tomić, Sanja ; Radić Stojković, Marijana | Recognition of DNA:RNA hybrid and triplex structures by a series of benzothiazole ligands. | 2021. str. 1-1
Zonjić, Iva ; Tumir, Lidija Marija ; Šupljika, Filip ; Crnolatac, Ivo ; Racané, Livio ; Tomić, Sanja ; Radić Stojković Marijana | Recognition of DNA:RNA hybrid and triplex structure by a series of benzothiazole ligands // 27th Croatian Meeting of Chemists and Chemical Engineers. | Zagreb: Hrvatsko kemijsko društvo, 2021. str. 44-44
Zonjić, Iva ; Tumir, Lidija Marija ; Šupljika, Filip ; Crnolatac, Ivo ; Racane, Livio ; Tomić, Sanja ; Radić Stojković, Marijana | Interactions of benzothiazole ligands with DNA:RNA hybrids and triplex structures // IV. SIMPOZIJ SUPRAMOLEKULSKE KEMIJE Supramolecular Chemistry 2021. | Zagreb, 2021. str. 1-1
Tomić, Antonija ; Tomić, Sanja | Understanding the human DPP iii substrate specificity : QM/MM and MD calculations // Math/Chem/Comp 2021 : 32nd MC2 Conference : book of abstracts. | Zagreb: Hrvatsko kemijsko društvo, 2021. str. 42-42
mcc.hkd.hr
Agić, Dejan ; Šubarić, Domagoj ; Karnaš, Maja ; Komar, Mario ; Karačić, Zrinka ; Tomić, Sanja ; Bešlo, Drago ; Rastija, Vesna ; Molnar, Maja | Interactions of human dipeptidyl petidase III with coumarinyl Schiff bases // 27th Croatian Meeting of Chemists and Chemical Engineers and 5th Symposium Vladimir Prelog : Book of Abstracts. | Zagreb: Hrvatsko kemijsko društvo, 2021. str. 157-157
27hskiki.hkd.hr
Matić, Antonia ; Karačić, Zrinka ; Tomić, Antonija ; Brkić, Hrvoje ; Tomić, Sanja | Ispitivanja inhibicije dipeptidil peptidaze III metalnim dikationima // Knjiga sažetaka - 18. Ružičkini dani: Danas znanost - Sutra industrija. | Zagreb : Osijek: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI) ; Prehrambeno tehnološki fakultet Sveučilišta Josipa Jurja Strossmayera u Osijeku, 2020. str. 78-78
www.hdki.hr
Tomić, Sanja ; Karačić, Zrinka ; Brkljačić, Lidija ; Tomašić Paić, Ana ; Ćehić, Mirsada ; Matovina, Mihaela | Uloga dipeptidil peptidaze III u regulaciji boli // Knjiga sažetaka - 18. Ružičkini dani: Danas znanost - Sutra industrija. | Zagreb : Osijek: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI) ; Prehrambeno tehnološki fakultet Sveučilišta Josipa Jurja Strossmayera u Osijeku, 2020. str. 134-134
www.hdki.hr
Agić, Dejan ; Karnaš, Maja ; Šubarić, Domagoj ; Komar, Mario ; Karačić, Zrinka ; Tomić, Sanja ; Molnar, Maja | Inactivation of human dipeptidyl peptidase III by quinazolinone derivatives // 18th International conference Ružička Days “Today Science – Tomorrow Industry” : Book of Abstracts / Jukić, Ante (ur.). | Zagreb, Osijek: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI) ; Prehrambeno tehnološki fakultet Osijek, 2020. str. 124-124
www.hdki.hr
Ćehić, Mirsada ; Suć, Josipa ; Jerić, Ivanka ; Piantanida, Ivo ; Tomić, Sanja ; Schmuck, Carsten | Experimental study of new guanidiniocarbonyl-pyrrole-aryl conjugates as potential inhibitors of human dipeptidyl peptidase III // 4th Young Medicinal Chemist Symposium (EFMC-YMCS 2017) : Book of Abstracts. | Beč: EFMC-YMCS, 2017. str. 141-141
www.ldorganisation.com
Tomin, Marko ; Tomić, Sanja | Human DPP III - Keap1 interactions // Computational Chemistry Day 2019 Book of Abstracts. | Zagreb: Prirodoslovno-matematički fakultet Sveučilišta u Zagrebu, 2019. str. 24-24
ccd19.pharma.hr
Bistrović, Andrea ; Stolić, Ivana ; Krstulović, Luka ; Taylor, C. Martin ; Kelly, M. John ; Tomić, Sanja ; Bajić, Miroslav ; Raić-Malić, Silvana | Novel symmetric bis-benzimidazoles: synthesis, DNA/RNA binding and antitrypanosomal activity // Knjiga sažetaka. | Zagreb: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI), 2019. str. 145-145
Tomin, Marko ; Tomić, Sanja | Human DPP III - Keap1 interactions // The 3rd COST-sponsored ARBRE-MOBIEU plenary meeting Book of Abstracts. | Zagreb: Institut Ruđer Bošković ; Hrvatsko biofizičko društvo, 2019. str. 134-135
arbre-mobieu.eu
Tomin, Marko ; Tomić, Sanja | Dipeptidyl peptidase III from a mesophilic and thermophilic bacterium – similarities and differences // The 14th Greta Pifat Mrzljak International School of Biophysics, ABC of Physics of Life: Book of abstracts. | Zagreb: Institut Ruđer Bošković ; Hrvatsko biofizičko društvo, 2018. str. 122-122
Tomić, Antonija ; Ramek, Michael ; Tomić, Sanja | Development of new parameters for the Zn2+ ion for the specific environment of the DPP III enzyme catalytic site // Computational Chemistry Day Book of abstracts. | Zagreb: Prirodoslovno-matematički fakultet Sveučilišta u Zagrebu, 2018. str. 15-15
Tomin, Marko ; Tomić, Sanja | Mehanizam hidrolize peptidne veze na modelnom sustavu DPP III iz Bacteroides thetaiotaomicron // Simpozij studenata doktorskih studija PMF-a : knjiga sažetaka. | Zagreb: Prirodoslovno-matematički fakultet Sveučilišta u Zagrebu, 2018. str. 36-36
www.pmf.unizg.hr
Matić, Sara ; Karačić, Zrinka ; Gruber, Karl ; Tomić, Sanja | Combination of SAXS and molecular modeling in structure-function characterization of the plant DPP III orthologue // 7th Visegrad Symposium on Structural Systems Biology : Program & Abstracts. | Nové Hrady, 2017. str. P6-P6
nh.cas.cz
Tomić, Sanja ; Tomić, Antonija ; Gundić, Mario | Influence of ligands and protein binding to structure and flexybility of human dipeptidyl peptidase III // Conference proceedings of ICBMB 2016, International Conference on Biochemistry and Molecular Biology. | 2016. str. 9-9
biochem.conference-site.com
Tomin, Marko ; Tomić, Sanja | Computational study of dipeptidyl peptidase III from thermophile Caldithrix abyssi // Math/Chem/Comp 2017, 29th MC2 Conference : Book of Abstracts. | 2017. str. 16-16
www.pmf.unizg.hr
Maršavelski, Aleksandra ; Tomić, Sanja | Substrate selectivity of atypical methanogenic-type Seryl-tRNA synthetases-computational approach // The 11th Greta Pifat-Mrzljak International School of Biophysics. | 2012
Tomin, Marko ; Tomić, Sanja ; Sabljić, Igor | Bacteroides thetaiotaomicron dipeptidyl peptidase III complexes with synthetic substrates // ECS3 Book of Abstracts. | Zagreb: Hrvatska udruga kristalografa, 2016. str. 14-14
ecs3.ecanews.org
Tomić, Sanja | Understanding substrate recognition and function of human dipeptidyl peptidase III // Regional Biophysics Conference (RBC2016) - Book of Abstracts / EUT Edizioni Università di Trieste (ur.). | Trst: EUT Edizioni Università di Trieste, 2016. str. 9.-9
www.openstarts.units.it
Tomin, Marko ; Tomić, Sanja | Conformational study of Bacteroides thetaiotaomicron dipeptidyl peptidase III // Conference proceedings, ICBMB 2016. | 2016. str. 23-23
biochem.conference-site.com
Tomin, Marko ; Tomić, Sanja ; Sabljić, Igor | Conformational study of Bacteroides thetaiotaomicron dipeptidyl peptidase III // Simpozij studenata doktorskih studija PMF : Knjiga sažetaka. | Zagreb, 2016. str. 40-40
drive.google.com
Bertoša, Branimir ; Kazizić, Saša ; Mikleušević, Goran ; Štefanić, Zoran ; Narczyk, Marta ; Wielgus- Kutrowska, Beata ; Hajnić, Matea ; Leščić Ašler, Ivana ; Tomić, Sanja ; Tarnowski, Krzysztof et al. | Role of subunit-subunit interactions in the catalysis conducted by hexameric purine nucleoside phosphorylase. | 2015. str. 1-1
Grabar Branilović, Marina; Tomić, Sanja | Computational study of the IRES subdomain IIa structural plasticity and the ligand binding affinity // Chemistry towards Biology 7th Central European Conference - Book of Abstracts. | Katovice, 2014. str. P10-P10
Tomić, Antonija ; Tomić, Sanja | The recent findings on the zinc ion coordination and ligand binding in the human DPP III active site – implication on the chemical reaction mechanism // XXIII. hrvatski skup kemičara i kemijskih inženjera, knjiga sažetaka. | Zagreb: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI), 2013. str. 177-177
Tomić, Sanja ; Tomić, Antonija ; Brkić, Hrvoje | Elucidation of metal ion-binding sites in proteins // 6th Central Europe Conference - Abstracts of scientific contributions. | Trst: Universita degli studi di Trieste, 2013. str. oc15-oc15
Tomić, Antonija ; Tomić, Sanja | Molecular Mechanics - Poisson Boltzmann Surface Area calculations using AMBER program package - application to the human dipeptidyl petidase III // Computational Electrostatics for Biological Applications - Book of Abstract. | 2013. str. 39-39
Tomić, Sanja ; Tomić, Antonija ; Gonzalez, Miguel | Molecular dynamics based studies on human DPP III revealed determinants for its broad substrate selectivity. | 2012
Tomić, Sanja ; Grabar, Marina ; Piantanida, Ivo | Guanidiniocarbonyl-pyrrole-aryl conjugates as nucleic acid sensors: switch of binding mode and spectroscopic response's // Book of Abstracts Regional Biophysical Conference 2012. | Beograd: Društvo biofizičara Srbije, 2012. str. 13-13
Tomić, Antonija ; Tomić, Sanja | Further study of the zinc coordination in the active site of the human DPP III - ONIOM calculations // Book of abstracts, 11th Greta Pifat-Mrzljak International School of Biophysics, Biomolecular complexes and assemblies. | Zagreb: Institut Ruđer Bošković i Hrvatsko biofizičko društvo, 2012. str. 104-104
www.irb.hr
Tomić, Antonija ; Tomić, Sanja | QM/MM study of the zinc coordination in the active site of the human DPP III // Knjiga sažetaka - IX. Susret mladih kemijskih inženjera. | Zagreb: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI), 2012. str. 173-173
Tomić, Sanja ; Brkić, Hrvoje ; Ramek, Michael ; Buongiorno, Daniele ; Straganz, Grit | Influence of The Hydrophobic Residues on The Dke1 Activity. | 2011. str. 1-1
Grabar, Marina ; Tomić, Sanja ; Tumir Marija, Lidija ; Piantanida, Ivo | Molecular modeling of new permanently charged phenanthridinium-nucleobase conjugates in complexes with double stranded polynucleotides // Ninth Triennial Congress of the World Association ot Theoretical and Computational Chemists - Book of Abstracts. | Santiago de Compostela, 2011. str. PII 017-x
Tomić, Antonija ; Tomić, Sanja | MD simulations showed large conformational changes of the human free DPP III // Book of Abstracts - The Conference on Molecular Simulations in Biosystems and Material Science. | Konstanz, 2011. str. 72-72
cms.uni-konstanz.de
Bertoša, Branimir ; Tomić, Sanja ; Aleksić, Maja ; Karminski-Zamola, Grace | Investigation of anticancer activity of heterocyclic amides and quinolones using 3D-QSAR analysis // Ninth Triennial Congress of the World Association ot Theoretical and Computational Chemists. | Santiago de Compostela, 2011. str. PII 016-x
Tomić, Antonija ; Tomić, Sanja | Human dipeptidyl-peptidases (h.DPP III), sampling the substrate binding site - computational analysis // Book of Abstracts of the "Fourth Humboldt Conference on Computational Chemistry". | Sofija, 2010. str. 63.-63.
Tomić, Antonija ; Tomić, Sanja | Natural vs. synthetic peptides binding to human dipeptidyl-peptidases (DPP III), computational insight // Book of Abstracts of the "Australia-Croatia Workshop on Antimicrobial Peptides and Summer School in Biophysics PhD Programme: AMP 2010". | Split: Faculty of Science, University of Split, 2010. str. 49.-49.
Burja, Bojan ; Čimbora-Zovko, Tamara ; Tomić, Sanja ; Jelušić, Tihana ; Kočevar, Marjan ; Polanc, Slovenko ; Osmak, Maja | Pyrazolone-fused combretastatins and their precursors: synthesis, cytotoxicity, antitubulin activity and molecular modeling studies // Book od Abstract HDIR-1 From Bench to Clinic. | Zagreb: Hrvatsko društvo za istraživanje raka (HDIR), 2010. str. 73-73
Bertoša, Branimir ; Tomić, Sanja ; Aleksić, Maja ; Karminski-Zamola, Grace | QSAR analysis and proposal of new heterocyclic compounds with potential antitumor activity // The 5th Central European Conference - Chemistry towards Biology. | Zagreb: Institut Ruđer Bošković, 2010. str. 66-66
Grabar, Marina ; Tomić, Sanja ; Tumir, Lidija-Marija ; Piantanida, Ivo ; Crnolatac, Ivo | Molecular modelling of phosphonium cyanine dyes in complex with DNA // The 5th Central European Conference - Chemistry towards Biology / Abramić, Marija ; Maksić, Zvonimir ; Salopek-Sondi, Branka et al. (ur.). | Zagreb: Institut Ruđer Bošković, 2010. str. 85-85
Brkić, Hrvoje ; Grit, Straganz ; Tomić, Sanja ; Ramek, Michael | Molecular Modeling of Acetylacetone Dioxygenase from Acinobacter Jonsoii. | 2009
Grabar, Marina ; Tomić, Sanja ; Tumir, Lidija-Marija ; Piantanida, Ivo ; Crnolatac, Ivo ; Deligeorgiev, Todor ; Vasilev, Alexey ; Kaloyanova, Stefka | Interaction of phosphonium cyanine dyes with DNA // Abstracts of the Fourth Humboldt Conference on Computational Chemistry. | Sofija, 2010. str. 62-x
Bertoša, Branimir ; Aleksić, Maja ; Karminski-Zamola, Grace ; Tomić, Sanja | QSAR analysis of heterocyclic amides and quinolones with potential antitumor activity // Math/Chem/Comp 2010, Program & book of abstracts. | Zagreb: Institut Ruđer Bošković, 2010. str. 7-7
Grabar, Marina ; Tumir, Lidija-Marija ; Piantanida, Ivo ; Tomić, Sanja | Computational approach to specificity of intercalators toward nucleotides // Book of Abstracts of the Tenth international summer school on biophysics - supramolecular structure and function. | Rovinj, 2009. str. 105-x
Cvetešić, Nevena; Dulić, Morana; Perona, John J.; Gruić-Sovulj, Ita | Mechanism of hydrolytic proofreading in amino acid selection for protein biosynthesis // The 3rd Adriatic Meeting on Computational Solutions in the Life Science Book of Abstracts. | Zagreb: Center for Computational Solutions in the Life Science, IRB, 2009. str. 50-50
Grabar, Marina ; Tumir, Lidija-Marija ; Piantanida, Ivo ; Tomić, Sanja | Computational and spectroscopic studies of intercalators and their interaction with nucleotides // Book of Abstracts of The third Adriatic Meeting on computational Solutions in the Life Sciences. | Zagreb: Institut Ruđer Bošković, 2009. str. 56-x
Grabar, Marina ; Tumir, Lidija-Marija ; Piantanida, Ivo ; Tomić, Sanja | Bisphenanthridinium-nucleobase conjugates – molecular modelling and spectroscopic approach // Book of Abstracts of the EMBO Young Scientists Forum. | Zagreb, 2009
Grabar, Marina ; Tumir, Lidija-Marija ; Piantanida, Ivo ; Tomić, Sanja | Molecular modelling of bisphenanthridinium- nucleobase conjugates // Book of Abstracts of the MATH/CHEM/COMP - The Dubrovnik International Course on the Interfaces among Mathematics, Chemistry and Computer Sciences. | Zagreb: Institut Ruđer Bošković, 2008. str. 20-x
Tomić, Antonija ; Abramić, Marija ; Smith, David ; Tomić, Sanja | Molecular dynamics simulations of ligands binding into the active site of human dipeptidyl-peptidases (DPPIII) // Book of Abstracts of the EMBO Young Scientists Forum. | 2009. str. 53-53
bioinfo.hr
Grabar, Marina ; Tumir, Lidija-Marija ; Piantanida, Ivo ; Tomić, Sanja | Molecular modelling of bisphenanthridinium- nucleobase conjugates // Book of Abstracts of the International Conference and Biophysics Summmer School From Solid State to Biophysics IV. | École polytechnique fédérale de Lausanne (EPFL), 2008
Tomić, Antonija ; Abramić, Marija ; Smith, David ; Tomić, Sanja | Computational and experimental approach to the study of ligands binding into the active site of the human dipeptidyl-peptidases (DPPIII) // Book of Abstracts of the "The 3rd Adriatic Meeting On Computational Solutions in the Life Sciences". | Zagreb: Centre for Computational Solutions in the Life Sciences, Ruđer Bošković Institute, 2009. str. 77-77
www.compsols.irb.hr
Savić, Bojana ; Tomić, Sanja ; Magnus, Volker ; Gruden, Kristina ; Barle, Katja ; Grenković, Renata ; Salopek-Sondi, Branka ; Jutta Ludwig-Müller | Auxin amidohydrolases from Brassica rapa cleave conjugates of indole propionic and indole butyric acid as preferable substrates: A biochemical and modeling approach // ACPD 2009, Auxins and Cytokinins in Plant Development, Book of Abstracts. | Prag, 2009. str. 22-22
Šikić, Krešimir ; Tomić, Sanja ; Jeren, Branko | The protein structure flexibility // Proceedings of 23rd International Course on the Interfaces among Mathematics, Chemistry & Computer Sciences. | Zagreb, 2008
Tomić, Sanja ; Bertoša, Branimir | Study of protein specificity and selectivity by computational methods // Third Humboldt Conference on Computational Chemistry. | Sofija: Avangard Prima, 2006. str. 26-26
Tomić, Sanja | Force field based methods for computational study of macromolecules // Hottest Topics in Protein Research : Book of abstracts. | Zagreb, 2008. str. 7-8
Tomić, Sanja ; Bertoša, Branimir ; Wade, C. Rebecca | Non covalent interactions in protein complexes // Humboldt Conference On Noncovalent Interactions. | Vršac: AvH, 2007. str. 12-12
Tomić, Sanja | Combined 3D QSAR and QM/MM Study of the Burkholderia cepacia Lipase Enantioselectivity // Protein Design and Evolution for Biocatalysis, Book of Abstracts. | 2008
Savić, Bojana ; Tomić, Sanja ; Magnus, Volker ; Salopek-Sondi, Branka | BrILL2, auksin amidohidrolaza iz kineskog kupusa (Brassica rapa L.) // Zbornik sažetaka. | Zagreb: Institut Ruđer Bošković, 2008. str. 74-74
Kojić-Prodić, Biserka ; Nigović, Biljana ; Tomić, Sanja ; Ilić, Nebojša ; Magnus, Volker ; Giba, Zlatko ; Konjević, Radomir | Structural studies on 5-(n-alkyl)-substituted derivatives of the plant hormone, indol-3-ylacetic acid // Abstracts, 14th International Conference on Plant Growth Substances (IPGSA 1991). | Amsterdam: Landbouwuniversitet Wageningen, 1991. str. 68-68
Salopek-Sondi, Branka ; Savić, Bojana ; Tomić, Sanja ; Magnus, Volker | Insight into structure and function of the plant enzyme, auxin amido-hydrolase // Book of abstracts of the HDBMB 2008. | Osijek: Hrvatsko Društvo za Biotehnologiju, 2008. str. 130-130
Vujasinović, Ines ; Bertoša, Branimir ; Tomić, Sanja ; Mlinarić-Majerski, Kata | Influence of the rigid spacer to macrocyclization of poly(thialactones): Synthesis and computational analysis // IUPAC Conference Santiago de Compostela. | Santiago de Compostela, 2008
Tomić, Sanja ; Ceilinger, Igor ; Janežić, Dušanka ; Hodošček, Milan | Towards understanding enentio-selective enzyme catalysed chemical transformation of pro-drugs // Abstracts book. | Atena: University of Athens, 2008. str. 35-35
Tomić, Sanja ; Ceilinger, Igor ; Hodošček, Milan ; Janežić, Dušanka | QM/MM Study of the Burkholderia cepacia Lipase Catalyzed Secondary Alcohol Esterification // Book of Abstracts - The Conference on Molecular Simulations in Biosystems and Material Science. | Konstanz: Universitaet Konstanz, 2008. str. 92-92
Tomić, Sanja ; Wade, Rebecca ; Wang, Ting ; Bertoša, Branimir ; Gabdoulline, Razif | The protein-protein interactions- molecular modelling study // 6th Central European Symposium on Theoretical Chemistry - Book of Abstracts. | Graz: TU-Graz, 2007. str. L12-L12
Tomić, Sanja ; Ivan, Dokmanić | Divalent metal cations in proteins: abundance, coordination, function // Book of Abstracts: 16th CROATIAN-SLOVENIAN CRYSTALLOGRAPHIC MEETING. | Zagreb: Hrvatska akademija znanosti i umjetnosti (HAZU), 2007. str. 54-x
Tomić, Sanja | Proučavanje međudjelovanja proteina korištenjem računala // Knjiga sažetaka 5. znanstvenog sastanka Hrvatskog fizikalnog društva. | Zagreb, 2007. str. 56-x
Bertoša, Branimir ; Wade, Rebecca ; Kojić-Prodić, Biserka ; Tomić, Sanja | Computational simulations of ABP1 and its interactions with auxin-related molecules // The 2th Opatija Meeting on Computational Solutions in the Life Sciences. | Zagreb: Institut Ruđer Bošković, 2007. str. 30-30
Bertoša, Branimir ; Tomić, Sanja ; Kojić-Prodić, Biserka | Investigation of Auxin Binding to ABP1 by Computational Methods // Supramolecular Structure and Function. | Zagreb, 2006. str. 99-x
Dokmanić, Ivan ; Šikić, Mile ; Tomić, Sanja | Correlating protein surface shape and hydrophobicity using spherical harmonical expansions // Book of abstracts, The 2nd Opatija Meeting on Computational Solutions in the Life Sciences. | Zagreb: Institut Ruđer Bošković, 2007. str. 69-69
Šikić, Krešimir ; Tomić, Sanja ; Branko, Jeren | New methods of finding flexibility in proteins // The 2th Opatija Meeting on Computational Solutions in the Life Sciences. | Zagreb: Institut Ruđer Bošković, 2007. str. 86-x
Antolić, Snježana ; Kojić-Prodić, Biserka ; Tomić, Sanja ; Magnus, Volker ; Cohen, Jerry D. | Structure-Activity Correlations for Ring-Fluorinated Indole-3-Acetic Acids // Program-Abstracts. 15^th International Conference on Plant Growth Substances. | Minneapolis (MN): International Plant Growth Substances Association, 1995. str. 245-245-x
Ceilinger, I. ; Tomić, Sanja ; Hodošček, M. ; Janežič, D. | QM/MM Study of the Burkholderia cepacia Lipase Catalysed Secondary Alcohol Esterification // Through Science to Stability. Proceedings of the 1^st South Eastern European Workshop on Practical Approaches to Computational Biology. | Zagreb: Institut Ruđer Bošković, 2005. str. 43-43-x
Tomić, Sanja ; Ramek, Michael | Study of Lipase Enantioselectivity // IXX. hrvatski skup kemičara i kemijskih inženjera. Knjiga sažetaka. | Zagreb: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI), 2005. str. 89-89
Bertoša, Branimir ; Tomić, Sanja ; Babić, Darko | Molecular Dynamics Simulations of Auxin Binding Protein1 // Through science to stability : 1st South Eastern European workshop on practical approaches to computational biology. | 2005. str. 60-60-x
Bertoša, Branimir ; Tomić, Sanja | INVESTIGATION OF PROTEIN-PROTEIN INTERACTIONS USING COMBINE ANALYSIS // XIX. hrvatski skup kemičara i kemijskih inžinjera, Knjiga sažetaka. | Zagreb, 2005. str. 217-x
Kojić-Prodić, Biserka ; Kovačić, Filip ; Wilhelm, Susanne ; Tomić, Sanja ; Jager, Karl-Erich | Bioinformatics Approach to Characterisation of SGNH Hydrolase // XX Congress of International Union of Crystallography, Book of Abstracts, Acta Cryst A61, Supplement. | Firenza : München: International Union of Crystallography, 2005. str. C42-x
journals.iucr.org
Tomić, Sanja | Theoretical study of enzyme specificity and selectivity // Regional Biophysics Meeting 2005: Book of abstracts. | Slovenian Biophysical Society, 2005. str. 10-10-x
Tomić, Sanja | Rational Approach In Modifying Enzyme Specificitity // Devide & Conquere: Assembling Leads from Fragments- Disassembling Protein Complexes. | University of Marburg, 2005. str. 43-43-x
Bertoša, Branimir ; Tomić, Sanja ; Kojić-Prodić, Biserka | New classification procedure for biologically active compounds based on similarity of their molecular interactions and logP prediction // Zbornik sažetaka postera znanstvenih novaka izlaganih u inozemstvu 2002., 2003. i 2004. godine. | Zagreb, 2004. str. 15-16-x
Tomić, Sanja ; Bertoša, Branimir ; Kojić-Prodić, Biserka | Study of lipase stereoselectivity by computational methods // 2nd Central European Conference Chemistry towards Biology. | Graz: Universitaet Graz, 2004. str. 67-67-x
Tomić, Sanja | Changing enzyme specificity // BRIJUNI Conference (Matter under extreme conditions). | Zagreb: Institut Ruđer Bošković, 2004
Tomić, Sanja ; Bertoša, Branimir | Proučavanje specifičnosti enzima računskim metodama // Znanstvena konferencija promicanje ideja fizike. | Zagreb: Institut za fiziku, 2004. str. 19-19-x
Wang, Ting ; Tomić, Sanja ; Gabdoulline, Razif ; Wade, Rebecca | Comparative binding energy (combine) analysis of barnase-barstar inter facial mutants // MATH/CHEM/COMP/2003: Program and Book of Abstracts. | Zagreb: Institut Ruđer Bošković, 2003. str. 92-x
Bertoša, Branimir ; Kolossvary, Istvan ; Kojić-Prodić, Biserka ; Tomić, Sanja | Molecular modelling and 3D QSAR study on burkholderia cepacia catalysed resolution of diverse secondary alcohols. | Zagreb: Institut Ruđer Bošković, 2003. str. 9-9-x
Tomić, Sanja ; Bertoša, Branimir ; Kojić-Prodić, Biserka | Classification of auxin related compounds based on similarity of their molecular interactions fields and logP prediction // XVIII. hrvatski skup kemičara i kemijskih inžinjera, Sažetci, abstract. | Zagreb: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI), 2003. str. 134-134-x
Bertoša, Branimir ; Tomić, Sanja ; Kojić-Prodić, Biserka | New classification procedure for biologically active compounds based on similarity of their molecular interactions and logP prediction // Humboltd research conference on computational chemistry-book of abstracts. | Sofija, 2002. str. 72-72-x
Kojić-Prodić, Biserka ; Magnus, Volker ; Tomić, Sanja ; Antolić, Snježana ; Salopek-Sondi, Branka ; Dolušić, Eduard ; Bertoša, Branimir | Molecular recognition of the plant hormone auxin is still a puzzle // Abstracts, XIX Congress and General Assembly of the International Union of Crystallography [Acta Crystallographica A58 (Supplement)]. | Chester: International Union of Crystallography, 2002. str. C139-C139-x
Tomić, Sanja | Molecular modeling and 3D QSAR approach to molecular recognition // CC1MLIS Book of Abstracts. | Zagreb: Farmaceutsko-biokemijski fakultet Sveučilišta u Zagrebu, 2002. str. 112-x
Tomić, Sanja | Enantioselectivity of Burkholderia cepacia lipase towards primary and secondary alcohols: molecular modelling and 3D QSAR analysis // EURO QSAR 2002, Book of Abstracts. | Portsmouth: University of Portsmouth, 2002. str. Poster No 072-x
Bertoša, Branimir ; Tomić, Sanja ; Ramek, M. ; Wade, R. ; Kojić-Prodić, Biserka | New classification procedure for biologically active compounds based on similarity of their molecular interactions and logP prediction // First Central European Conference: "CHEMISTRY TOWARDS BIOLOGY". | Ljubljana, 2002. str. 134-134
Antolić, Snježana ; Dolušić, Eduard ; Bertoša, Branimir ; Kojić-Prodić, Biserka ; Magnus, Volker ; Salopek-Sondi, Branka ; Tomić, Sanja | Molecular recognition of auxins - a rational approach to plant growth regulation // Book of Abstracts, First Croatian Congress on Molecular Life Sciences (ISBN 953-6256-13-4). | Zagreb: Farmaceutsko-biokemijski fakultet Sveučilišta u Zagrebu, 2002. str. 84-84-x
Tomić, Sanja | Enantioselectivity of the Pseudomonas Cepacia Lipase Toward 3-(Ariloxy)-1,2-Propanediols // MATH/CHEM/COMP. | Zagreb: Institut Ruđer Bošković, 2001. str. 96-96-x
Tomić, Sanja ; Luić, Marija ; Kojić-Prodić, Biserka | Influence of water molecules in the crystal structure of Pseudomonas Cepacia Lipase on secondary alcohol binding modes scoring and on model for predicting enantioselectivity // Tenth Cro-Slo crystallographic Meeting, Book of Abstracts. | Zagreb: Sveučilište u Zagrebu, 2001. str. 27-27-x
Ramek, Michael ; Tomić, Sanja | Conformational Analysis of the Phytohormones x-Ethyl-3-Indole Acetic Acid (x = 4, 5, 6) // Conference proceeding. | St. Augustine (FL): University of Florida, 1998. str. 00-00-x
Ramek, Michael ; Tomić, Sanja | Ab Initio RHF Conformational Analysis of the Auxin Phytohormone 4-Methyl-3-Indole Acetic Acid // Conference proceeding. | St. Augustine (FL): University of Florida, 1999. str. 00-00-x
Ramek, Michael ; Tomić, Sanja | Theoretical Structure Investigations of 3-Indole Acetic Acid Derivatives // Conference proceeding. | Austin (TX): University of Austin, 2000. str. 00-00-x
Ramek, Michael ; Tomić, Sanja | Theoretical Structure Investigation of 2-Methyl-3-Indole Acetic Acid // Conference proceeding. | Austin (TX): University of Austin, 2002. str. 00-00-x
Abramić, Marija ; Kojić-Prodić, Biserka ; Leščić, Ivana ; Luić, Marija ; Ljubović, Edina ; Pigac, Jasenka ; Saenger, Wolfram ; Schroeder, Werner ; Šunjić, Vitomir ; Tomić, Sanja et al. | A contribution to understanding of enzymatic activity of bacterial lipases. // Workshop of Challenges in Crystallography of Macromolecular Assemblies. | Trst: Synchrotron Trieste, 2000. str. 24-24-x
Abramić, Marija ; Kojić-Prodić, Biserka ; Leščić, Ivana ; Luić, Marija ; Ljubović, Edina ; Pigac, Jasenka ; Saenger, Wolfram ; Schröder, Werner ; Šunjić, Vitomir ; Tomić, Sanja et al. | "Structure is function": A contribution to understanding enzymatic activity of bacterial lipases. // Kongres hrvatskih biokemičara i molekularnih biologa, HB 2000. Knjiga sažetaka.. | Zagreb: Farmaceutsko-biokemijski fakultet Sveučilišta u Zagrebu, 2000. str. 46-46-x
Tomić, Sanja ; Kojić-Prodić, Biserka ; Šunjić, Vitomir | Enantioselectivity of acylation by Pseudomonas cepacia lipase - COMBINE analysis // 13. Darmstaedter Molecular-Modelling Workshop. | Darmstadt: Technische Universitaet Darmstadt, 1999. str. 18-x
Tomić, Sanja ; Luić, Marija ; Šepac, Dragan ; Leščić, Ivana ; Ljubović, Edina ; Kojić-Prodić, Biserka ; Šunjić, Vitomir | Molecular modeling of the complex of 1-phenoxy-2- butanol with acetyl -pseudomonas cepacia lipase (PCL), and its p-transition state analog in comparison with the experimental results // Rational approaches to drug design: Proceedings of the 13th European Symposium on Quantitative Structure-Activity Relationships. | Düsseldorf: Prous Science, Barcelona, 2001. str. 69-73
Tomić, Sanja ; Wade, Rebecca | QSAR-COMBINE analysis of nuclear receptor-DNA binding // EUKO-CC3. | Budimpešta: Hungarian Chemical Society, 2000. str. 27-x
Tomić, Sanja ; Wade, Rebecca | QSAR-COMBINE Analysis of Nuclear Receptor-DNA Binding // DU 2000 NMR. | Dubrovnik: Inter-University Center, 2000. str. 46-46-x
Tomić, Sanja ; Ljubović, Edina ; Kojić-Prodić, Biserka ; Šunjić, Vitomir | Molecular Modeling of the Enantioselectivity of Pseudomonas Cepacia Lipase Towards Some Secondary and Primary Alcohols // DU 2000 NMR. | Dubrovnik: Inter-University Center, 2000. str. 45-45-x
Magnus, Volker ; Antolić, Snježana ; Balón, Manuel ; Kojić-Prodić, Biserka ; Tomić, Sanja ; Vikić-Topić, Dražen | The electronic structure of auxin molecules correlates with their biological activity // EMBO Workshop on Auxin. | Calcatoggio, 2000. str. 58-58-x
Kojić-Prodić, Biserka ; Antolić, Snježana ; Tomić, Sanja ; Magnus, Volker | Molecular recognition of the phytohormone auxin and related compounds // Collected Abstracts-XVII. congress and general assembly, International union of crystallography. | Seattle (WA): International Union of Crystallography, 1996. str. C417-C417-x
Kveder, Marina ; Tomić, Sanja ; Kidrič, Jurka ; Kojić-Prodić, Biserka ; Čudić, Mare ; Horvat, Jaroslav ; Horvat, Štefica | Comparative conformational analysis of 1-(6-deoxy-1,2:3,4-di-O-isopropylidene-alpha-D-galactos-6-yl) 2,5-piperazinedione based on experimental evidences and computer modelling // Book of Abstracts. | Zagreb: Hrvatsko biokemijsko društvo, 1996. str. 72-72-x

Stručni rad

Tomić, Sanja | Život modeliran vodom // Fizikalni aspekti vode. | Zagreb: Prirodoslovno-matematički fakultet Sveučilišta u Zagrebu, 2008. str. 50-57
www.hfd.hr
Tomić, Sanja | Razotkrivanje tajni (za život važnih) molekula // Fizika u temeljima suvremene znanosti i društva. Zbornik predavanja 21. ljetne škole mladih fizičara. | Zagreb: Hrvatsko fizikalno društvo, 2005. str. 41-46-x
Tomić, Sanja | Modelling - a connection between structure and activity // Znanstveni projekti i programi. | 2004
www.humboldt-club.hr

Izvorni znanstveni rad

Agić, Dejan; Bešlo, Drago; Lučić, Bono; Tomić, Sanja; Blagojević, Bojana; Popović, Boris M. | Computational study on the interactions of quercetin 3-O-rutinoside with human DPP III // Book of Proceedings, 2nd International Conference on Chemo and Bioinformatics / Marković, Zoran; Filipović, Nenad (ur.). | Kragujevac: University of Belgrade, 2023. str. 629-632. doi: 10.46793/iccbi23.629a
doidoi.ub.kg.ac.rs
Tomić, Sanja ; Brkić, Hrvoje ; Grabar Branilović, Marina ; Tomić, Antonija ; Branimir, Bertoša ; Mile, Šikić | Proteini i nukleinske kiseline u vremenu i prostoru // Bioinformatics and biological physics: proceedings of the scientific meeting. | Zagreb: Hrvatska akademija znanosti i umjetnosti (HAZU), 2013. str. 149-157
Šikić, Krešimir ; Tomić, Sanja, Jeren, Branko | Identifying protein flexibility by NMA // Proceedings of the 2008 International Conference on Bioinformatics & Computational Biology. | 2008. str. 927-933
Šikić, Krešimir ; Tomić, Sanja ; Jeren, Branko | The protein secondary structure flexibility // Proceedings of the 2008 International Conference on Bioinformatics & Computational Biology. | 2008. str. 918-926

Ostalo

Tomić, Sanja ; Abramić, Marija ; Brkić, Hrvoje ; Tomić, Antonija | Sprega kristalografije i modeliranja u proučavanju bioloških makromolekula // Kristalografija u Hrvatskoj. | Zagreb: Hrvatska akademija znanosti i umjetnosti (HAZU), 2013. str. 129-137

Publications - Conference journals

Sažetak izlaganja sa skupa

Tomić, Sanja ; Kovačević, Borislav ; Tomić, Antonija ; Matovina, Mihaela ; Karačić, Zrinka ; Matić, Sara ; Abramić, Marija ; Agić, Dejan | Understanding h.DPP III mechanism – an aid in rationalization of the mutants (in)activity // European biophysics journal, 2017. str. S179-S179. doi: 10.1007/s00249-017-1222-x
doilink.springer.comlink.springer.com
Tomić, Sanja ; Kazazić, Saša ; Abramić, Marija ; Tomin, Marko ; Agić, Dejan ; Karačić, Zrinka ; Grabar-Branilović, Marina | H/D exchange and MD simulation study of dipeptidyl peptidase III intrinsic dynamics and ligand binding // European biophysics journal, 2017. str. S179-S179. doi: 10.1007/s00249-017-1222-x
doilink.springer.comlink.springer.com
Tomić, Sanja ; Tomić, Antonija | Ligand binding to the flexible metaloenzymes: protein dynamics and the active enzyme conformation // European biophysics journal, 44, Suppl. 1, 2015. str. 243-243. doi: 10.1007/s00249-015-1045-6
doilink.springer.com
Tomin, Marko ; Tomić, Sanja ; Sabljić, Igor | Conformational study of Bacteroides thetaiotaomicron dipeptidyl peptidase III // Acta crystallographica. Section A, Foundations and advances, 2015. str. 209-209. doi: 10.1107/S2053273315096850
doiecm29.ecanews.org
Grabar Branilović, Marina ; Smolko, Ana ; Šupljika, Filip ; Salopek-Sondi, Branka ; Piantanida, Ivo ; Tomić, Sanja | The active site structure of manganese-containing Brassica rapa auxin-amidohydrolase BrILL2 // Acta crystallographica. Section A, Foundations and advances, 2015. str. 210-210. doi: 10.1107/S2053273315096849
doi
Grabar Branilović, Marina ; Smolko, Ana ; Šupljika, Filip ; Salopek-Sondi, Branka ; Piantanida, Ivo ; Tomić, Sanja | Brassica rapa auxin-amidohydrolase: the Mn2+ binding affinities and the active site structure // European biophysics journal, 2015. str. 166-166
Tomić, Sanja ; Brkić, Hrvoje ; Straganz, Grit ; Buongiorno, daniela | Non-heme iron dependent enzymes – understanding transport of iron cation in acetylacetone dioxygenase from Acinetobacter johnsoii // European biophysics journal, 2013. str. S184-S184
Savić, Bojana ; Ludwig-Müller, Jutta ; Tomić, Sanja ; Magnus, Volker ; Salopek-Sondi, Branka | Characterization of the Brassica rapa auxin amido-hydrolase, BrILL2 // Physiologia plantarum, 2008. str. P01-065-P01-065

Publications - Conference unpublished

Neobjavljeni prilog sa skupa

Kekez, Ivana; Matić, Sara; Matovina, Mihaela; Tomić, Sanja; Matković-Čalogović, Dubravka | Crystallization of the Keap1-DPP III complex // Hot Topics in Contemporary Crystallography 5 - HTCC5 | Dubrovnik, Hrvatska, 16.04.2023-21.04.2023
Karačić, Zrinka ; Šupljika, Filip ; Tomašić Paić, Ana ; Brkljačić, Lidija ; Tomić, Sanja | Role of dipeptidyl peptidase III in pain regulation through cleavage of neuropeptides // 27th Croatian Meeting of Chemists and Chemical Engineers (27HSKIKI) and 5th Symposium Vladimir Prelog | Veli Lošinj, Hrvatska, 05.10.2021-08.10.2021
27hskiki.hkd.hr
Tomin, Marko ; Tomić, Sanja ; Sabljić, Igor | Bacteroides thetaiotaomicron dipeptidyl peptidase III complexes with synthetic substrates // Thrid DPP III Minisymposium | Graz, Austrija, 10.02.2017-10.02.2017
www.irb.hr
Matić, Sara; Matovina, Mihaela; Tomić, Sanja | Exploring the effect of mutations on interactions between Keap1 and DPP III by MD simulations // EMBO Workshop: Integrating genomics and biophysics to comprehend functional genetic variation | Torino, Italija, 08.09.2017-10.09.2017
Brkić, Hrvoje ; Straganz, Grit ; Buongirno, Daniela ; Ramek, Michael ; Tomić, Sanja | Diketone cleaving dioxygenase - theoretical study // 5th Central European Conference "Chemistry Towards Biology" | Primošten, Hrvatska, 08.09.2010-11.09.2010
Tomić, Sanja | Modeliranje bioloških molekula i njihovih kompleksa // Bioinformatika IRB - 2004 | Zagreb, Hrvatska, 10.12.2004-10.12.2004

Publications - Graded papers

Doktorski rad

Ćehić, Mirsada | Eksperimentalno i računalno istraživanje novih konjugata gvanidina s različitim fluoroforima kao liganada humane dipeptidil-peptidaze III / Tomić, Sanja ; Piantanida, Ivo (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2019
dr.nsk.hr
Tomić, Antonija | Primjena računalnih pristupa različitih stupnjeva složenosti u svrhu razumijevanja strukture, dinamike i aktivnosti ljudske dipeptidil-peptidaze III / Tomić, Sanja (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2015
repozitorij.pmf.unizg.hr
Grabar Branilović, Marina | Eksperimentalno utemeljeno modeliranje interakcija nukleinskih kiselina i malih molekula / Tomić, Sanja (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2014
fulir.irb.hrrepozitorij.pmf.unizg.hr
Brkić, Hrvoje | Proučavanje o željezu ovisnih dioksigenaza računalnim metodama / Tomić, Sanja (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2014
Bertoša, Branimir | Modeliranje auksinskih molekula i njihove interakcije s veznim proteinom - ABP 1 / Tomić, Sanja (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2007
Šikić, Krešimir | Algoritmi za utvrđivanje fleksibilnosti proteina na temelju konformacije i fizikalnih svojstava proteina / Jeren, Branko (mentor); Tomić, Sanja (neposredni voditelj) . | Zagreb, Fakultet elektrotehnike i računarstva, 2008

Diplomski rad (sveučilišni)

Hanić, Maja | Interdisciplinarno istraživanje mutanata R620C, R623W i R623L ljudske dipeptidil-peptidaze III / Matovina, Mihaela ; Tomić, Sanja (mentor); Matić, Sara (neposredni voditelj) . | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2020
zir.nsk.hr
Čavka, Ivana | Računalne simulacije kompleksa ljudske dipeptidil-peptidaze III s angiotenzinom-(1-7) i njegovim stabilnim analogom / Tomić, Sanja (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2018
urn.nsk.hr
Tir, Nora | Simulacije molekulske dinamike kompleksa ljudske dipeptidil-peptidaze III s inhibitorima / Tomić, Sanja (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2016
repozitorij.pmf.unizg.hr
Šimunović, Mijo | Thermodynamics of ligand binding to auxin amidohydrolase / Cvitaš, Tomislav (mentor); Tomić, Sanja (neposredni voditelj) . | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2010
Ceilinger, Igor | Modeliranje enzimske esterifikacije sekundarnog alkohola korištenjem QM/MM pristupa / Tomić, Sanja (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2006

Other Publications

Ostalo

Šikić, Krešimir ; Jeren, Branko ; Tomić, Sanja | THE PROTEIN SECONDARY STRUCTURE FLEXIBILITY // MATH/CHEM/COMP 2008 - Book of Abstracts, 2008

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