Dr. Davor Davidović
Education
- 09/2008 - today: Postgraduate study, Computer science, Faculty of Electrical Engineering and Computing, University of Zagreb
- 09/2003 - 04/2008: Faculty of Science, Department of Mathematics, University of Zagreb, M.Sc.
- 09/1999 - 05/2003: High Grammar School, Križanićeva, Zagreb
Projects
- "Scalable high-performance algorithms for future heterogeneous distributed computer systems" funded by Croatian Science Foundation, PI, 2021-2026
- Croatian-German bilateral project "Optimization of Materials Science algorithms on hybrid HPC platforms" 2019-2020, Rudjer Boskovic Institute, Faculty of Mechanics and Naval Architecture University of Zagreb and Juelich Supercomputing Centre, Germany
Awards and Achievements
- The best paper award, event 38th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO), Opatija, Croatia. Paper title: “Cloudflow - A Framework for MapReduce Pipeline Development in Biomedical Research”. Authors: Lukas Forer, Enis Afgan, Hansi Weißensteiner, Davor Davidovic, Gunter Specht, Florian Kronenberg, Sebastian Schonherr
- Silver Plaque „Josip Loncar“ for an outstanding doctoral dissertation awarded by the Faculty of Electrical Engineering and Computing, University of Zagreb, 2014
Classes
- University College Algebra, an assistant at the "Data Analytics in cloud computing"
Featured Publications
Publishing in journals indexed in Current Contents:
- Alonso-Jordá, Pedro; Davidović, Davor; Sapunar, Marin; Herrero, José R.; Quintana- Ortí, Enrique S.Efficient update of determinants for many- electron wave function overlaps. Computer physics communications, 258 (2021), 107521, 14 doi:10.1016/j.cpc.2020.107521
- Sapunar, Marin; Piteša, Tomislav; Davidović, Davor; Došlić, Nađa: Highly Efficient Algorithms for CIS Type Excited State Wave Function Overlaps. Journal of chemical theory and computation, 15 (2019), 6; 3461-3469 doi:10.1021/acs.jctc.9b00235
- Davidović, Davor; Fabregat-Traver, Diego; Höhnerbach, Markus; Di Napoli, Edoardo: Accelerating the computation of FLAPW methods on heterogeneous architectures. Concurrency and computation-practice & experience, 30 (2018), 24; e4905, 14 doi:10.1002/cpe.4905
- Aliaga, José I.; Alonso, Pedro; Badía, José M.; Chacón, Pablo; Davidović, Davor; López-Blanco, José R.; Quintana-Ortí, Enrique S.: Fast band-Krylov eigensolver for macromolecular functional motion simulation on multicore architectures and graphics processors. Journal of computational physics, 309 (2016), pp. 314-323
- Aliaga, Jose I.; Badia. José M.; Castillo, Maribel; Davidović, Davor; Mayo, Rafael; Quintana-Orti, Enrique S.: Out-of-Core Macromolecular Simulations on Multithreaded Architectures. Concurrency and Computation, 27 (2015), 6; 1540-1550
- Aliaga, José Ignacio; Bientinesi, Paolo; Davidović, Davor; Di Napoli, Eduardo; Igual Peña, Francisco D.; Quintana-Ortí, Enrique S.: Solving Dense Generalized Eigenproblems on Multi-threaded Architectures. // Applied mathematics and computation. 218 (2012) , 22; 11279-11289
- Singer, Sanja; Singer, Saša; Novaković, Vedran; Davidović, Davor; Bokulić, Krešimir; Ušćumlić, Aleksandar.: Three-Level Parallel J-Jacobi Algorithms for Hermitian Matrices. // Applied Mathematics and Computation. 218 (2012); 5704-5725
Complete list of publications on bib.irb.hr.
Publications
Journal articles
Scientific and review papers
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Tomić, D., Davidović, D., Szasz, A., Rezeli, M., Pirkić, B., Petrik, J., Bačić Vrca, V., Janđel, V., Lipić, T., Skala, K., Mesarić, J., Milković Periša, M., Šojat, Z. & Medved Rogina, B. (2021) The screening and evaluation of potential clinically significant HIV drug combinations against the SARS-CoV-2 virus. Informatics in Medicine Unlocked, 23, 100529, 7 doi:10.1016/j.imu.2021.100529.
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Alonso-Jordá, P., Davidović, D., Sapunar, M., Herrero, J. & Quintana- Ortí, E. (2021) Efficient update of determinants for many-electron wave function overlaps. Computer physics communications, 258, 107521, 14 doi:10.1016/j.cpc.2020.107521.
doifulir.irb.hr -
Sapunar, M., Piteša, T., Davidović, D. & Došlić, N. (2019) Highly Efficient Algorithms for CIS Type Excited State Wave Function Overlaps. Journal of chemical theory and computation, 15 (6), 3461-3469 doi:10.1021/acs.jctc.9b00235.
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Davidović, D., Fabregat-Traver, D., Höhnerbach, M. & Di Napoli, E. (2018) Accelerating the computation of FLAPW methods on heterogeneous architectures. Concurrency and computation-practice & experience, 30 (24), e4905, 14 doi:10.1002/cpe.4905.
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Salomoni, D., Campos, I., Gaido, L., de Lucas, J., Solagna, P., Gomes, J., Matyska, L., Fuhrman, P., Hardt, M., Donvito, G., Dutka, L., Plociennik, M., Barbera, R., Blanquer, I., Ceccanti, A., Cetinić, E., David, M., Duma, C., López-García, A., Moltó, G., Orviz, P., Sustr, Z., Viljoen, M., Aguilar, F., Alves, L., Antonacci, M., Antonelli, L., Bagnasco, S., Bonvin, A., Bruno, R., Chen, Y., Costa, A., Davidović, D., Ertl, B., Fargetta, M., Fiore, S., Gallozzi, S., Kurkcuoglu, Z., Lloret, L., Martins, J., Nuzzo, A., Nassisi, P., Palazzo, C., Pina, J., Sciacca, E., Spiga, D., Tangaro, M., Urbaniak, M., Vallero, S., Wegh, B., Zaccolo, V., Zambelli, F. & Zok, T. (2018) INDIGO-DataCloud: a Platform to Facilitate Seamless Access to E-Infrastructures. Journal of Grid Computing, 16 (3), 381-408 doi:10.1007/s10723-018-9453-3.
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Forer, L., Afgan, E., Weissenteiner, H., Davidović, D., Specht, G., Kronenberg, F. & Schoenherr, S. (2016) CLOUDFLOW - Enabling Faster Biomedical Pipelines with Mapreduce and Spark. Scalable Computing: Practice and Experience, 17 (2), 103-114 doi:10.12694/scpe.v17i2.1159.
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Aliaga, J., Alonso, P., Badía, J., Chacón, P., Davidović, D., López-Blanco, J. & Quintana-Ortí, E. (2016) Fast Band--Krylov Eigensolver for Macromolecular Functional Motion Simulation on Multicore Architectures and Graphics Processors. Journal of computational physics, 309, 314-323 doi:10.1016/j.jcp.2016.01.007.
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Skala, K., Davidović, D., Afgan, E., Sović, I. & Šojat, Z. (2015) Scalable Distributed Computing Hierarchy: Cloud, Fog and Dew Computing. Open Journal of Cloud Computing (OJCC), 2 (1), 16-24 doi:10.19210/1002.2.1.16.
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Davidović, D., Depolli, M., Lipić, T., Skala, K. & Trobec, R. (2015) Energy Efficiency of Parallel Multicore Programs. Scalable Computing: Practice and Experience, 16 (4), 437-448 doi:10.12694/scpe.v16i4.1132.
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Aliaga, J., Badia. Jose ́M., Castillo, M., Davidović, D., Mayo, R. & Quintana-Orti, E. (2015) Out-of-Core Macromolecular Simulations on Multithreaded Architectures. Concurrency and Computation, 27 (6), 1540-1550 doi:10.1002/cpe.3357.
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Skala, K., Davidović, D., Lipić, T. & Sović, I. (2014) G-Phenomena as a Base of Scalable Distributed Computing — G-Phenomena in Moore’s Law. International Journal of Internet and Distributed Systems, 2 (1), 1-4 doi:10.4236/ijids.2014.21001.
doifulir.irb.hrfile.scirp.org -
Fosin, J., Davidović, D. & Carić, T. (2013) A GPU implementation of local search operators for symmetric travelling salesman problem. Promet - Traffic & Transportation, 25 (3), 225-234 doi:10.7307/ptt.v25i3.300.
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Aliaga, J., Bientinesi, P., Davidović, D., Di Napoli, E., Igual Peña, F. & Quintana-Ortí, E. (2012) Solving Dense Generalized Eigenproblems on Multi-threaded Architectures. Applied mathematics and computation, 218 (22), 11279-11289 doi:10.1016/j.amc.2012.05.020.
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Singer, S., Singer, S., Novaković, V., Davidović, D., Bokulić, K. & Ušćumlić, A. (2012) Three-Level Parallel J-Jacobi Algorithms for Hermitian Matrices. Applied mathematics and computation, 218 (9), 5704-5725 doi:10.1016/j.amc.2011.11.067.
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Davidović, D., Skala, K., Belušić, D. & Telišman-Prtenjak, M. (2010) Grid implementation of the Weather Research and Forecasting model. Earth Science Informatics, 3 (4), 199-208 doi:10.1007/s12145-010-0060-5.
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Conference proceedings papers
Scientific conference proceedings papers
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Davidović, D. (2021) An overview of dense eigenvalue solvers for distributed memory systems. U: Skala, K. (ur.)Proceedings of the 44th International Convention on Information, Communication and Electronic Technology (MIPRO) doi:10.23919/MIPRO52101.2021.9596900.
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Tomić, D., Davidović, D., Šubić, T., Mesarić, J. & Skala, K. (2020) Improving 3D printing of garments by using HPC Cloud. U: Skala, K. (ur.)MIPRO 2020 43rd International Convention doi:10.23919/mipro48935.2020.9245130.
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Davidović, D. & Quintana-Ortí, E. (2020) Structure-Aware Calculation of Many-Electron Wave Function Overlaps on Multicore Processors. U: Wyrzykowski, R., Deelman, E., Dongarra, J. & Karczewski, K. (ur.)LNCS 12043: Parallel Processing and Applied Mathematics doi:10.1007/978-3-030-43229-4_2.
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Grubišić, I., Davidović, D., Medved Rogina, B., Depolli, M., Mohorčič, M. & Trobec, R. (2019) Enriching Heart Monitoring with Accelerometer Data. U: 2019 42nd International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO) doi:10.23919/mipro.2019.8756870.
doi Fabregat-Traver, D., Davidović, D., Höhnerbach, M. & Di Napoli, E. (2017) Hybrid CPU-GPU generation of the Hamiltonian and Overlap matrices in FLAPW methods. U: Di Napoli, E. (ur.)LNCS - High Performance Scientific Computing. (https://www.bib.irb.hr/845365).
Aliaga, J., Davidović, D., Pérez, J. & Quintana-Ortí, E. (2016) Harnessing CUDA Dynamic Parallelism for the Solution of Sparse Linear Systems. U: Joubert, G.R., Leather, H., Parsons, M., Peters, F., Sawyer, M. (ur.)Advances in Parallel Computing Volume 27: Parallel Computing: On the Road to Exascale. (https://www.bib.irb.hr/815878).
Forer, L., Afgan, E., Weißensteiner, H., Davidović, D., Specht, G., Kronenberg, F. & Schönherr, S. (2015) Cloudflow – A Framework for MapReduce Pipeline Development in Biomedical Research. U: Petar Biljanović (ur.)MIPRO 2015 38th International Convention Proceedings. (https://www.bib.irb.hr/763693).
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Forer, L., Lipić, T., Schőnherr, S., Weissensteiner, H., Davidović, D., Kronenberg, F. & Afgan, E. (2014) Delivering Bioinformatics MapReduce Applications in the Cloud. U: MIPRO 2014 37th International Convention Proceedings. (https://www.bib.irb.hr/739867).
fulir.irb.hr Aliaga, J., Davidović, D. & Quintana-Ortí, E. (2014) Out-of-core solution of eigenproblems for macromolecular simulations. U: Wyrzykowski, R., Dongarra, J., Karczewski, K., Waśniewski, J. (ur.)Parallel Processing and Applied Mathematics, Lecture Notes in Computer Science, Vol. 8384.
Afgan, E., Skala, K., Davidović, D., Lipić, T. & Sović, I. (2012) CloudMan as a tool execution framework for the cloud. U: MIPRO 2012 35th International Convention Proceedings.
Davidović, D. & Enrique S. Quintana-Ortí (2012) Applying OOC Techniques in the Reduction to Condensed Form for Very Large Symmetric Eigenproblems on GPUs. U: Rainer Stotzka, Michael Schiffers, and Yiannis Cotronis (ur.)Euromicro Conference on Parallel, Distributed and Network-based Processing. (https://www.bib.irb.hr/547460).
Davidović, D. & Skala, K. (2010) Implementacija WRF-ARW prognostičkog modela na grid infrastrukturi. U: Biljanović, P. & Skala, K. (ur.)Proceedings Vol. I. MEET&GVS 33rd International Convention MIPRO 2010.
Davidović, D. & Belušić, Danijel, Telišman Prtenjak, Maja (2009) Grid implementation of the Weather Research and Forecasting model. U: SEE-GRID-SCI User Forum.
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Singer, S., Singer, S., Hari, V., Bokulić, K., Davidović, D., Jurešić, M. & Ušćumlić, A. (2007) Advances in Speedup of the Indefinite One-Sided Block Jacobi Method. U: Simos, T., Psihoyios, G. & Tsitouras, C. (ur.)AIP Conference Proceedings Vol.936Numerical Analysis and Applied Mathematics: International Conference of Numerical Analysis and Applied Mathematics doi:10.1063/1.2790195.
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Theses
Doctoral dissertation
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Davidović, D. (2014) 'Solving Large Dense Symmetric Eigenproblem on Hybrid Architectures', doktorska disertacija, Fakultet elektrotehnike i računarstva, Zagreb. (https://www.bib.irb.hr/739853).
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Membership in professional associations / societies
- Croatian Society for Information, Communication and Electronic Technology - MIPRO, member since 2019
Workshops, visits, seminars:
- 1-28.04.2019. - Research visit to Barcelona Supercomputing centre (HPC-Europa3 program): design and implementation of look-ahead partial-pivoting LU factorization using OmpSs programming model,
- 24.01-8.02.2015. - Research visit to University Jaume I, Spain, COST Action IC1305 (Short-Term Scientific Missions program)
- 21.09-16.10.2012. - Research visit to University Jaume I, Spain, COST Action IC0805 (Short-Term Scientific Missions program)
- 02.-06. July 2012 - SCI-BUS, SHIWA, EDGI joint Summer School on Workflows and Gateways for Grids and Clouds, Budapest, Hungary
- 02/2011 - 07/2011 - Universitat Jaume I, Spain: development of the algorithms for solving eigenvalue problems on the GPU architectures, out-of-core algorithms for solving large dense symmetric problems on the GPU
- 08/2009 - ETH Zurich, short visit: Implementing algorithm for the reduction on the Hessenberg form on the graphic processors (CUDA)
- 09.-13.02.2009. Athens, Greece: "PRACE Petascale Winter School" - workshop - new technologies in the fields of the distributed and parallel computing