Visiting scientist - Zoological Institute, University of Kiel, Germany (2010-2011, Prof. Thomas C. G. Bosch)
Postdoc - Max Planck Institute for Evolutionary Biology, Plön, Germany (2008 – 2010, Diethard Tautz)
Doctorate in Genetics - University of Cologne, Institute for Genetics, Germany (2000 – 2003, Diethard Tautz)
Diploma in Biology - University of Zagreb, Faculty of Science, Croatia (1997)

HRZZ Istraživački projekti (IP-06-2016) Filostratigrafija nastanka i gubitka gena - PhyLoss

• Advanced methods and technologies in Data Science and Cooperative Systems - DATACROSS 2.0

  01.01.2024 - 31.12.2026 | 1,499,999.98 EUR

  CroRISIRB

• Disease defence in groups: the role of relatedness, risk and pathogen type - diseaseINgroups

  15.09.2021 - 14.09.2023 | 159,463.68 EUR

  CroRISIRB

• Pioneering Strategies Against Bacterial Infections - PEST-BIN

  01.01.2021 - 31.12.2024 | 4,144,986.00 EUR

  CroRISIRB

• Teorijske pretpostavke molekularne biologije - ThUMB

  01.11.2018 - 31.10.2022 | 88,150.63 EUR

  CroRIS

• Phylostratigraphy of gene gain and loss - DOK - PhyLoss

  04.10.2018 - 01.01.2023

  CroRISIRB

• Phylostratigraphy of gene gain and loss - PhyLoss

  01.03.2017 - 28.02.2021 | 132,722.81 EUR

  CroRISIRB

• Phylostratigraphic analysis of disease genes expression in the context of life cycle

  01.10.2009 - 30.09.2011 | 355,000.00 HRK

  CroRISIRB

2014    City of Zagreb Award for outstanding contribution to biological sciences
2012    Order of the Croatian Morning Star for outstanding contributions to science (awarded by the President of Croatia Dr. Ivo Josipović)
2012    State Award for Science (awarded by the President of the Croatian Parliament Josip Leko)
2010 – 2012    Ruđer Bošković Institute Award (awarded three times)
2009    Unity Through Knowledge grant
2008    Fellowship of the Max-Planck Society
2008    Young Investigator Award, "Ruđer Bošković" Institute and Shimadzu
2008    Excellence in science award, Ministry of Science, Croatia
2008    Young Investigator Award, The society of university teachers – Zagreb
2008    Adris Foundation grant
2008    “Željko Trgovčević Award”, Croatian Genetic Society
2007    Excellence in science award, Ministry of Science, Croatia
2007    Young Investigator Award, International Society for Applied Biological Sciences (ISABS)

Catholic University of Croatia - Courses in Evolutionary Biology

1. Stancik IA, Šestak MS, Ji B, Axelson-Fisk M, Franjevic D, Jers C, Domazet-Lošo T, Mijakovic I (2018) Serine/Threonine protein kinases from bacteria, archaea and eukarya share a common evolutionary origin deeply rooted in the tree of life. Journal of Molecular Biology 430(1):27-32.

2. Pozhitkov AE, Neme R, Domazet-Lošo T, Leroux BG, Soni S, Tautz D, Noble PA (2017) Tracing the dynamics of gene transcripts after organismal death. Open Biology 7,160267

3. Domazet-Lošo T, Carvunis A-R, Albà MM, Šestak MS, Bakarić R, Neme R, Tautz D (2017) No evidence for phylostratigraphic bias impacting inferences on patterns of gene emergence and evolution. Molecular Biology and Evolution 34 (4), 843-856.

4. Bosch TCG, Domazet-Lošo T, Gruender S, Holstein TW, Jékely G, Klimovich A, Miller DJ, Murillo A, Rentzsch F, Richards G, Schröder K, Technau U, Yuste R (2017) Back to the basics: Pre-Bilaterian Nervous Systems Start to Fire. Trends in Neurosciences 40 (2), 92-105.

5. Domazet-Lošo M, Domazet-Lošo T (2016) gmos: Rapid detection of genome mosaicism over short evolutionary distances. PLOS One 11(11): e0166602.

6. Xu F, Domazet-Lošo T, Fan D, Dunwell TL, Li L, Fang X, Zhang G (2016) High expression of new genes in trochophore enlightening the ontogeny and evolution of spiralians. Scientific Reports 6, 34664

7. Šestak MS, Domazet-Lošo T (2015) Phylostratigraphic profiles in zebrafish uncover chordate origins of the vertebrate brain. Molecular Biology and Evolution 32, 299–312.

8. Bosch TCG, Adamska M, Augustin R, Domazet-Loso T, Foret S, Fraune S, Funayama N, Grasis J, Hamada M, Hatta M, Hobmayer B, Kawai K, Klimovich A, Manuel M, Shinzato C, Technau U, Yum S, Miller DJ. (2014) How do environmental factors influence life cycles and development? An experimental framework for early-diverging metazoans. Bioessays. 36, 1185–1194, doi: 10.1002/bies.201400065.

9. Domazet-Lošo T, Klimovich A, Anokhin B, Anton-Erxleben F, Hamm MJ, Lange C, Bosch TCG (2014) Naturally occurring tumors in the basal metazoan Hydra. Nature Communications 5, 4222, doi: 10.1038/ncomms5222

10. Fuchs B, Wang W, Graspeuntner S, Li Y, Insua S, Herbst E-M, Dirksen P, Böhm A-M, Hemmrich G, Sommer F, Domazet-Lošo T, Klostermeier UC, Anton-Erxleben F, Rosenstiel P, Bosch TCG, Khalturin K (2014) Regulation of Polyp-to-Jellyfish Transition in Aurelia aurita. Current Biology 24, 263–273.
Evaluated by Faculty of 1000

11. Mendoza A de, Sebé-Pedrós A, Šestak MS, Matejčić M, Torruella G, Domazet-Lošo T, Ruiz-Trillo I (2013) Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages. PNAS 110, E4858–E4866.
Evaluated by Faculty of 1000

12. Šestak MS, Božičević V, Bakarić R, Dunjko V, Domazet-Lošo T (2013) Phylostratigraphic profiles reveal a deep evolutionary history of the vertebrate head sensory systems. Frontiers in Zoology 10:18

13. Tautz D, Neme R, Domazet-Lošo T (2013) Evolutionary origin of orphan genes. In: eLS. John Wiley & Sons Ltd, Chichester. http://www.els.net [DOI: 10.1002/9780470015902.a0024601]

14. McFall-Ngai M, Hadfield MG, Bosch, TCG, Carey HV, Domazet-Lošo T, Douglas AE, Dubilier N, Eberl G, Fukami T, Gilbert SF, et al. (2013) Animals in a bacterial world: a new imperative for the life sciences. PNAS 110, 3229–36.

15. Franzenburg S, Fraune S, Künzel S, Baines JF, Domazet-Lošo T, Bosch TCG (2012) MyD88-deficient Hydra reveal an ancient function of TLR signaling in sensing bacterial colonizers. PNAS 109:19374-9.
Evaluated by Faculty of 1000

16. Zhang G, Fang X, Guo X, Li L, Luo R, Xu F, Yang P, Zhang L, Wang X, Qi H,Xiong Z, Que H, Xie Y, Holland PW, Paps J, Zhu Y, Wu F, Chen Y, Wang J, Peng C,Meng J, Yang L, Liu J, Wen B, Zhang N, Huang Z, Zhu Q, Feng Y, Mount A, HedgecockD, Xu Z, Liu Y, Domazet-Lošo T, et al. (2012) The oyster genome reveals stress adaptation and complexity of shell formation. Nature. 2012 490:49-54.

17. Hemmrich G, Khalturin K, Boehm AM, Puchert M, Anton-Erxleben F, Wittlieb J, Klostermeier UC, Rosenstiel P, Oberg HH, Domazet-Lošo T, Sugimoto T, Niwa H, Bosch TC (2012) Molecular signatures of the three stem cell lineages in hydra and the emergence of stem cell function at the base of multicellularity. Molecular Biology and Evolution 29(11):3267-80.

18. Tautz D, Domazet-Lošo T (2011) The evolutionary origin of orphan genes. Nature Reviews Genetics 12(10):692-702.

19. Domazet-Lošo T, Tautz D (2010) A phylogenetically based transcriptome age index mirrors ontogenetic divergence patter. Nature 468(7325):815–818.
Nature cover story, Nature News and Views

20. Domazet-Lošo T, Tautz D (2010) Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoans. BMC Biology 8:66
Evaluated by Faculty of 1000: Hide W: 2010. F1000.com/4160956
Commentary by Ciccarelli FD (2010). The (r)evolution of cancer genetics. BMC Biol. 2010 8:74.

21. Domazet-Lošo T, Tautz D (2008) An ancient evolutionary origin of genes associated with human genetic diseases. Molecular Biology and Evolution 25(12):2699-2707.
Evaluated by Faculty of 1000: Swalla W: 2009. F1000.com/1138977, Covered by The Economist and New Scientist

22. Domazet-Lošo T, Brajković J, Tautz D (2007) A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages. Trends in Genetics 23(11):533-539.
Evaluated by Faculty of 1000: Telford M: 2007. F1000.com/1094853

23. Pozhitkov A, Noble N, Domazet-Lošo T, Nolte A, Staehler P, Beier M, Tautz D (2006) Tests of rRNA hybridization to microarrays suggest that hybridization characteristics of oligonucleotide probes for species discrimination cannot be predicted. Nucleic Acid Research 34(9):e66

24. Marais G, Domazet-Lošo T, Tautz D, Charlesworth B (2004) Correlated evolution of the synonymous and nonsynonymous sites in Drosophila. Journal of Molecular Evolution 59:771-9.

25. Domazet-Lošo T, Tautz D (2003) An evolutionary analysis of orphan genes in Drosophila. Genome Research 13:2213-9.

Original scientific paper

• Tautz, Diethard ; Neme, Rafik ; Domazet-Lošo, Tomislav | Evolutionary origin of orphan genes // eLS. | Chichester: John Wiley & Sons, 2013. str. 1-10

  onlinelibrary.wiley.com

• Tautz, Diethard ; Neme, Rafik ; Domazet-Lošo, Tomislav | Evolutionary Origin of Orphan Genes // eLS. | Chichester: John Wiley & Sons, 2013. str. 1-8

  onlinelibrary.wiley.com

Original scientific paper

• Vasari, Karla; Kovačević, Maja; Kasalo, Niko; Kazazić, Snježana; Mijakovic, Ivan; Klobučar, Göran; Franjević, Damjan; Skejo, Josip; Domazet-Lošo, Tomislav; Shelton, Brian G. et al. | A Modern Framework for Identifying Novel Environmental Legionella Species // Life, 16 (2026), 7; 1187, 16. doi: 10.3390/life16071187

  doiwww.mdpi.com

• Tušar, Anja; Koska, Sara; Futo, Momir; Kasalo, Niko; Svetličić, Ema; Čorak, Nina; Domazet-Lošo, Mirjana; Franjević, Damjan; Mijaković, Ivan; Domazet-Lošo, Tomislav | Evolutionary expression patterns in developing biofilms of uropathogenic Escherichia coli reveal embryo-like features // Evolution Letters, (2026),

• Kifer, Domagoj; Čorak, Nina; Domazet-Lošo, Mirjana; Kasalo, Niko; Lauc, Gordan; Klobučar, Göran; Domazet-Lošo, Tomislav | Contrasting Macroevolutionary Patterns in the Human N-Glycosylation Pathway // Engineering (Beijing), 57 (2026), 87-99. doi: 10.1016/j.eng.2025.06.039

  doiwww.sciencedirect.comfulir.irb.hr

• Kasalo, Niko; Domazet-Lošo, Mirjana; Domazet-Lošo, Tomislav | Outsourcing of energetically costly amino acids at the origin of animals // Nature communications, 17 (2026), 1; 1921, 16. doi: 10.1038/s41467-026-68724-6

  doifulir.irb.hrwww.nature.com

• Kasalo, Niko; Domazet-Lošo, Mirjana; Domazet-Lošo, Tomislav; | Convergence in Amino Acid Outsourcing Between Animals and Predatory Bacteria // International journal of molecular sciences, 26 (2025), 7; 3024, 15. doi: 10.3390/ijms26073024

  doiwww.mdpi.comwww.biorxiv.orgfulir.irb.hr

• Koska, Sara; Leljak-Levanić, Dunja; Malenica, Nenad; Bigović Villi, Kian; Futo, Momir; Čorak, Nina; Jagić, Mateja; Ivanić, Ariana; Tušar, Anja; Kasalo, Niko et al. | Developmental phylotranscriptomics in grapevine suggests an ancestral role of somatic embryogenesis // Communications biology, 8 (2025), 1; 265, 15. doi: 10.1038/s42003-025-07712-w

  doiwww.nature.comfulir.irb.hr

• Kasalo, Niko; Janzen, Daniel H.; Hallwachs, Winnie; Brown, Allison; Husemann, Martin; Vielsäcker, Mathias; Domazet-Lošo, Tomislav; Franjević, Damjan; Subedi, Madan; Bogić, Domagoj et al. | Integrative Taxonomy of Costa Rican Tetrigidae (Orthoptera) Reveals Eight New Species // Diversity, 17 (2025), 3; 190, 34. doi: 10.3390/d17030190

  doiwww.mdpi.comfulir.irb.hr

• Kasalo, Niko; Domazet-Lošo, Tomislav; Domazet-Lošo, Mirjana | Bacterial Amino Acid Auxotrophies Enable Energetically Costlier Proteomes // International journal of molecular sciences, 26 (2025), 5; 2285, 14. doi: 10.3390/ijms26052285

  doiwww.mdpi.comwww.biorxiv.orgfulir.irb.hr

• Jers, Carsten; Mišetić, Hrvoje; Ravikumar, Vaishnavi; Garg, Abhroop; Franjević, Damjan; Domazet-Lošo, Tomislav; Mijakovic, Ivan | Gene age and genome organization in Escherichia coli and Bacillus subtilis // Frontiers in microbiology, 16 (2025), 1512923, 13. doi: 10.3389/fmicb.2025.1512923

  doiwww.frontiersin.orgfulir.irb.hr

• Skejo, Josip; Kasalo, Niko; Patano, Romeo R.; Storozhenko, Sergey Yu.; Tumbrinck, Josef; Domazet-Lošo, Tomislav; Amoroso, Victor B.; Yap, Sheryl A.; Škorput, Jadranka | Taxonomic Revision of Pygmy Devil Genera Almacris, Ginixistra, Tegotettix, and Xistra, with Comments on Xistrella (Orthoptera: Tetrigidae) // Taxonomy, 5 (2025), 4; 60, 47. doi: 10.3390/taxonomy5040060

  doifulir.irb.hrwww.mdpi.com

• Damatac, Amor II; Koska, Sara; Ullrich, Kristian K; Domazet-Lošo, Tomislav; Klimovich, Alexander; Kaucká, Markéta | Evolutionary trends in the emergence of skeletal cell types // Evolution Letters, 9 (2025), 4; 446-460. doi: 10.1093/evlett/qraf012

  doiacademic.oup.comdoi.orgfulir.irb.hr

• Domazet-Lošo, Mirjana; Široki, Tin; Šimičević, Korina; Domazet-Lošo, Tomislav | Macroevolutionary dynamics of gene family gain and loss along multicellular eukaryotic lineages // Nature communications, 15 (2024), 1; 2663, 22. doi: 10.1038/s41467-024-47017-w

  doiwww.nature.comfulir.irb.hr

• Čorak, Nina ; Anniko, Sirli ; Daschkin-Steinborn, Christina ; Krey, Viktoria ; Koska, Sara ; Futo, Momir ; Široki, Tin ; Woichansky, Innokenty ; Opašić, Luka ; Kifer, Domagoj et al. | Pleomorphic Variants of Borreliella (syn. Borrelia) burgdorferi Express Evolutionary Distinct Transcriptomes // International journal of molecular sciences, 24 (2023), 6; 5594, 23. doi: 10.3390/ijms24065594

  doidoi.orgwww.mdpi.com

• Futo, Momir ; Široki, Tin ; Koska, Sara ; Čorak, Nina ; Tušar, Anja ; Domazet-Lošo, Mirjana ; Tomislav Domazet-Lošo | A novel time-lapse imaging method for studying developing bacterial biofilms // Scientific reports, 12 (2022), 21120, 13. doi: 10.1038/s41598-022-24431-y

  doiwww.nature.comfulir.irb.hr

• Futo, Momir; Opašić, Luka; Koska, Sara; Čorak, Nina; Široki, Tin; Ravikumar, Vaishnavi; Thorsell, Annika; Lenuzzi, Maša; Kifer, Domagoj; Domazet-Lošo, Mirjana et al. | Embryo-like features in developing Bacillus subtilis biofilms // Molecular biology and evolution, 38 (2021), 1; 31-47. doi: 10.1093/molbev/msaa217

  doiacademic.oup.comfulir.irb.hr

• Ravikumar, Vaishnavi ; Nalpas, Nicolas C. ; Anselm, Viktoria ; Krug, Karsten ; Lenuzzi, Maša ; Šestak, Martin Sebastijan ; Domazet-Lošo, Tomislav ; Mijakovic, Ivan ; Macek, Boris | In-depth analysis of Bacillus subtilis proteome identifies new ORFs and traces the evolutionary history of modified proteins // Scientific reports, 8 (2018), 1; 17246, 11. doi: 10.1038/s41598-018-35589-9

  doi

• Stancik, Ivan Andreas ; Sestak, Martin Sebastijan ; Ji, Boyang ; Axelson-Fisk, Marina ; Franjevic, Damjan ; Jers, Carsten ; Domazet- Lošo, Tomislav ; Mijakovic, Ivan | Serine/Threonine protein kinases from bacteria, archaea and eukarya share a common evolutionary origin deeply rooted in the tree of life // Journal of molecular biology, 430 (2018), 1; 27-32. doi: 10.1016/j.jmb.2017.11.004

  doiwww.sciencedirect.com

• Domazet-Lošo, Tomislav ; Carvunis, Anne-Ruxandra ; Mar Albà, M. ; Sebastijan Šestak, Martin ; Bakarić, Robert ; Neme, Rafik ; Tautz, Diethard | No Evidence for Phylostratigraphic Bias Impacting Inferences on Patterns of Gene Emergence and Evolution // Molecular biology and evolution, 34 (2017), 4; 843-856. doi: 10.1093/molbev/msw284

  doiacademic.oup.com

• Pozhitkov, Alex E. ; Neme, Rafik ; Domazet-Lošo, Tomislav ; Leroux, Brian G. ; Soni, Shivani ; Tautz, Diethard ; Noble, Peter A. | Tracing the dynamics of gene transcripts after organismal death // Open Biology, 7 (2017), 1; 160267, 25. doi: 10.1098/rsob.160267

  doirsob.royalsocietypublishing.orgdx.doi.org

• Bosch, Thomas C.G. ; Klimovich, Alexander ; Domazet-Lošo, Tomislav ; Gründer, Stefan ; Holstein, Thomas W. ; Jékely, Gáspár ; Miller, David J. ; Murillo-Rincon, Andrea P. ; Rentzsch, Fabian ; Richards, Gemma S. et al. | Back to the Basics: Cnidarians Start to Fire // Trends in neurosciences, 40 (2017), 2; 92-105. doi: 10.1016/j.tins.2016.11.005

  doiwww.sciencedirect.com

• Xu, Fei ; Domazet-Lošo, Tomislav ; Fan, Dingding ; Dunwell, Thomas L. ; Li, Li ; Fang, Xiaodong ; Zhang, Guofan ; | High expression of new genes in trochophore enlightening the ontogeny and evolution of trochozoans // Scientific reports, 6 (2016), 34664-1-34664-10. doi: 10.1038/srep34664

  doiwww.nature.com

• Domazet-Lošo, Mirjana ; Domazet-Lošo, Tomislav | gmos: Rapid Detection of Genome Mosaicism over Short Evolutionary Distances // PLoS One, 11 (2016), 11; e0166602-1-e0166602-14. doi: 10.1371/journal.pone.0166602

  doijournals.plos.org

• Šestak, Marin Sebastian ; Domazet-Lošo, Tomislav | Phylostratigraphic Profiles in Zebrafish Uncover Chordate Origins of the Vertebrate Brain // Molecular biology and evolution, 32 (2015), 2; 299-312. doi: 10.1093/molbev/msu319

  doimbe.oxfordjournals.org

• Fuchs, Björn ; Wang, Wei ; Graspeuntner, Simon ; Li, Yizhu ; Insua, Santiago ; Herbst, Eva- Maria ; Dirksen, Philipp ; Böhm, Anna-Marei ; Hemmrich, Georg ; Sommer, Felix et al. | Regulation of Polyp-to-Jellyfish Transition in Aurelia aurita // Current biology, 24 (2014), 3; 263-273. doi: 10.1016/j.cub.2013.12.003

  doiwww.sciencedirect.com

• C. G. Bosch, Thomas ; Adamska, Maja ; Augustin, René ; Domazet- Lošo, Tomislav ; Foret, Sylvain ; Fraune, Sebastian ; Funayama, Noriko ; Grasis, Juris ; Hamada, Mayuko ; Hatta, Masayuki et al. | How do environmental factors influence life cycles and development? An experimental framework for early-diverging metazoans // Bioessays, 36 (2014), 12; 1185-1194. doi: 10.1002/bies.201400065

  doionlinelibrary.wiley.com

• Domazet-Lošo, Tomislav ; Klimovich, Alexander ; Anokhin, Borsi ; Anton-Erxleben, Friederike ; Hamm, Maillin J. ; Lange, Christina ; Bosch, Thomas C.G. | Naturally occurring tumours in the basal metazoan Hydra // Nature communications, 5 (2014), 4222-4230. doi: 10.1038/ncomms5222

  doiwww.nature.com

• Šestak, Martin Sebastijan ; Božičević, Vedran ; Bakarić, Robert ; Dunjko, Vedran ; Domazet-Lošo, Tomislav | Phylostratigraphic profiles reveal a deep evolutionary history of the vertebrate head sensory systems // Frontiers in Zoology, 10 (2013), 18-18. doi: 10.1186/1742-9994-10-18

  doifrontiersinzoology.biomedcentral.com

• de Mendoza, A. ; Sebé-Pedrós, A. ; Šestak, Martin Sebastijan ; Matejčić, Marija ; Torruella, G. ; Domazet-Lošo, Tomislav ; Ruiz-Trillo, I. | Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages // Proceedings of the National Academy of Sciences of the United States of America, 110 (2013), 50; E4858-E4566. doi: 10.1073/pnas.1311818110

  doiwww.pnas.org

• Zhang G. ; Fang X. ; Guo X. ; Li, L. ; Luo, R. ; Xu, F. ; Yang, P. ; Zhang, L. ; Wang, X. ; Qi, H. et al. | The oyster genome reveals stress adaptation and complexity of shell formation // Nature, 490 (2012), 7418; 49-54. doi: 10.1038/nature11413

  doiwww.nature.com

• Hemmrich, G. ; Khalturin, K. ; Boehm, A.M. ; Puchert, M. ; Anton-Erxleben, F. ; Wittlieb, J. ; Klostermeier, U.C. ; Rosenstiel, P. ; Oberg H.H. ; Domazet-Lošo, Tomislav et al. | Molecular signatures of the three stem cell lineages in hydra and the emergence of stem cell function at the base of multicellularity // Molecular biology and evolution, 29 (2012), 11; 3267-3280. doi: 10.1093/molbev/mss134

  doimbe.oxfordjournals.org

• Franzenburg, S. ; Fraune, S. ; Künzel, S. ; Baines, J.F. ; Domazet-Lošo, Tomislav ; Bosch, T.C.G. | MyD88-deficient Hydra reveal an ancient function of TLR signaling in sensingbacterial colonizers. // Proceedings of the National Academy of Sciences of the United States of America, 109 (2012), 47; 19374-19379. doi: 10.1073/pnas.1213110109

  doiwww.pnas.orgdoi.org

• Diethard, Tautz ; Domazet-Lošo, Tomislav | The evolutionary origin of orphan genes // Nature reviews genetics, 12 (2011), 10; 692-702. doi: 10.1038/nrg3053

  doiwww.nature.com

• Domazet-Lošo, Tomislav ; Tautz Diethard | Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa // BMC biology, 8 (2010), 66-66. doi: 10.1186/1741-7007-8-66

  doiwww.biomedcentral.com

• Domazet-Lošo, Tomislav ; Tautz, D. | An Ancient Evolutionary Origin of Genes Associated with Human Genetic Diseases // Molecular biology and evolution, 25 (2008), 12; 2699-2707. doi: 10.1093/molbev/msn214

  doidoi.orgmbe.oxfordjournals.org

• Domazet-Lošo, Tomislav ; Brajković, Josip ; Tautz, Diethard | A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages // Trends in genetics, 23 (2007), 11; 533-539-x

  www.sciencedirect.com

• Pozhitkov, Alex ; Noble, Peter ; Domazet-Lošo, Tomislav ; Nolte, Arne ; Staehler, Peer ; Beier, Markus ; Tautz, Diethard | Tests of rRNA hybridization to microarrays suggest that hybridization characteristics of oligonucleotide probes for species discrimination cannot be predicted // Nucleic acids research, 34 (2006), 9; e66 online-x

  nar.oxfordjournals.org

• Marais, Gabriel ; Domazet-Lošo, Tomislav ; Tautz, Diethard ; Charlesworth, Brian | Correlated evolution of synonymous and nonsynonymous sites in Drosophila // Journal of molecular evolution, 59 (2004), 771-779-x

• Domazet-Lošo, Tomislav ; Diethard, Tautz | An Evolutionary Analysis of Orphan Genes in Drosophila // Genome research, 13 (2003), 2213-2219-x

Letter (scientific)

• Domazet-Lošo, Tomislav ; Tautz, Diethard | A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns // Nature, 468 (2010), 7325; 815-818. doi: 10.1038/nature09632

  doiwww.nature.comdoi.org

Review article (scientific)

• Domazet-Lošo, Tomislav | mRNA Vaccines: Why Is the Biology of Retroposition Ignored? // Genes, 13 (2022), 5; 719, 24. doi: 10.3390/genes13050719

  doiwww.mdpi.comdoi.orgfulir.irb.hr

• McFall-Ngai, Margaret ; Hadfield, Michael G. ; Bosch, Thomas C.G. ; Carey, Hannah V. ; Domazet-Lošo, Tomislav ; ... ; Wernegreen, Jennifer J. | Animals in a bacterial world, a new imperative for the life sciences // Proceedings of the National Academy of Sciences of the United States of America, 110 (2013), 9; 3229-3236. doi: 10.1073/pnas.1218525110

  doiwww.pnas.org

Conference abstract

• Leljak-Levanić, Dunja; Koska, Sara; Malenica, Nenad; Bigović, Villi Kian; Futo, Momir; Jagić, Mateja; Čorak, Nina; Tušar, Anja; Kasalo, Niko; Domazet-Lošo, Mirjana et al. | Somatska embriogeneza: evolucijski odjek primordijalnog reproduktivnog programa biljaka // Zbornik sažetaka 15. hrvatskog biološkog kongresa / Bosak, Sunčica; Gračan, Romana; Korač, Petra (ur.). | Zagreb: Hrvatsko biološko društvo, 2025. str. 348-349

  www.hbd-sbc.hr

• Kifer, Domagoj ; Ledinski, Maja ; Čorak, Nina ; Domazet-Lošo, Mirjana ; Lauc, Gordan ; Klobučar, Göran ; Domazet-Lošo, Tomislav | Evolutionary origins of the N-glycosylation from the perspective of Homo sapiens genome // Book of Abstracts of the Congress of the Croatian Society of Biochemistry and Molecular Biology HDBMB22: From Science to Knowledge. | Zagreb: Hrvatsko društvo za biokemiju i molekularnu biologiju (HDBMB), 2022. str. 49-49

  congress2022.hdbmb.hr

• Čorak, Nina ; Daschkin, Christina ; Krey, Viktoria ; Koska, Sara ; Futo, Momir ; Široki, Tin ; Anniko, Sirli ; Woichansky, Innokenty ; Opašić, Luka ; Kifer, Domagoj et al. | Transkripcijske značajke pleomorfnih varijanti bakterije Borrelia burgdorferi. | 2021. str. 87-88

• Koska, Sara ; Futo, Momir ; Opašić, Luka ; Čorak, Nina ; Široki, Tin ; Ravikumar, Vaishnavi ; Thorsell, Annika ; Kifer, Domagoj ; Domazet-Lošo, Mirjana ; Vlahoviček, Kristian et al. | Korelacija filogenije i ontogenije kod biofilmova vrste Bacillus subtilis. | 2020. str. 37-37

• Domazet-Lošo, Tomislav | Use of orphan genes and protein evolution are shaped by Drosophila development // Second Congress of Croatian Geneticists with international participation - Book of Abstracts. | Zagreb: Hrvatsko genetičko društvo, 2005. str. 43-x

• Domazet-Lošo, Tomislav ; Diethard, Tautz | An evolutionary analysis of orphan genes in Drosophila // Book of abstracts, 9th Congress of European Society for Evolutionary Biology. | Leeds, 2003. str. 3.5-x

• Domazet-Lošo, Tomislav ; Tautz, Diethard | An evolutionary analysis of orphan genes in Drosophila // 8. Hrvatski biološki kongres - Zbornik sažetaka. | Zagreb: Hrvatsko biološko društvo, 2003. str. 23-x

Original scientific paper

• Ribarić, Antea; Domazet-Lošo, Tomislav; Domazet-Lošo, Mirjana | Gene Age Prediction is Robust to False Homology // 2025 MIPRO 48th ICT and Electronics Convention / Car, Željka; Babić, Snježana; Čićin Šain, Marina (ur.). | Piscataway (NJ): IEEE, 2025. str. 1251-1256. doi: 10.1109/MIPRO65660.2025.11131721

  doi

• Široki, Tin ; Koska, Sara ; Čorak, Nina ; Futo, Momir ; Domazet-Lošo, Tomislav ; Domazet-Lošo, Mirjana | Correspondence analysis applied to large scale Evo-Devo data // 42th International Convention on Information, Communication and Electronic Technology (MIPRO) - proceedings. | Rijeka: Hrvatska udruga za informacijsku i komunikacijsku tehnologiju, elektroniku i mikroelektroniku - MIPRO, 2019. str. 279-282

  ieeexplore.ieee.orgwww.mipro.hr

Conference abstract

• Futo, Momir ; Opašić, Luka ; Koska, Sara ; Čorak, Nina ; Široki, Tin ; Ravikumar, Vaishnavi ; Thorsell, Annika ; Kifer, Domagoj ; Domazet­ - Lošo, Mirjana ; Vlahoviček, Kristian et al. | Phylogeny-Ontogeny Correlations: Lessons From Microbial Biofilms // FEBS Open Bio, 2021. str. 12-12

  febs.onlinelibrary.wiley.com

• Kifer, Domagoj ; Ledinski, Maja ; Domazet-Lošo, Mirjana ; Lauc, Gordan ; Klobučar, Göran ; Domazet-Lošo, Tomislav | Macroevolutionary reconstruction of glycosylation from the perspective of homo sapiens genome // Glycoconjugate journal, 36, 2019. str. 331-332

  link.springer.com

Unpublished conference paper

• Leljak-Levanić D, Koska S, Malenica N, Bigović Villi K, Futo M, Jagić M, Čorak N, Tušar A, Kasalo N, Domazet-Lošo M, Vlahoviček K, Domazet-Lošo T | SOMATIC EMBRYOGENESIS IS AN ANCESTRAL REPRODUCTIVE STRATEGY IN PLANTS // Plant Biology Europe | Budimpešta, Mađarska, 25.06.2025-28.06.2025

  pbe2025-budapest.org

• Kifer, Domagoj ; Ledinski, Maja ; Čorak, Nina ; Domazet-Lošo, Mirjana ; Lauc, Gordan ; Klobučar, Göran ; Domazet-Lošo, Tomislav | Evolutionary origins of the N-glycosylation from the perspective of Homo sapiens genome // 4TH MEETING OF THE HUMAN GLYCOME PROJECT | Split, Hrvatska, 04.06.2023-07.06.2023

Doctoral thesis

• Čorak, Nina | Differential expression and evolutionary signatures of Borrelia burgdorferi morphotypes / Domazet-Lošo, Tomislav (mentor). | Zagreb, 2022

  fulir.irb.hr

• Koska, Sara | Phylogeny-ontogeny correspondence in Bacillus subtilis biofilms / Domazet-Lošo, Tomislav (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2022

  fulir.irb.hrrepozitorij.pmf.unizg.hr

• Šestak, Martin Sebastijan | Phylostratigraphic analysis of the macroevolutionary history of organ systems in animals / Domazet-Lošo, Tomislav (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2013

• Domazet-Lošo, Tomislav | Evolution of orphan genes in Drosophila / Tautz, Diethard (mentor). | Köln, 2003

Master's thesis (university)

• Šarolić, Jana | Macroevolutionary footprints of convergent adaptations to freshwater habitats in fish genomes / Domazet Lošo, Tomislav; Franjević, Damjan (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2026

• Pešut, Mate | Utjecaj prisutnosti specifičnih i jasnih informacija o riziku na rizično ponašanje: uloga spola / Domazet-Lošo, Tomislav ; Glavaš, Dragan (mentor). | Zagreb, Hrvatsko katoličko sveučilište, 2022

• Zec, Mate | Phylostratigraphic Analysis of Eusocial Hymenoptera / Domazet-Lošo, Tomislav; Franjević, Damjan (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2013

• Jasek, Sanja | Evolution of Oxidative Phosphorylation / Domazet-Lošo, Tomislav (mentor); Brčić-Kostić, Krunoslav ; Franjević, Damjan (neposredni voditelj) . | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2012

Ostali članci/prilozi

• Koska, Sara; Leljak-Levanić, Dunja; Malenica, Nenad; Bigović Villi, Kian; Futo, Momir; Čorak, Nina; Jagić, Mateja; Ivanić, Ariana; Tušar, Anja; Kasalo, Niko et al. | Developmental phylotranscriptomics in grapevine suggests an ancestral role of somatic embryogenesis, 8, 1: Springer Science and Business Media LLC, 2025. 265. doi: 10.1038/s42003-025-07712-w

  doiwww.nature.comwww.nature.com