Ph.D.: 1997,  Chemistry, Theoretical and physical chemistry, Faculty of Science, University of Zagreb, Croatia

M.Sc.: 1994, Physics, Molecular biophysics, Faculty of Science, University of Zagreb, Croatia

B.Sc.: 1989, Electronics, Faculty of Electrical Engineering and Computing, University of Zagreb, Croatia

Secondary School: 1983, Gymnasium, Gradačac, Bosnia and Herzegovina

  Development and application of improved chemoinformatics methods in the biosciences, CRO-GER project (DAAD) (2021-2022), project leader from the Croatian side

 Bioprospecting of Adriatic See, Croatian Government and the European Union through the European Regional Development Fund - the Competitiveness and Cohesion Operational Programme (KK.01.1.1.01) – The Scientific Centre of Excellence for Marine Bioprospecting -BioProCro granted to Rozelinda Čož-Rakovac, (2017-), associate/researcher

  Investigation of chemism and antioxidant activity of complexes of polyphenols with essential metals, CRO-SRB project (2016-2017), Ministry of Science Education and Sports of the Republic of Croatia, researcher from the Croatian side

  Developing methods for modeling properties of bioactive molecules and proteins (2012-2014), project leader, Ministry of Science, Education and Sports of the Republic of Croatia

  Investigation of relationships between structure and biological activity of polyphenols, CRO-SRB project (2011-2012), project leader from the Croatian side, Ministry of Science Education and Sports of the Republic of Croatia

  Developing methods for modeling properties of bioactive molecules and proteins (2007-2011), associate/researcher, Ministry of Science Education and Sports of the Republic of Croatia, researcher

  Development and application of models in chemistry and bioinformatics (2002-2006), associate/researcher, Ministry of Science Education and Sports of the Republic of Croatia

  Toxicity and carcinogenicity of organic molecules on living organisms in the environment, HR-SLO project (2001-2003), project leader from the Croatian side, Ministry of Science Education and Sports of the Republic of Croatia

  IQ QSAR program (2001-2004), project co-leader, PLIVA, Zagreb

  Predicting structure of proteins and bio-active molecules (1998-2001), project leader, Ministry of Science Education and Sports of the Republic of Croatia

  Development and application of models in chemistry (1996-2002), associate/researcher, Ministry of Science Education and Sports of the Republic of Croatia

  Development and application of models in chemistry (1992-1996), associate/researcher, Ministry of Science Education and Sports of the Republic of Croatia

  Predicting structure and activity of membrane polypeptides (1991-1992), associate/researcher, Ministry of Science Education and Sports of the Republic of Croatia

• Bioprospecting of the Adriatic Sea - DOK

  04.10.2018 - 03.10.2022 | 500,000.00 HRK

  CroRISIRB

• Application of gas plasma and ultrasound in starch modification processes

  22.03.2016 - 22.03.2017 | 59,000.00 HRK

  CroRISIRB

• Antioxidant activity of lignans

  25.09.2013 - 25.09.2014 | 1,140.00 EUR

  CroRISIRB

• Developing methods for modeling properties of bioactive molecules and proteins

  01.01.2007 - 31.12.2014 | 687,278.54 HRK

  CroRISIRB

2022, Associate Professor (honorary position) at the J. J. Strossmayer University in Osijek, Osijek, Croatia

Structural bioinformatics of proteins and bioactive molecules, PhD Study of Molecular Biosciences (2008-) (organized by: University of Osijek, Ruđer Bošković Institute and University of Dubrovnik)

Models and methods in structural bioinformatics, PhD Study of Biophysics (2009-) (organized by: University of Split, Ruđer Bošković Institute (Zagreb), Institute of Physics (Zagreb),  and Mediterranean Institute for Life Sciences (Split))

Member of the Council of PhD study Biophysics (2009-2018), University of Split, Croatia

Mentorships

Two PhD Dissertations - at the University of Zagreb, Croatia (in theoretical chemistry) and at the University of Split, Croatia (in biophysics)

One M.Sc. Thesis at the University of Zagreb, Croatia (technical sciences)

Three B.Sc. Thesis at the University of Zagreb, Croatia - at the Faculty of Science (one in physics/biophysics and another one in chemistry) and at the Faculty of Pharmacy and Biochemistry (in pharmacy)

Lovrić, Mario; Malev, Olga; Klobučar, Goran; Kern, Roman; Liu, Jay; Lučić, Bono, Predictive Capability of QSAR Models Based on the CompTox Zebrafish Embryo Assays: An Imbalanced Classification Problem. // Molecules, 26 (2021), 6; 1617, 15 doi:10.3390/molecules26061617

Cichońska, Anna; Ravikumar, Balaguru; Allaway, Robert J.; Wan, Fangping; Park, Sungjoon; Isayev, Olexandr; Li, Shuya; Mason, Michael; Lamb, Andrew; Tanoli, Ziaurrehman et al., Crowdsourced mapping of unexplored target space of kinase inhibitors. // Nature communications, 12 (2021), 3307, 18 doi:10.1038/s41467-021-23165-1

Lovrić, Mario; Pavlović, Kristina; Žuvela, Petar; Spataru, Adrian; Lučić, Bono; Kern, Roman; Wong, Ming Wah, Machine learning in prediction of intrinsic aqueous solubility of drug‐like compounds: Generalization, complexity, or predictive ability?. // Journal of chemometrics, 35 (2021), 7-8; e3349, 16 doi:10.1002/cem.3349

Lučić, Bono; Batista, Jadranko; Bojović, Viktor; Lovrić, Mario; Sović Kržić, Ana; Bešlo, Drago; Nadramija, Damir; Vikić-Topić, Dražen, Estimation of Random Accuracy and its Use in Validation of Predictive Quality of Classification Models within Predictive Challenges // Croatica Chemica Acta, 92 (2019), 3; 226865, 13 doi:10.5562/cca3551

Amić, Ana; Marković, Zoran; Dimitrić Marković, Jasmina M., Milenković, Dejan; Lučić, Bono, The role of guaiacyl moiety in free radical scavenging by 3, 5-dihydroxy-4-methoxybenzyl alcohol: Thermodynamics of 3H+/3e- mechanisms // Molecular physics, 117 (2019), 2; 207-217 doi:10.1080/00268976.2018.1508777

Amić, Ana; Lučić, Bono; Stepanić, Višnja; Marković, Zoran; Marković, Svetlana; Dimitrić Marković, Jasmina; Amić, Dragan, Free radical scavenging potency of quercetin catecholic colonic metabolites: thermodynamics of 2H+/2e- processes // Food chemistry, 218 (2017), 144-151 doi:10.1016/j.foodchem.2016.09.018

Batista, Jadranko; Vikić-Topić, Dražen; Lučić, Bono, The difference between the accuracy of real and the corresponding random model is a useful parameter for validation of two-state classification model quality // Croatica chemica acta, 89 (2016), 4; 527-534 doi:10.5562/cca3117

Filipović, Miloš; Marković, Zoran; Đorović, Jelena; Dimitrić Marković, Jasmina; Lučić, Bono; Amić, Dragan, QSAR of the free radical scavenging potency of selected hydroxybenzoic acids and simple phenolics // Comptes rendus. Chimie, 18 (2015), 5; 492-498 doi:10.1016/j.crci.2014.09.001

Amić, Ana; Marković, Zoran; Dimitrić Marković, Jasmina; Stepanić, Višnja; Lučić, Bono; Amić, Dragan, Towards an improved prediction of the free radical scavenging potency of flavonoids: The significance of double PCET mechanisms // Food chemistry, 152 (2014), 578-585 doi:10.1016/j.foodchem.2013.12.025

Lučić, Bono; Stepanić, Višnja; Plavšić, Dejan; Amić, Ana; Amić, Dragan, Correlation between 13C NMR chemical shifts and antiradical activity of flavonoids // Monatshefte für Chemie, 145 (2014), 3; 457-463 doi:10.1007/s00706-013-1130-4

Stepanić, Višnja; Gall Trošelj, Koraljka; Lučić, Bono; Marković, Zoran; Amić, Dragan, Bond dissociation free energy as a general parameter for flavonoid radical scavenging activity // Food chemistry, 141 (2013), 2; 1562-1570 doi:10.1016/j.foodchem.2013.03.072,

Tanabe, Kazutoshi; Kurita, Takio; Nishida, Kenji; Lučić, Bono; Amić, Dragan; Suzuki, Takahiro, Improvement of carcinogenicity prediction performances based on sensitivity analysis in variable selection of SVM models // SAR and QSAR in environmental research, 24 (2013), 7; 565-580

Lučić, Bono; Sović, Ivan; Batista, Jadranko; Skala, Karolj; Plavšić, Dejan; Vikić-Topić, Dražen; Bešlo, Drago; Nikolić, Sonja; Trinajstić, Nenad, The Sum-Connectivity Index - An Additive Variant of the Randić Connectivity Index // Current computer-aided drug design, 9 (2013), 2; 184-194 doi:10.2174/1573409911309020004

Marković, Zoran; Milenković, Dejan; Đorović, Jelena; Dimitrić Marković, Jasmina; Stepanić, Višnja; Lučić, Bono; Amić, Dragan, PM6 and DFT study of free radical scavenging activity of morin // Food chemistry, 134 (2012), 4; 1754-1760 doi:10.1016/j.foodchem.2012.03.124

Tanabe, Kazutoshi; Lučić, Bono; Amić, Dragan; Kurita, Takio; Kaihara, Mikio; Onodera, Natsuo; Suzuki, Takahiro, Prediction of carcinogenicity for diverse chemicals based on substructure grouping and SVM modeling // Molecular diversity, 14 (2010), 4; 789-802 doi:10.1007/s11030-010-9232-y

Amić, Dragan; Lučić, Bono, Reliability of bond dissociation enthalpy calculated by the PM6 method and experimental TEAC values in antiradical QSAR of flavonoids // Bioorganic & medicinal chemistry, 18 (2010), 1; 28-35 doi:10.1016/j.bmc.2009.11.015

Lučić, Bono; Trinajstić, Nenad; Zhou, Bo, Comparison between the sum-connectivity index and product-connectivity index for benzenoid hydrocarbons // Chemical physics letters, 475 (2009), 1-3; 146-148 doi:10.1016/j.cplett.2009.05.022

Amić, Dragan; Davidović-Amić, Dušanka; Bešlo, Drago; Rastija, Vesna; Lučić, Bono; Trinajstić, Nenad, SAR and QSAR of the Antioxidant Activity of Flavonoids // Current Medicinal Chemistry, 14 (2007), 7; 827-845

Piližota, Teuta; Lučić, Bono; Trinajstić, Nenad, Use of variable selection in modeling the secondary structural content of proteins from their composition of amino acid residues // Journal of Chemical Information and Computer Sciences, 44 (2004), 1; 113-121

Lučić, Bono; Nadramija, Damir; Bašic, Ivan; Trinajstić, Nenad, Toward generating simpler QSAR models: Nonlinear multivariate regression versus several neural network ensembles and some related methods // Journal of chemical information and computer sciences, 43 (2003), 4; 1094-1102

Lučić, Bono; Amić, Dragan; Trinajstić, Nenad, Nonlinear Multivariate Regression Outperforms Several Concisely Designed Neural Networks on Three QSPR Data Sets // Journal of Chemical Information and Computer Sciences, 40 (2000), 2; 403-413

Lučić, Bono; Trinajstić, Nenad; Sild, S.; Karelson, M.; Katritzky, A.R. A new efficient approach for variable selection based on multiregression : prediction of gas chromatographic retention time and response factors // Journal of chemical information and computer sciences, 39 (1999), 3; 610-621

Lučić, Bono; Trinajstić, Nenad, Multivariate regression outperforms several robust architectures of neural networks in QSAR modeling // Journal of chemical information and computer sciences, 39 (1999), 1; 121-132 doi:10.1021/ci980090f

Juretić, Davor; Zucić, Damir; Lučić, Bono; Trinajstić, Nenad, Preference Functions for Prediction of Membrane-buried Helices in Integral Membrane Proteins // Computers & chemistry, 22 (1998), 4; 279-294

Lučić, Bono; Nikolić, Sonja; Trinajstić, Nenad; Juretić, Davor, The Structure-Property Models Can Be Improved Using the Orthogonalized Descriptors // Journal of chemical information and computer sciences, 35 (1995), 532-538 doi:10.1021/ci00025a022

Conference proceedings

• 4. znanstveni sastanak hrvatskih biofizičara : zbornik radova / Svetličić, Vesna ; Lučić, Bono ; Hozić-Zimmermann, Amela (ur.). Zagreb: Institut Ruđer Bošković, 2005

Original scientific paper

• Cirino, Thalita; Pinto, Luis; Iwan, Mateusz; Dougha, Alexis; Lučić, Bono; Kraljević, Antonija; Navoyan, Zaven; Tevosyan, Ani; Yeghiazaryan, Hrach; Khondkaryan, Lusine et al. | Consensus Modeling Strategies for Predicting Transthyretin Binding Affinity from Tox24 Challenge Data // Chemical research in toxicology, 38 (2025), 6; 1061-1071. doi: 10.1021/acs.chemrestox.5c00018

  doipubs.acs.orgfulir.irb.hr

• Tartaro Bujak, Ivana; Klarić, David; Lučić, Bono; Bojanić, Krunoslav; Bujak, Maro; Galić, Nives | Radiolytic Elimination of Nabumetone from Aqueous Solution: Degradation Efficiency, and Degradants’ Toxicity // Molecules, 30 (2025), 1; 64, 21. doi: 10.3390/molecules30010064

  doiwww.mdpi.comfulir.irb.hr

• Vujica, Lana; Lončar, Jovica; Mišić, Lana; Lučić, Bono; Radman, Katarina; Mihaljević, Ivan; Bertoša, Branimir; Mesarić, Josip; Horvat, Marina; Smital, Tvrtko | Environmental contaminants modulate transport activity of zebrafish (Danio rerio) multidrug and toxin extrusion protein 3 (Mate3/Slc47a2.1) // Science of the total environment, 901 (2023), 165956, 9. doi: 10.1016/j.scitotenv.2023.165956

  doiwww.sciencedirect.com

• Daghighi, Amirreza ; Casanola-Martin, Gerardo M. ; Timmerman, Troy ; Milenković, Dejan ; Lučić, Bono ; Rasulev, Bakhtiyor | In Silico Prediction of the Toxicity of Nitroaromatic Compounds: Application of Ensemble Learning QSAR Approach // Toxics, 10 (2022), 12; 746, 14. doi: 10.3390/toxics10120746

  doiwww.mdpi.comfulir.irb.hr

• Bešlo, Drago ; Došlić, Gloria ; Agić, Dejan ; Rastija, Vesna ; Šperanda, Marcela ; Gantner, Vesna ; Lučić, Bono | Polyphenols in ruminant nutrition and their effects on reproduction // Antioxidants, 11 (2022), 5; 970, 22. doi: 10.3390/antiox11050970

  doifulir.irb.hrwww.mdpi.com

• Cichońska, Anna ; Ravikumar, Balaguru ; Allaway, Robert J. ; Wan, Fangping ; Park, Sungjoon ; Isayev, Olexandr ; Li, Shuya ; Mason, Michael ; Lamb, Andrew ; Tanoli, Ziaurrehman et al. | Crowdsourced mapping of unexplored target space of kinase inhibitors // Nature communications, 12 (2021), 3307, 18. doi: 10.1038/s41467-021-23165-1

  doiwww.nature.comdoi.orgfulir.irb.hr

• Lovrić, Mario ; Pavlović, Kristina ; Žuvela, Petar ; Spataru, Adrian ; Lučić, Bono ; Kern, Roman ; Wong, Ming Wah | Machine learning in prediction of intrinsic aqueous solubility of drug‐like compounds: Generalization, complexity, or predictive ability? // Journal of chemometrics, 35 (2021), 7-8; e3349, 16. doi: 10.1002/cem.3349

  doianalyticalsciencejournals.onlinelibrary.wiley.comdoi.orgfulir.irb.hr

• Lovrić, Mario ; Malev, Olga ; Klobučar, Goran ; Kern, Roman ; Liu, Jay ; Lučić, Bono | Predictive Capability of QSAR Models Based on the CompTox Zebrafish Embryo Assays: An Imbalanced Classification Problem // Molecules, 26 (2021), 6; 1617, 15. doi: 10.3390/molecules26061617

  doiwww.mdpi.comdoi.orgfulir.irb.hr

• Bešlo, Drago; Bešlo, Klara; Agić, Dejan; Vikić-Topić, Dražen; Lučić, Bono | Variations of Total Phenolic Content in Honey Samples Caused by Different Calibration Lines // Croatica chemica acta, 93 (2020), 4; 367-375. doi: 10.5562/cca3805

  doihrcak.srce.hrfulir.irb.hr

• Lučić, Bono ; Batista, Jadranko ; Bojović, Viktor ; Lovrić, Mario ; Sović Kržić, Ana ; Bešlo, Drago ; Nadramija, Damir ; Vikić-Topić, Dražen | Estimation of random accuracy and its use in validation of predictive quality of classification models within predictive challenges // Croatica chemica acta, 92 (2019), 3; 379-391. doi: 10.5562/cca3551

  doihrcak.srce.hrdoi.orgfulir.irb.hr

• Stepanić, Višnja ; Matić, Sara ; Amić, Ana ; Lučić, Bono ; Milenković , Dejan ; Marković, Zoran | Effects of conjugation metabolism on radical scavenging and transport properties of quercetin – In silico study // Journal of molecular graphics & modelling, 86 (2019), 278-285. doi: 10.1016/j.jmgm.2018.10.023

  doiwww.sciencedirect.com

• Amić, Ana ; Marković, Zoran ; Dimitrić Marković, Jasmina M. ; Milenković, Dejan ; Lučić, Bono | The role of guaiacyl moiety in free radical scavenging by 3, 5-dihydroxy-4-methoxybenzyl alcohol: Thermodynamics of 3H+/3e- mechanisms // Molecular physics, 117 (2019), 2; 207-217. doi: 10.1080/00268976.2018.1506174

  doiwww.tandfonline.comdoi.org

• Matić, Sara ; Jadrijević-Mladar Takač, Milena ; Barbarić, Monika ; Lučić, Bono ; Gall Trošelj, Koraljka ; Stepanić, Višnja | he Influence of In Vivo Metabolic Modifications on ADMET Properties of Green Tea Catechins-In Silico Analysis // Journal of pharmaceutical sciences, 107 (2018), 11; 2957-2964. doi: 10.1016/j.xphs.2018.07.026

  doiwww.sciencedirect.com

• Amić, Ana ; Lučić, Bono ; Stepanić, Višnja ; Marković, Zoran ; Marković, Svetlana ; Dimitrić Marković, Jasmina ; Amić, Dragan | Free radical scavenging potency of quercetin catecholic colonic metabolites: thermodynamics of 2H+/2e- processes // Food chemistry, 218 (2017), 144-151. doi: 10.1016/j.foodchem.2016.09.018

  doiwww.sciencedirect.com

• Amić, Ana ; Marković, Zoran ; Dimitrić Marković, Jasmina ; Lučić, Bono ; Stepanić, Višnja ; Amić, Dragan | The 2H+/2e− free radical scavenging mechanisms of uric acid: thermodynamics of N-H bond cleavage // Computational and theoretical chemistry, 1077 (2016), 2-10. doi: 10.1016/j.comptc.2015.09.003

  doiwww.sciencedirect.comdx.doi.org

• Amić, Ana ; Marković, Zoran ; Dimitrić Marković, Jasmina ; Jeremić, Svetlana ; Lučić, Bono ; Amić, Dragan | Free radical scavenging and COX-2 inhibition by simple colon metabolites of polyphenols: A theoretical approach // Computational biology and chemistry, 65 (2016), 45-53. doi: 10.1016/j.compbiolchem.2016.09.013

  doiwww.sciencedirect.com

• Amić, Ana ; Lučić, Bono ; Marković, Zoran ; Amić, Dragan | Carboxyl Group as a Radical Scavenging Moiety: Thermodynamics of 2H+/2e– Processes of Phloretic Acid // Croatica chemica acta, 89 (2016), 4; 517-525. doi: 10.5562/cca3024

  doihrcak.srce.hrdoi.org

• Batista, Jadranko ; Vikić-Topić, Dražen ; Lučić, Bono | The difference between the accuracy of real and the corresponding random model is a useful parameter for validation of two-state classification model quality // Croatica chemica acta, 89 (2016), 4; 527-534. doi: 10.5562/cca3117

  doihrcak.srce.hrdoi.orgfulir.irb.hr

• Filipović, Miloš ; Marković, Zoran ; Đorović, Jelena ; Dimitrić Marković, Jasmina ; Lučić, Bono ; Amić, Dragan | QSAR of the free radical scavenging potency of selected hydroxybenzoic acids and simple phenolics // Comptes rendus. Chimie, 18 (2015), 5; 492-498. doi: 10.1016/j.crci.2014.09.001

  doiwww.sciencedirect.com

• Amić, Dragan ; Lučić, Bono ; Amić, Ana ; Marković, Zoran | On the Novel ETE2 and BDE2 Molecular Descriptors of Flavonoid Free Radical Scavenging Potency // International journal of chemical modeling, 6 (2014), 2-3; 287-299

• Dimitrić Marković, Jasmina ; Amić, Dragan ; Lučić, Bono ; Marković, Zoran | Oxidation of kaempferol and its iron(III) complex by DPPH radical: spectroscopic and theoretical study // Monatshefte für Chemie, 145 (2014), 4; 557-563. doi: 10.1007/s00706-013-1135-z

  doilink.springer.comdoi.org

• Lučić, Bono ; Stepanić, Višnja ; Plavšić, Dejan ; Amić, Ana ; Amić, Dragan | Correlation between 13C NMR chemical shifts and antiradical activity of flavonoids // Monatshefte für Chemie, 145 (2014), 3; 457-463. doi: 10.1007/s00706-013-1130-4

  doilink.springer.comdoi.org

• Amić, Ana ; Marković, Zoran ; Dimitrić Marković, Jasmina ; Stepanić, Višnja ; Lučić, Bono ; Amić, Dragan | Towards an improved prediction of the free radical scavenging potency of flavonoids: The significance of double PCET mechanisms // Food chemistry, 152 (2014), 578-585. doi: 10.1016/j.foodchem.2013.12.025

  doidoi.orgwww.sciencedirect.com

• Lučić, Bono ; Sović, Ivan ; Batista, Jadranko ; Skala, Karolj ; Plavšić, Dejan ; Vikić-Topić, Dražen ; Bešlo, Drago ; Nikolić, Sonja ; Trinajstić, Nenad | The Sum-Connectivity Index - An Additive Variant of the Randić Connectivity Index // Current computer-aided drug design, 9 (2013), 2; 184-194. doi: 10.2174/1573409911309020004

  doieurekaselect.com

• Lučić, Bono ; Sović, Ivan ; Bešlo, Drago ; Plavšić, Dejan ; Vikić-Topić, Dražen ; Trinajstić, Nenad. | On the Novel Balaban-like and Balaban-Detour-like Molecular Descriptors // International journal of chemical modeling, 5 (2013), 2/3; 277-294

  www.novapublishers.com

• Stepanić, Višnja ; Gall Trošelj, Koraljka ; Lučić, Bono ; Marković, Zoran ; Amić, Dragan | Bond dissociation free energy as a general parameter for flavonoid radical scavenging activity // Food chemistry, 141 (2013), 2; 1562-1570. doi: 10.1016/j.foodchem.2013.03.072

  doiwww.sciencedirect.comac.els-cdn.comdx.doi.org

• Amić, Dragan ; Stepanić, Višnja ; Lučić, Bono ; Marković, Zoran ; Dimitrić Marković, Jasmina | PM6 study of free radical scavenging mechanisms of flavonoids: why does O–H bond dissociation enthalpy effectively represent free radical scavenging activity? // Journal of molecular modeling, 19 (2013), 6; 2593-2603. doi: 10.1007/s00894-013-1800-5

  doilink.springer.comdoi.org

• Marković, Zoran ; Milenković, Dejan ; Đorović, Jelena ; Dimitrić Marković, Jasmina ; Lučić, Bono ; Amić, Dragan | A DFT and PM6 study of free radical scavenging activity of ellagic acid // Monatshefte für Chemie, 144 (2013), 6; 803-812. doi: 10.1007/s00706-013-0949-z

  doilink.springer.comdoi.org

• Tanabe, Kazutoshi ; Kurita, Takio ; Nishida, Kenji ; Lučić, Bono ; Amić, Dragan ; Suzuki, Takahiro | Improvement of carcinogenicity prediction performances based on sensitivity analysis in variable selection of SVM models // SAR and QSAR in environmental research, 24 (2013), 7; 565-580

• Dimitrić Marković, Jasmina ; Marković, Zoran ; Krstić, Jugoslav ; Milenković, Dejan ; Lučić, Bono ; Amić, Dragan | Interpretation of the IR and Raman spectra of morin by density functional theory and comparative analysis // Vibrational spectroscopy, 64 (2013), 1-9. doi: 10.1016/j.vibspec.2012.10.006

  doiwww.sciencedirect.comdoi.org

• Marković, Zoran ; Milenković, Dejan ; Đorović, Jelena ; Dimitrić Marković, Jasmina ; Stepanić, Višnja ; Lučić, Bono ; Amić, Dragan | PM6 and DFT study of free radical scavenging activity of morin // Food chemistry, 134 (2012), 4; 1754-1760. doi: 10.1016/j.foodchem.2012.03.124

  doidx.doi.orgwww.sciencedirect.com

• Marković, Zoran ; Milenković, Dejan ; Đorović, Jelena ; Dimitrić Marković, Jasmina ; Stepanić, Višnja ; Lučić, Bono ; Amić, Dragan | Free radical scavenging activity of morin 2’-O− phenoxide anion // Food chemistry, 135 (2012), 3; 2070-2077. doi: 10.1016/j.foodchem.2012.05.119

  doidx.doi.orgwww.sciencedirect.com

• Tanabe, Kazutoshi ; Lučić, Bono ; Amić, Dragan ; Kurita, Takio ; Kaihara, Mikio ; Onodera, Natsuo ; Suzuki, Takahiro | Prediction of carcinogenicity for diverse chemicals based on substructure grouping and SVM modeling // Molecular diversity, 14 (2010), 4; 789-802. doi: 10.1007/s11030-010-9232-y

  doilink.springer.comdoi.org

• Vukičević, Damir ; Trinajstić, Nenad ; Nikolić, Sonja ; Lučić, Bono ; Zhou, Bo | Master connectivity index and master connectivity polynomial // Current computer-aided drug design, 6 (2010), 4; 235-239. doi: 10.2174/1573409911006040235

  doiwww.eurekaselect.com

• Amić, Dragan ; Lučić, Bono | Reliability of bond dissociation enthalpy calculated by the PM6 method and experimental TEAC values in antiradical QSAR of flavonoids // Bioorganic & medicinal chemistry, 18 (2010), 1; 28-35. doi: 10.1016/j.bmc.2009.11.015

  doiwww.sciencedirect.comdoi.org

• Lučić, Bono ; Trinajstić, Nenad ; Zhou, Bo | Comparison between the sum-connectivity index and product-connectivity index for benzenoid hydrocarbons // Chemical physics letters, 475 (2009), 1-3; 146-148. doi: 10.1016/j.cplett.2009.05.022

  doiwww.sciencedirect.comdoi.org

• Amić, Dragan ; Lučić, Bono ; Kovačević, Goran ; Trinajstić, Nenad | Bond dissociation enthalpies calculated by the PM3 method confirm activity cliffs in radical scavenging of flavonoids // Molecular diversity, 13 (2009), 1; 27-36. doi: 10.1007/s11030-008-9095-7

  doilink.springer.comdoi.org

• Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad | Distance-Related Molecular Descriptors // Internet electronic journal of molecular design, 7 (2008), 195-206

  biochempress.com

• Janežič, Dušanka ; Lučić, Bono ; Miličević, Ante ; Nikolić, Sonja ; Trinajstić, Nenad ; Vukičević, Damir | Hosoya Matrices as the Numerical Realization of Graphical Matrices and Derived Structural Descriptors // Croatica chemica acta, 80 (2007), 2; 271-276

• Janežič, Dušanka ; Lučić, Bono ; Nikolić, Sonja ; Miličević, Ante ; Trinajstić, Nenad | Boiling Points of Alcohols - A Comparative QSPR Study // Internet electronic journal of molecular design, 5 (2006), 4; 192-200-x

  biochempress.com

• Supek, Fran ; Šmuc, Tomislav ; Lučić, Bono | A prototype structure-activity relationship model based on National Cancer Institute cell line screening data // Periodicum biologorum, 107 (2005), 4; 451-455-x

• Piližota, Teuta ; Lučić, Bono ; Trinajstić, Nenad | Use of variable selection in modeling the secondary structural content of proteins from their composition of amino acid residues // Journal of chemical information and computer sciences, 44 (2004), 1; 113-121-x

• Lučić, Bono ; Nadramija, Damir ; Bašic, Ivan ; Trinajstić, Nenad | Toward generating simpler QSAR models: Nonlinear multivariate regression versus several neural network ensembles and some related methods // Journal of chemical information and computer sciences, 43 (2003), 4; 1094-1102-x

• Lučić, Bono ; Miličević, Ante ; Nikolić, Sonja ; Trinajstić, Nenad | On variable Wiener index // Indian journal of chemistry. Sect. A: Inorganic, physical, theoretical & analytical, 42 (2003), 6; 1279-1282-x

• Lučić, Bono ; Miličević, Ante ; Nikolić, Sonja ; Trinajstić, Nenad | Harary index - Twelve years later // Croatica chemica acta, 75 (2002), 4; 847-868

• Lučić, Bono ; Bašic, Ivan ; Nadramija, Damir ; Miličević, Ante ; Trinajstić, Nenad ; Suzuki, Takahiro ; Petrukhin, Ruslan ; Karelson, Mati ; Katritzky, Alan, R. | Correlation of liquid viscosity with molecular structure for organic compounds using different variable selection methods // ARKIVOC, (2002), 4; 45-59. doi: 10.3998/ark.5550190.0003.406

  doiquod.lib.umich.edu

• Amić, Dragan ; Basak S.C. ; Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad | Structure-water solubility modeling of aliphatic alcohols using the weighted path numbers // SAR and QSAR in environmental research, 13 (2002), 2; 281-295. doi: 10.1080/10629360290002776

  doiwww.tandfonline.com

• Amić, Dragan ; Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad | Predicting inhibition of microsomal p- hydroxylation of aniline by aliphatic alcohols: a QSAR approach based on the weighted path numbers // Croatica chemica acta, 74 (2001), 2; 237-250

  hrcak.srce.hr

• Lučić, Bono ; Istvan, Lukovits ; Nikolić, Sonja ; Nenad, Trinajstić | Distance-related indexes in the quantitative structure-property relationship modeling // Journal of chemical information and computer sciences, 41 (2001), 527-535

• Lučić, Bono ; Amić, Dragan ; Trinajstić, Nenad | Nonlinear Multivariate Regression Outperforms Several Concisely Designed Neural Networks on Three QSPR Data Sets // Journal of chemical information and computer sciences, 40 (2000), 2; 403-413-x

• Katritzky, A.R. ; Chen, K. ; Wang, Y. ; Karelson, M. ; Lučić, Bono ; Trinajstić, Nenad ; Suzuki, T. ; Schüürmann, G. | Prediction of liquid viscosity for organic compounds by a quantative structure-property relationship // Journal of physical organic chemistry, 13 (2000), 1; 80-86-x

• Basak, S.C. ; Gute, B.D. ; Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad | A comparative QSAR study of benzamidines complement-inhibitory activity and benzene derivatives acute toxicity // Computers & chemistry, 24 (2000), 2; 181-191-x

• Lučić, Bono ; Trinajstić, Nenad ; Sild, S. ; Karelson, M. ; Katritzky, A.R. | A new efficient approach for variable selection based on multiregression : prediction of gas chromatographic retention time and response factors // Journal of chemical information and computer sciences, 39 (1999), 3; 610-621-x

• Lučić, Bono ; Trinajstić, Nenad | Multivariate regression outperforms several robust architectures of neural networks in QSAR modeling // Journal of chemical information and computer sciences, 39 (1999), 1; 121-132. doi: 10.1021/ci980090f

  doipubs.acs.orgpubs.acs.org

• Amić, Dragan ; Davidović-Amić, Dušanka ; Bešlo, Drago ; Lučić, Bono ; Trinajstić, Nenad | Prediction of pK Values, half-lives and electronic spectra of flavylium salts from molecular structure // Journal of chemical information and computer sciences, 39 (1999), 6; 967-973-x

• Amić, Dragan ; Bešlo, Drago ; Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad | The vertex-connectivity index revisited // Journal of chemical information and computer sciences, 38 (1998), 5; 819-822-x

• Juretić, Davor ; Zucić, Damir ; Lučić, Bono ; Trinajstić, Nenad | Preference Functions for Prediction of Membrane-buried Helices in Integral Membrane Proteins // Computers & chemistry, 22 (1998), 4; 279-294-x

• Amić, Dragan ; Davidović-Amić, Dušanka ; Bešlo, Drago ; Lučić, Bono ; Trinajstić, Nenad | QSAR of flavylium salts as inhibitors of xanthine oxidase // Journal of chemical information and computer sciences, 38 (1998), 5; 815-818-x

• Trinajstić, Nenad ; Nikolić, Sonja ; Lučić, Bono ; Amić, Dragan ; Mihalić, Zlatko | The detour matrix in chemistry // Journal of chemical information and computer sciences, 37 (1997), 4; 631-638. doi: 10.1021/ci960149n

  doipubs.acs.orgdoi.org

• Amić, Dragan ; Davidović-Amić, Dušanka ; Bešlo, Drago ; Lučić, Bono ; Trinajstić, Nenad | A simple QSAR model for trypsin aminopeptidase inhibitory flavonoids // Croatica chemica acta, 70 (1997), 4; 905-911-x

• Amić, Dragan ; Davidović-Amić, Dušanka ; Bešlo, Drago ; Trinajstić, Nenad ; Lučić, Bono | The use of the ordered orthogonalized multivariate linear regression in a structure- activity study of coumarin and flavonoid derivatives as inhibitors of aldose reductase // Journal of chemical information and computer sciences, 37 (1997), 3; 581-586. doi: 10.1021/ci960158w

  doipubs.acs.orgdoi.org

• Klein, D.J. ; Randić, Milan ; Babić, Darko ; Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad | Hierarchical Orthogonalization of Descriptors // International journal of quantum chemistry, 63 (1997), 1; 215-222. doi: 10.1002/(SICI)1097-461X(1997)63:1<215::AID-QUA22>3.0.CO;2-9

  doionlinelibrary.wiley.comonlinelibrary.wiley.com

• Lučić, Bono ; Trinajstić, Nenad | New Development in QSPR/QSAR Modeling Based on Topological Indices // SAR and QSAR in environmental research, 5 (1997), 45-62

• Trinajstić, Nenad ; Nikolić, Sonja ; Lučić, Bono ; Amić, Dragan | On QSAR Modeling // Acta pharmaceutica, 46 (1996), 4; 249-263

• Amić, Dragan ; Davidović-Amić, Dušanka ; Bešlo, Drago ; Lučić, Bono ; Trinajstić, Nenad | Structure-activity correlation of flavone derivatives for inhibition of cAMP phosphodiesterase // Journal of chemical information and computer sciences, 35 (1995), 6; 1034-1038. doi: 10.1021/ci00028a013

  doipubs.acs.orgdoi.org

• Juretić, Davor ; Lučić, Bono ; Trinajstić, Nenad | Secondary Structure Prediction Quality for Naturally Occurring Amino Acids in Soluble Proteins // Journal of molecular structure. Theochem, 338 (1995), 43-50. doi: 10.1016/0166-1280(94)04047-V

  doiwww.sciencedirect.com

• Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad ; Juretić, Davor ; Jurić, Albin | Novel QSPR Approach to Physicochemical Properties of the Alpha-Amino-Acids // Croatica chemica acta, 68 (1995), 3; 435-450

  hrcak.srce.hrhrcak.srce.hr

• Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad ; Jurić, Albin ; Mihalić, Zlatko | A Structure-Property Study of the Solubility of Aliphatic-Alcohols in Water // Croatica chemica acta, 68 (1995), 3; 417-434

  hrcak.srce.hr

• Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad ; Juretić, Davor | The Structure-Property Models Can Be Improved Using the Orthogonalized Descriptors // Journal of chemical information and computer sciences, 35 (1995), 532-538. doi: 10.1021/ci00025a022

  doipubs.acs.org

• Juretić, Davor ; Trinajstić, Nenad ; Lučić, Bono | Protein Secondary Structure Conformations and Associated Hydrophobicity Scale // Journal of mathematical chemistry, 14 (1993), 1; 35-45. doi: 10.1007/BF01164453

  doilink.springer.com

• Juretić, Davor ; Lučić, Bono ; Trinajstić, Nenad | Predicting Membrane Protein Secondary Structure: Preference Functions Method for Finding Optimal Conformational Parameters // Croatica chemica acta, 66 (1993), 2; 201-208

  hrcak.srce.hrhrcak.srce.hr

Other

• Juretić, Davor ; Lučić, Bono ; Trinajstić, Nenad | Why focusing on bioinformatics? // Periodicum biologorum, 107 (2005), 4; 379-383-x

• Lučić, Bono ; Trinajstić, Nenad | O citiranosti hrvatskih kemičara // Polimeri : časopis za plastiku i gumu, 19 (1998), 219-219

Professional paper

• Lučić, Bono ; Trinajstić, Nenad | Citiranost hrvatskih kemičara od početka 1981. do lipnja 1997. // Kemija u industriji : časopis kemičara i tehnologa Hrvatske, 48 (1999), 33-33

• Lučić, Bono ; Trinajstić, Nenad ; Juretić, Davor | Od sekvencije do konformacije proteina. I // Polimeri : časopis za plastiku i gumu, 17 (1996), 3; 119-128

Review article (scientific)

• Bešlo, Drago ; Golubić, Nataša ; Rastija, Vesna ; Agić, Dejan ; Karnaš, Maja ; Šubarić, Domagoj ; Lučić, Bono | Antioxidant Activity, Metabolism, and Bioavailability of Polyphenols in the Diet of Animals // Antioxidants, 12 (2023), 6; 1141, 27. doi: 10.3390/antiox12061141

  doiwww.mdpi.comwww.mdpi.comfulir.irb.hrfulir.irb.hr

• Juretić, Davor ; Vukičević, Damir ; Petrov, Dražen ; Novković, Mario ; Bojović, Viktor ; Lučić, Bono ; Ilić, Nada ; Tossi, Alessandro | Knowledge-based computational methods for identifying or designing novel, non-homologous antimicrobial peptides // European biophysics journal, 40 (2011), 4; 371-385. doi: 10.1007/s00249-011-0674-7

  doiwww.springerlink.com

• Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad | Távolságfüggő molekuláris deszkriptorok // Magyar kémiai folyóirat, Kémiai közlemények, 114 (2008), 4; 171-175

• Amić, Dragan ; Davidović-Amić, Dušanka ; Bešlo, Drago ; Rastija, Vesna ; Lučić, Bono ; Trinajstić, Nenad | SAR and QSAR of the Antioxidant Activity of Flavonoids // Current medicinal chemistry, 14 (2007), 7; 827-845-x

Review, commentary, critique

• Lučić, Bono ; Trinajstić, Nenad | Most cited papers in Croatica Chemica Acta // Croatica chemica acta, 83 (2010), 3; 307-312

  hrcak.srce.hr

Review article (professional)

• Lučić, Bono ; Putz, Mihai V. | Laudatio for Nenad Trinajstic at his 55th Scientific Research Anniversary // International journal of chemical modeling, 6 (2014), 2-3; 167-175

  search.proquest.com

Original scientific paper

• Tanabe, Kazutoshi ; Lučić, Bono ; Amić, Dragan ; Suzuki, Takahiro | Carcinogenicity modelling of diverse chemicals based on substructure grouping and support vector machines // Journal of pharmacy and pharmacology, 2009. str. A65-A66

Conference abstract

• Stepanić, Višnja ; Matić, Sara ; Lučić, Bono ; Jadrijević-Mladar Takač, Milena ; Barbarić, Monika ; Gall Trošelj, Koraljka | The effects of metabolic modifications of green tea catechins on their ADME/Tox properties including binding to human serum albumin // Biochemical pharmacology, 2017. str. 138-139. doi: 10.1016/j.bcp.2017.06.040

  doiwww.sciencedirect.comdoi.org

Unpublished conference paper

• Lučić, Bono; Kraljević, Antonija; Bojović, Viktor; Batista, Jadranko | The application of the QSPR methodology can help improve the prediction of protein folding rates // Ninth Indo-US Workshop on Mathematical Chemistry | Tiruchirappalli, Indija, 06.01.2025-10.01.2025

• Vujica, Lana; Lončar, Jovica; Lučić, Bono; Radman, Katarina; Mihaljević, Ivan; Bertoša, Branimir; Mesarić, Josip; Horvat, Marina; Smital, Tvrtko | First in vitro and in silico characterization of zebrafish (Danio rerio) multidrug and toxin extrusion protein 3 (Mate3/Slc47a2.1) // 12th European Zebrafish Meeting | Krakov, Poljska, 09.07.2023-13.07.2023

• Lučić, Bono | Zagreb indices: an overview and development of new variants // 8th Indo-US Workshop on Mathematical Chemistry | online, 13.09.2022-17.09.2022

• Oršolić, Davor ; Lučić, Bono ; Stepanić, Višnja ; Šmuc, Tomislav | Prediction of Drug-Kinase Binding Affinities with Focus on Conserved Protein Kinase Domain // ISMB/ECCB 2021 (29th Annual Conference) | Virtual Event, 25.07.2021-30.07.2021

• Stepanić, Višnja ; Matić, Sara ; Amić, Dragan ; Lučić, Bono ; Milenković, Dejan ; Marković ; Zoran . | In silico portrayal of quercetin metabolites. ROS in drug discovery: from target identification to redox-based therapeutics. Working Groups Meeting. COST Action BM1203, EU-ROS. // ROS in drug discovery: from target identification to redox-based therapeutics. Working Groups Meeting. COST Action BM1203, EU-ROS. | Lisabon, Portugal, 11.04.2016-14.04.2016

  eu-ros.eu

• Lučić, Bono | Optimization, interpretation, and selection of molecular descriptors in structure-property models // Math/Chem/Comp 2016, 28th MC2 Conference | Dubrovnik, Hrvatska, 20.06.2016-26.06.2016

  www.pmf.unizg.hr

• Lučić, Bono | Kritička analiza i pojednostavljivanje bioinformatičkih modela // HAZU 2012 simpozij Bioinformatika i biološka fizika | Zagreb, Hrvatska, 21.11.2012-21.11.2012

Doctoral thesis

• Lovrić, Mario | Razvoj i primjena modela za procjenu ekotoksikološkog rizika bioaktivnih kemijskih spojeva / Lučić, Bono ; Klobučar, Göran (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2021

  repozitorij.pmf.unizg.hr

• Bojović, Viktor | Novi parametri za procjenu složenosti klasifikacijskih varijabli i njihova primjena u modeliranju svojstava molekula / Lučić, Bono (mentor). | Osijek, Sveučilište Josipa Jurja Strossmayera u Osijeku / Sveučilište u Dubrovniku, 2020

• Batista, Jadranko | Izbor reprezentativnog skupa membranskih proteina poznate strukture: razvoj poboljšanih algoritama uporabom koncepta nasumičnog modela / Lučić, Bono (mentor). | Split, Prirodoslovno-matematički fakultet u Splitu, 2018

• Nadramija, Damir | Modeliranje farmakoloških svojstava molekula s pomoću ansambla linearnih i nelinearnih multivarijatnih regresijskih modela / Lučić, Bono ; Trinajstić, Nenad (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2010

• Lučić, Bono | Odnosi strukture, svojstava i aktivnosti molekula: uporaba uređeno ortogonaliziranih deskriptora / Trinajstić, Nenad (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 1997

Master's thesis (university)

• Nasteski, Dean | Istraživanje odnosa strukture i topljivosti organskih molekula u vodi / Trinajstić, Nenad (mentor); Lučić, Bono (neposredni voditelj) . | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2004

• Piližota, Teuta | Modeliranje općih svojstava strukture proteina izborom najznačajnijih varijabli / Lučić, Bono (mentor); Supek, Selma (neposredni voditelj) . | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2002

• Močilac, Pavle | Modeliranje biološke aktivnosti molekula s pomoću 1D, 2D i 3D deskriptora / Medić-Šarić, Marica (mentor); Lučić, Bono (neposredni voditelj) . | Zagreb, Farmaceutsko-biokemijski fakultet, 2002

Master of Science thesis

• Papeš Šokčević, Lidija | Poboljšani algoritam za izbor i provjeru kvalitete najboljih multivarijacijskih modela odnosa strukture i svojstava molekula / Šikić, Mile ; Lučić, Bono (mentor). | Zagreb, Fakultet elektrotehnike i računarstva, 2011

  urn.nsk.hr

Popular science article

• Svetličić, Vesna ; Lučić, Bono | 3. znanstveni skup Hrvatskih biofizičara, 2003

Other

• Lučić, Bono | Modeliranje sekundarne strukture proteina - pregled metoda i mogućnosti poboljšanja // -., 2012

Member of IUPAC Committee on Publications and Cheminformatics Data Standards (2012-2019), former name Committee for Printed and Electronic Publications (2012- 2014)

Croatian Chemical Society

Croatian Biophysical Society

Croatian Society for Theoretical and Mathematical Biology

Croatian Cultural Society "Napredak", Sarajevo