PhD - Electrical engineering, 1994, Faculty of Electrical Engineering, University of Zagreb.

MSc - Electrical Engineering 1991, Faculty of Electrical Engineering, University of Zagreb.

BSc - Electrical Engineering 1986, Faculty of Electrical Engineering, University of Zagreb.

• SUSA - e Sustainable Healthcare with Digital Health Data Competence (DIGITAL EU)

• Ai4Health.Cro - Artificial Intelligence for Smart Healthcare and Medicine (EDIH) - DIGITAL EU)

• MAESTRA - Learning from Massive, Incompletely Annotated, and Structured Data, FP7 FET project, WP leader

• MultiPlex - FP7 FET project, RBI group leader

• FOC-II - FP7 FET project, RBI group leader
• eLICO - FP7 STREP, WP leader
• HEARTFAID - FP7 STREP, collaborator

• Enhancing capacities for technology transfer, company building and innovations in the field of ICT - CapTTict

  01.01.2024 - 30.06.2026 | 2,266,634.00 EUR

  CroRISIRB

• Advanced methods and technologies in Data Science and Cooperative Systems - DATACROSS 2.0

  01.01.2024 - 31.12.2026 | 1,499,999.98 EUR

  CroRISIRB

• Artificial Intelligence for Smart Healthcare and Medicine - AI4Health.Cro

  01.04.2023 - 31.03.2026 | 2,965,065.23 EUR

  CroRISIRB

• Inteligentni računalni procesi za predikciju, otkrivanje i razumijevanje u genomici i farmakogenomici - AIGEN

  01.11.2019 - 30.04.2023 | 207,923.55 EUR

  CroRISIRB

• National Initiatives for Open Science in Europe - NI4OS-Europe

  01.09.2019 - 28.02.2023 | 5,599,475.00 EUR

  CroRISIRB

• BIO-ECOnomy Research Driven Innovation - BIOECO-R.D.I.

  01.01.2018 - 31.12.2020 | 1,358,801.35 EUR

  CroRISIRB

• Bioprospecting of the Adriatic Sea

  01.11.2017 - 01.12.2023 | 37,775,735.86 HRK

  CroRISIRB

• Advanced methods and technologies in Data Science and Cooperative Systems - DATACROSS

  01.11.2017 - 30.11.2023 | 37,476,877.38 HRK

  CroRISIRB

• Scientific Center of Excellence for Bioprospecting of the sea - BioProCro

  06.11.2015 - 05.11.2020 | 515,437.16 HRK

  CroRISIRB

• Learning from Massive, Incompletely annotated, and Structured Data - MAESTRA

  01.02.2014 - 31.01.2017 | 2,293,310.00 EUR

  CroRISIRB

• Foundational Research on MULTIlevel comPLEX networks and systems - MULTIPLEX

  01.11.2012 - 31.10.2016 | 7,861,905.00 EUR

  CroRISIRB

• e-Laboratory for Interdisciplinary Collaborative Research in Data Mining and Data-Intensive Sciences - e-LICO

  01.02.2009 - 31.01.2012 | 4,468,853.00 EUR

  CroRISIRB

• Razvoj modula za elektroničku razmjenu dokumenata i informacija u uredskom poslovanju kao nadogradnja poslovnom rješenju CENTRIX

  01.01.2009 - 01.01.2011 | 270,540.00 HRK

  CroRISIRB

• Machine learning of predictive models in computational biology

  01.01.2007 - 01.01.2009 | 0.00 EUR

  CroRISIRB

Machine Learning (Division of Mathematics, Faculty of Science,  University of Zagreb) 2010-2021

1.1  Matija Piškorec, Nino Antulov-Fantulin, Petra Kralj Novak, Igor Mozetič, Miha Grčar, Irena Vodenska, T. Šmuc (2014), Cohesiveness in Financial News and its Relation to Market Volatility, Scientific Reports,http://dx.doi.org/10.1038/srep05038; 

1.2 N. Antulov-Fantulin, T. Šmuc, A. Lančić, H. Štefančić, M. Šikić, (2015) Identification of patient zero in static and temporal networks - robustness and limitations, Phys. Rev. Lett., 114(24), 248701.; 

1.3 M. Mihelčić, N. Lavrač, S. Džeroski, T. Šmuc, (2017) A framework for redescription set construction, Expert Systems With Applications 68 196–215. 

1.4 M. Mihelčić, S. Džeroski, N. Lavrač, T. Šmuc, (2017) Redescription mining augmented with random forest of predictive clustering trees, Journal of Intelligent Information Systems, 1-34. doi:10.1007/s10844-017-0448-5.

1.5 M. Mihelčić, G. Šimić, M. L. Babić, N. Lavrač, S. Džeroski, T. Šmuc (2017) Using redescription mining to relate clinical and biological characteristics of cognitively impaired and Alzheimer’s disease patients. PLOS ONE 12(10).

1.6   M. Mihelčić, T. Šmuc, (2018), Targeted and contextual redescription set exploration,  Machine Learning,https://doi.org/10.1007/s10994-018-5738-9

1.7   V., Vidulin, T. Šmuc, S. Džeroski, F. Supek, The evolutionary signal in metagenome phyletic profiles predicts many gene functions, Microbiome  (2018) 6:129,          https://doi.org/10.1186/s40168-018-0506-4

1.8 V Vidulin, T Šmuc, F Supek, (2016). Extensive Complementarity between Gene Function Prediction Methods, Bioinformatics, 1367-4803.

1.9 M Brbić, M Piškorec, V Vidulin, A Kriško, T Šmuc and F Supek, (2016), The landscape of microbial phenotypic traits and associated genes, Nucleic acids research (0305-1048).

1.10 P. Radivojac et al., (2013) A large-scale evaluation of computational protein function prediction; Nature Methods 10(3):221.

1.11Škunca N, Bošnjak M,  Kriško A, Panov P, Džeroski  S, Šmuc T, Supek F. (2012). Phyletic Profiling With Cliques of Orthologs Is Enhanced by Signatures of Paralogy  Relationships, PLoS Computational Biology.

1.12Supek F,  Bošnjak M, Škunca N, Šmuc T, (2011), REVIGO summarizes and visualizes long lists  of Gene Ontology  terms ,  PloS One,  (7):e21800. doi:10.1371/journal.pone. 

Conference proceedings

• Proceedings of the ECML-PKDD 2011 Workshop on Discovery Challenge / Šmuc, Tomislav ; Antulov-Fantulin, Nino ; Morzy, Mikołaj (ur.). Zagreb: Institut Ruđer Bošković, 2011

  ceur-ws.org

Book of abstracts

• Abstract book of the 9th International Workshop on Data Science / Lončarić, Sven ; Šmuc, Tomislav (ur.). Zagreb: Sveučilište u Zagrebu Fakultet elektrotehnike i računarstva, 2025

  drive.google.com

• Abstract book of the 8th International Workshop on Data Science / Lončarić, Sven; Šmuc, Tomislav (ur.). Zagreb: Fakultet elektrotehnike i računarstva Sveučilišta u Zagrebu, 2023

  drive.google.com

Original scientific paper

• Mihelčić, Matej ; Šmuc, Tomislav | Rules, Subgroups and Redescriptions as Features in Classification Tasks // Machine Learning and Principles and Practice of Knowledge Discovery in Databases. International Workshops of ECML PKDD 2022.. | Cham: Springer, 2023. str. 248-260 . doi: 10.1007/978-3-031-23618-1_17

  doilink.springer.com

• Mihelčić, Matej ; Džeroski, Sašo ; Šmuc, Tomislav | Extending Redescription Mining to Multiple Views // 21st International Conference, DS 2018, Limassol, Cyprus, October 29–31, 2018, Proceedings. | Cham: Springer, 2018. str. 292-307 . doi: 10.1007/978-3-030-01771-2_19

  doilink.springer.com

• Supek, Fran ; Šmuc, Tomislav | Distance Measures and Machine Learning Approaches for Codon Usage Analyses // Codon Evolution - Mechanisms and Models. | Oxford: Oxford University Press, 2011. str. 229-244

  www.codonbook.comukcatalogue.oup.com

• Trontl, Krešimir ; Šmuc, Tomislav ; Pevec, Dubravko | Learning Support Vector Regression Models for Fast Radiation Dose Rate // Machine Learning Research Progress. | New York (NY): Nova Science Publishers, 2010. str. 427-462

• Kašner, M. ; Jelaković, Bojan ; Laganović, Mario ; Željković, T. ; Kuzmanić, Duško ; Boršo, Gordana ; Šmuc, Tomislav ; Gamberger, Dragan ; Rončević, P. | Serum uric-acid is related to metabolic disturbance and associated to serum aldosterone in essential hypertension // Frontiers in Coronary Artery Disease : Proceedings of the 5th International Congress on Coronary Artery Disease. | Bologna: Monduzzi Editore, 2003. str. 457-460

Professional paper

• Mihelčić, Matej ; Bošnjak Matko ; Antulov-Fantulin Nino ; Šmuc Tomislav | Constructing Recommender Systems in RapidMiner // RapidMiner. | New York (NY): Chapman and Hall/CRC, 2013. str. 119-143 . doi: 10.1201/b16023

  doi

• Laganović, Mario ; Jelaković, Bojan ; Kuzmanić, Dušan ; Boršo, Gordana ; Rončević, Tomislav ; Vdović, M. ; Željković, T. ; Kašner, M. ; Šmuc, Tomislav ; Gamberger, Dragan | Low birth does not influence blood pressure through reduced kidney volume // Frontiers in Coronary Artery Disease : Proceedings of the 5th International Congress on Coronary Artery Disease. | Bologna: Monduzzi Editore, 2003. str. 461-468

Original scientific paper

• Oršolić, Davor; Šmuc, Tomislav | Dynamic applicability domain (dAD): compound–target binding affinity estimates with local conformal prediction // Bioinformatics, 39 (2023), 8; btad465, 12. doi: 10.1093/bioinformatics/btad465

  doiacademic.oup.comfulir.irb.hrfulir.irb.hr

• Fernandes, Sofia ; Fanaee‑T, Hadi ; Gama, João ; Tišljarić, Leo ; Šmuc, Tomislav | WINTENDED: WINdowed TENsor decomposition for Densification Event Detection in time-evolving networks // Machine learning, 112 (2023), 2; 459-481. doi: 10.1007/s10994-021-05979-8

  doilink.springer.com

• Mihelčić, Matej ; Šmuc, Tomislav | Approaches for Multi-View Redescription Mining // IEEE access, 9 (2021), 19356-19378. doi: 10.1109/access.2021.3054245

  doiieeexplore.ieee.orgieeexplore.ieee.orgfulir.irb.hr

• Jović, Ozren ; Šmuc, Tomislav | Search for Novel Lead Inhibitors of Yeast Cytochrome bc1, from Drugbank and COCONUT // Molecules, 26 (2021), 14; 4323, 21. doi: 10.3390/molecules26144323

  doiwww.mdpi.comdoi.orgfulir.irb.hrfulir.irb.hr

• Vlainić, Josipa ; Jović, Ozren ; Kosalec, Ivan ; Vugrek, Oliver ; Čoz-Rakovac, Rozelindra ; Šmuc, Tomislav | In Vitro Confirmation of Siramesine as a Novel Antifungal Agent with In Silico Lead Proposals of Structurally Related Antifungals // Molecules, 26 (2021), 12; 3504, 17. doi: 10.3390/molecules26123504

  doiwww.mdpi.comfulir.irb.hr

• Matulja, Dario ; Grbčić, Petra ; Bojanić, Krunoslav ; Topić-Popović, Natalija ; Čož-Rakovac, Rozelindra ; Laclef, Sylvain ; Šmuc, Tomislav ; Jović, Ozren ; Marković, Dean ; Pavelić Kraljević, Sandra | Chemical Evaluation, Antioxidant, Antiproliferative, Anti-Inflammatory and Antibacterial Activities of Organic Extract and Semi-Purified Fractions of the Adriatic Sea Fan, Eunicella cavolini // Molecules, 26 (2021), 19; 5751, 21. doi: 10.3390/molecules26195751

  doiwww.mdpi.comfulir.irb.hrdoi.org

• Cichońska, Anna ; Ravikumar, Balaguru ; Allaway, Robert J. ; Wan, Fangping ; Park, Sungjoon ; Isayev, Olexandr ; Li, Shuya ; Mason, Michael ; Lamb, Andrew ; Tanoli, Ziaurrehman et al. | Crowdsourced mapping of unexplored target space of kinase inhibitors // Nature communications, 12 (2021), 3307, 18. doi: 10.1038/s41467-021-23165-1

  doiwww.nature.comdoi.orgfulir.irb.hr

• Oršolić, Davor ; Pehar, Vesna ; Šmuc, Tomislav ; Stepanić, Višnja | Comprehensive machine learning based study of the chemical space of herbicides // Scientific reports, 11 (2021), 11479, 12. doi: 10.1038/s41598-021-90690-w

  doiwww.nature.comdoi.orgfulir.irb.hr

• Kulikovskikh, Ilona ; Lipić, Tomislav ; Šmuc, Tomislav | From Knowledge Transmission to Knowledge Construction: A Step towards Human-Like Active Learning // Entropy (Basel. Online), 22 (2020), 8; 906, 11. doi: 10.3390/e22080906

  doiwww.mdpi.comfulir.irb.hr

• Jović, Ozren ; Šmuc, Tomislav | Combined Machine Learning and Molecular Modelling Workflow for the Recognition of Potentially Novel Fungicides // Molecules, 25 (2020), 9; 2198, 24. doi: 10.3390/molecules25092198

  doiwww.mdpi.comfulir.irb.hr

• Piškorec, Matija ; Šmuc, Tomislav ; Šikić, Mile | Disentangling Sources of Influence in Online Social Networks // IEEE access, 7 (2019), 131692-131704. doi: 10.1109/access.2019.2940762

  doiieeexplore.ieee.orgdoi.orgfulir.irb.hr

• Kulikovskikh, Ilona ; Prokhorov, Sergej ; Lipić, Tomislav ; Legović, Tarzan ; Šmuc, Tomislav | BioGD: Bio-inspired robust gradient descent // PLoS One, 14 (2019), 7; e0219004, 19. doi: 10.1371/journal.pone.0219004

  doijournals.plos.org

• Mihelčić, Matej ; Šmuc, Tomislav ; Supek, Fran | Patterns of diverse gene functions in genomic neighborhoods predict gene function and phenotype // Scientific reports, 9 (2019), 1; 19537, 16. doi: 10.1038/s41598-019-55984-0

  doiwww.biorxiv.orgwww.nature.com

• Zhou, Naihui ; Jiang, Yuxiang ; Bergquist, Timothy R. ; Lee, Alexandra J. ; Kacsoh, Balint Z. ; Crocker, Alex W. ; Lewis, Kimberley A. ; Georghiou, George ; Nguyen, Huy N. ; Hamid, Md Nafiz et al. | The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens // Genome biology, 20 (2019), 1; 244, 23. doi: 10.1186/s13059-019-1835-8

  doigenomebiology.biomedcentral.com

• Mihelčić, Matej ; Šmuc, Tomislav | Targeted and contextual redescription set exploration // Machine learning, 107 (2018), 11; 1809-1846. doi: 10.1007/s10994-018-5738-9

  doilink.springer.com

• Vidulin, Vedrana ; Šmuc, Tomislav ; Džeroski, Sašo ; Supek, Fran | The evolutionary signal in metagenome phyletic profiles predicts many gene functions // Microbiome, 6 (2018), 1; 129, 21. doi: 10.1186/s40168-018-0506-4

  doimicrobiomejournal.biomedcentral.comlink.springer.com

• Mihelčić, Matej ; Džeroski, Sašo ; Lavrač, Nada ; Šmuc, Tomislav | Redescription mining augmented with random forest of multi-target predictive clustering trees // Journal of intelligent information systems, 50 (2018), 1; 63-96. doi: 10.1007/s10844-017-0448-5

  doilink.springer.com

• (Alzheimer’s Disease Neuroimaging Initiative) Mihelčić, Matej ; Šimić, Goran ; Babić Leko, Mirjana ; Lavrač, Nada ; Džeroski, Sašo ; Šmuc, Tomislav | Using redescription mining to relate clinical and biological characteristics of cognitively impaired and Alzheimer's disease patients // PLoS One, 12 (2017), 10; 1-35. doi: 10.1371/journal.pone.0187364

  doijournals.plos.org

• Mihelčić, Matej ; Džeroski, Sašo ; Lavrač, Nada ; Šmuc, Tomislav | A framework for redescription set construction // Expert systems with applications, 68 (2017), 196-215. doi: 10.1016/j.eswa.2016.10.012

  doiwww.sciencedirect.com

• Brbić, Maria ; Piškorec, Matija ; Vidulin, Vedrana ; Kriško, Anita ; Šmuc, Tomislav ; Supek, Fran | The landscape of microbial phenotypic traits and associated genes // Nucleic acids research, 44 (2016), 21; 10074-10090. doi: 10.1093/nar/gkw964

  doinar.oxfordjournals.orgdoi.org

• Vidulin, Vedrana ; Šmuc, Tomislav ; Supek, Fran | Extensive Complementarity between Gene Function Prediction Methods // Bioinformatics, 32 (2016), 23; 3645-3653. doi: 10.1093/bioinformatics/btw532

  doibioinformatics.oxfordjournals.org

• Antulov-Fantulin, Nino ; Lančić, Alen ; Šmuc, Tomislav ; Štefančić, Hrvoje ; Šikić, Mile | Identification of Patient Zero in Static and Temporal Networks : Robustness and Limitations // Physical review letters, 114 (2015), 248701-1-248701-5. doi: 10.1103/PhysRevLett.114.248701

  doijournals.aps.orgdx.doi.org

• Piškorec, Matija ; Antulov-Fantulin, Nino ; Kralj Novak, Petra ; Mozetič, Igor ; Grčar, Miha ; Vodenska, Irena ; Šmuc Tomislav | Cohesiveness in Financial News and its Relation to Market Volatility // Scientific reports, 4 (2014), 5038-1-5038-8. doi: 10.1038/srep05038

  doiwww.nature.com

• Levatić, Jurica ; Ćurak, Jasna ; Kralj, Marijeta ; Šmuc, Tomislav ; Osmak, Maja ; Supek, Fran | Accurate Models for P-gp Drug Recognition Induced from a Cancer Cell Line Cytotoxicity Screen // Journal of medicinal chemistry, 56 (2013), 14; 5691-5708. doi: 10.1021/jm400328s

  doipubs.acs.org

• Levatić, Jurica ; Džeroski, Sašo ; Supek, Fran ; Šmuc, Tomislav. | Semi-Supervised Learning for Quantitative Structure- Activity Modeling // Informatica (Ljubljana), 37 (2013), 2; 173-179

  www.informatica.sifulir.irb.hr

• Radivojac, Predrag ; ... ; Škunca, Nives ; Supek, Fran ; Bošnjak, Matko ; ... ; Šmuc, Tomislav ; ... ; Friedberg, Iddo | A large-scale evaluation of computational protein function prediction // Nature methods, 10 (2013), 3; 221-227. doi: 10.1038/nmeth.2340

  doiwww.nature.com

• Gamberger, Dragan ; Šmuc, Tomislav | Good Governance Problems and Recent Financial Crises in Some EU Countries // Economics : The Open Access Open-Assessment E-Journal, 7 (2013), 201341, 21. doi: 10.5018/economics-ejournal.ja.2013-41

  doiwww.economics-ejournal.orgfulir.irb.hr

• Šimpraga, Miljenko ; Šmuc, Tomislav ; Matanović, Krešimir ; Radin, Lada ; Shek-Vugrovečki, Ana ; Ljubičić, Iva ; Vojta, Aleksandar | Reference intervals for organically raised sheep: Effects of breed, location and season on hematological and biochemical parameters // Small ruminant research, 112 (2013), 1-3; 1-6. doi: 10.1016/j.smallrumres.2012.11.032

  doidx.doi.orgwww.sciencedirect.com

• Ester, Katja ; Supek, Fran ; Majsec, Kristina ; Marjanović, Marko ; Lembo, David ; Donalisio, Manuela ; Šmuc, Tomislav ; Jarak, Ivana ; Karminski-Zamola, Grace ; Kralj, Marijeta | Putative mechanisms of antitumor activity of cyano-substituted heteroaryles in HeLa cells // Investigational new drugs, 30 (2012), 2; 450-467. doi: 10.1007/s10637-010-9571-7

  doiwww.springerlink.com

• Škunca, Nives ; Bošnjak, Matko ; Kriško, Anita ; Panov, Panče ; Džeroski, Sašo ; Šmuc, Tomislav ; Supek, Fran | Phyletic Profiling With Cliques of Orthologs is Enhanced by Signatures of Paralogy Relationships // Plos computational biology, 9 (2012), 1; e100285, 14. doi: 10.1371/journal.pcbi.1002852

  doigorbi.irb.hrjournals.plos.orgfulir.irb.hr

• Čož-Rakovac, Rozelinda ; Lisičić, Duje ; Šmuc, Tomislav ; Topić Popović, Natalija ; Strunjak-Perović, Ivančica ; Jadan, Margita ; Tadić, Zoran ; Jug Dujaković, Jurica | Classification Modelling of Physiological Stages in Captive Balkan Whip Snakes Using Blood Biochemistry Parameters // Journal of herpetology, 45 (2011), 4; 525-529

  www.bioone.orgdx.doi.org

• Rios-Morales, Ruth ; Gamberger, Dragan ; Jenkins, Ian ; Šmuc, Tomislav ; | Modelling investment in the tourism industry using the World Bank's good governance indicators // Journal of modelling in management, 6 (2011), 3; 279-296. doi: 10.1108/17465661111183694

  doiwww.emeraldinsight.com

• Supek, Fran ; Bošnjak, Matko ; Škunca, Nives ; Šmuc, Tomislav | REVIGO summarizes and visualizes long lists of Gene Ontology terms // PLoS One, 6 (2011), 7; e21800-e21800. doi: 10.1371/journal.pone.0021800

  doiwww.plosone.orgfulir.irb.hr

• Smole, Zlatko ; Nikolić, Nela ; Supek, Fran ; Šmuc, Tomislav ; Sbalzarini, Ivo ; Kriško, Anita | Proteome sequence features carry signatures of the environmental niche of prokaryotes // Bmc evolutionary biology, 11 (2011), 26, 10. doi: 10.1186/1471-2148-11-26

  doiwww.ncbi.nlm.nih.govwww.biomedcentral.comdoi.org

• Supek, Fran ; Šumanovac Ramljak, Tatjana ; Marjanović, Marko ; Buljubašić, Maja ; Kragol, Goran ; Ilić, Nataša ; Šmuc, Tomislav ; Zahradka, Davor ; Mlinarić-Majerski, Kata ; Kralj, Marijeta | Could LogP be a principal determinant of biological activity in 18-crown-6 ethers? Synthesis of biologically active adamantane-substituted diaza-crowns // European journal of medicinal chemistry, 46 (2011), 8; 3444-3454. doi: 10.1016/j.ejmech.2011.05.009

  doiwww.ncbi.nlm.nih.govwww.sciencedirect.comdx.doi.org

• Gredičak, Matija ; Supek, Fran ; Kralj, Marijeta, Majer, Zsuzsa ; Hollosi, Miklos ; Šmuc, Tomislav ; Mlinarić-Majerski, Kata ; Horvat, Štefica | Computational structure-activity study directs synthesis of novel antitumor enkephalin analogs // Amino acids (Wien), 38 (2010), 4; 1185-1191. doi: 10.1007/s00726-009-0329-5

  doiwww.springerlink.comdoi.org

• Supek, Fran ; Šmuc, Tomislav | On Relevance of Codon Usage to Expression of Synthetic and Natural Genes in Escherichia coli // Genetics, 185 (2010), 1129-1134. doi: 10.1534/genetics.110.115477

  doiwww.genetics.orgwww.genetics.org

• Supek, Fran ; Škunca, Nives ; Repar, Jelena ; Vlahoviček, Kristian ; Šmuc, Tomislav | Translational Selection Is Ubiquitous in Prokaryotes // PLOS genetics, 6 (2010), 6; e1001004, 13. doi: 10.1371/journal.pgen.1001004

  doiwww.plosgenetics.orgjournals.plos.org

• Budimir, Ana ; Šmuc, Tomislav ; Weitner, Tin ; Batinić-Haberle, Ines ; Biruš, Mladen | Thermodynamics and electrochemistry of manganese ortho-tetrakis(N-n-butylpyridinium-2-yl)porphyrin in aqueous solutions // Journal of coordination chemistry, 63 (2010), 14/16; 2750-2765. doi: 10.1080/00958972.2010.502571

  doiwww.tandfonline.com

• Rios-Morales, Ruth ; Gamberger, Dragan ; Šmuc, Tomislav ; Azuaje, Francisco | Innovative methods in assessing political risk for business internationalization // Research in international business and finance, 23 (2009), 144-156. doi: 10.1016/j.ribaf.2008.03.011

  doiwww.sciencedirect.comdoi.org

• Čož-Rakovac, Rozelinda ; Topić Popović, Natalija ; Šmuc, Tomislav ; Strunjak-Perović, Ivančica ; Jadan, Margita | Classification accuracy of algorithms for blood chemistry data of three aquaculture-influenced marine fish species // Fish physiology and biochemistry, 35 (2009), 4; 641-647. doi: 10.1007/s10695-008-9288-0

  doiwww.springerlink.com

• Krstačić, Goran ; Gamberger, Dragan ; Krstačić, Antonija ; Šmuc, Tomislav ; Miličić, Davor | The Chaos Theory and Non-linear Dynamics in Heart Rate Variability in Patients with Heart Failure // Computers in cardiology, 35 (2008), 957-959

  cinc.mit.edu

• Trontl, Krešimir ; Pevec, Dubravko ; Šmuc, Tomislav | Machine learning of the reactor core loading pattern critical parameters // Science and technology of nuclear installations, 2008 (2008), 695153, 7. doi: 10.1155/2008/695153

  doiwww.hindawi.comfulir.irb.hr

• Supek, Fran ; Kralj, Marijeta ; Marjanović, Marko ; Šuman, Lidija ; Šmuc, Tomislav ; Krizmanić, Irena ; Žinić, Biserka | Atypical cytostatic mechanism of N -1-sulfonylcytosine derivatives determined by in vitro screening and computational analysis // Investigational new drugs, 26 (2008), 2; 97-110. doi: 10.1007/s10637-007-9084-1

  doilink.springer.com

• Čož-Rakovac, Rozelinda ; Strunjak-Perović, Ivančica ; Topić Popović, Natalija ; Hacmanjek, Mato ; Šmuc, Tomislav ; Jadan, Margita ; Lipej, Zoran ; Homen, Zlatko | Cage culture effects on mullets (Mugilidae) liver histology and blood chemistry profile // Journal of fish biology, 72 (2008), 10; 2557-2569. doi: 10.1111/j.1095-8649.2008.01865.x

  doionlinelibrary.wiley.com

• Čož-Rakovac, Rozelinda ; Šmuc, Tomislav ; Topić Popović, Natalija ; Strunjak-Perović, Ivančica ; Hacmanjek, Mato ; Jadan, Margita | Novel methods for assesing fish blood biochemical data // Journal of applied ichthyology, 24 (2008), 1; 77-80. doi: 10.1111/j.1439-0426.2007.01041.x

  doionlinelibrary.wiley.com

• Supek, Fran ; Peharec, Petra ; Krsnik-Rasol, Marijana ; Šmuc, Tomislav | Enhanced analytical power of SDS-PAGE using machine learning algorithms // Proteomics, 8 (2008), 1; 28-31. doi: 10.1002/pmic.200700555

  doiwww.ncbi.nlm.nih.govonlinelibrary.wiley.com

• Malenica, Mislav ; Šmuc, Tomislav ; Šnajder, Jan ; Dalbelo Bašić, Bojana | Language Morphology Offset: Text Classification on a Croatian-English Parallel Corpus // Information processing & management, 44 (2008), 1; 325-339. doi: 10.1016/j.ipm.2006.12.007

  doiwww.sciencedirect.com

• Trontl, Krešimir ; Šmuc, Tomislav ; Pevec, Dubravko | Support vector regression model for the estimation of γ -ray buildup factors for multi-layer shields // Annals of nuclear energy, 34 (2007), 12; 939-952-x

  dx.doi.org

• Marjanović, Marko ; Kralj, Marijeta ; Supek, Fran ; Frkanec, Leo ; Piantanida, Ivo ; Šmuc, Tomislav ; Tušek-Božić, Ljerka | Antitumor potential of crown ethers: structure activity relationships, cell cycle disturbances and cell death studies of a series of ionophores // Journal of medicinal chemistry, 50 (2007), 5; 1007-1018. doi: 10.1021/jm061162u

  doipubs.acs.org

• Jelaković, Bojan ; Dika, Živka ; Kos, Jelena ; Pećin, Ivan ; Laganović, Mario ; Jovanović, Aleksandar ; Šmuc, Tomislav ; Gamberger, Dragan ; Kuzmanić, Duško | Liječenje i kontrola arterijske hipertenzije u Hrvatskoj. BEL-AH istraživanje // Liječnički vjesnik : glasilo Hrvatskoga liječničkog zbora, 128 (2006), 11-12; 329-333

  lijecnicki-vjesnik.hlz.hr

• Marić, Ivan ; Galović, Antun ; Šmuc, Tomislav | Calculation of natural gas isentropic exponent // Flow measurement and instrumentation, 16 (2005), 1; 13-20-x

• Supek, Fran ; Šmuc, Tomislav ; Lučić, Bono | A prototype structure-activity relationship model based on National Cancer Institute cell line screening data // Periodicum biologorum, 107 (2005), 4; 451-455-x

• Pavlović, Mladen ; Šantić, Branko ; Desnica-Franković, Dunja Ida ; Radić, Nikola ; Šmuc, Tomislav ; Desnica, Uroš V. | The Impact of Deep Levels on Photocurrent Transients in Semi-Insulating GaAs // Journal of Electronic Materials, 32 (2003), 10; 1100-1106. doi: 10.1007/s11664-003-0094-2

  doi

• Krstačić, Goran ; Gambberger, Dragan ; Šmuc, Tomislav ; Krstačić, Antonija | Some R-R interval based paroxysmal atrial fibrillation predictors // Computers in cardiology, 28 (2001), 409-412

• Grošev, Darko ; Medvedec, Mario ; Lončarić, Srećko ; Žuvić, Marijan ; Dodig, Damir ; Šmuc, Tomislav | Determination of small objects from pinhole scintigrams // Nuclear medicine communications, 19 (1998), 7; 679-688

Professional paper

• Jelaković, B ; Željković-Vrkić, T ; Pećin, I ; Dika, Ž ; Jovanović, A ; Podobnik, D ; Šmuc, T ; Gamberger, D ; Katić, K ; Kašner, M et al. | Arterial hypertension in Croatia - EH-UH study results // Acta medica Croatica, 61 (2007), 287-292

Review article (professional)

• Ahel, Marijan ; Antičić, Tome ; Balog, Tihomir ; Bilić, Nevenko ; Guberina, Branko ; Katušić Hećimović, Silva ; Jerić, Ivanka ; Klanjšček, Tin ; Legović, Tarzan ; Musić, Svetozar et al. | The Ruder Boskovic Institute – Today and Tomorrow // Periodicum biologorum, 112 (2010), 4; 369-374

  hrcak.srce.hr

Original scientific paper

• Brbić, Maria ; Piškorec, Matija ; Vidulin, Vedrana ; Kriško, Anita ; Šmuc, Tomislav ; Supek, Fran | Phenotype Inference from Text and Genomic Data // ECML-PKDD 2017, Lecture Notes in Computer Science. | Springer, 2017. str. 373-377. doi: 10.1007/978-3-319-71273-4_34

  doiecmlpkdd2017.ijs.si

• Levatić, Jurica ; Brbić, Maria ; Stepišnik Perdih, Tomaž ; Kocev, Dragi ; Vidulin, Vedrana ; Šmuc, Tomislav ; Supek, Fran ; Džeroski, Sašo | Phenotype prediction with semi-supervised learning // New frontiers in mining complex patterns NFMCP 2017, Lecture Notes in Computer Science. | 2017. str. 1-11

  www.di.uniba.it

• Mihelčić, Matej ; Džeroski, Sašo ; Lavrač, Nada ; Šmuc, Tomislav | Redescription Mining with Multi-target Predictive Clustering Trees // New Frontiers in Mining Complex Patterns: 4th International Workshop, NFMCP 2015, Held in Conjunction with ECML-PKDD 2015 : Revised Selected Papers / Ceci, Michelangelo; Loglisci, Corrado; Manco, Giuseppe et al. (ur.). | Cham: Springer International Publishing, 2016. str. 125-143. doi: 10.1007/978-3-319-39315-5_9

  doilink.springer.com

• Mihelčić, Matej ; Šmuc, Tomislav | InterSet: Interactive Redescription Set Exploration // Discovery Science : 19th International Conference, DS 2016 : Proceedings / Calders, Toon; Ceci, Michelangelo; Malerba, Donato (ur.). | Cham: Springer International Publishing, 2016. str. 35-50. doi: 10.1007/978-3-319-46307-0_3

  doilink.springer.com

• Vidulin, Vedrana ; Brbić, Maria ; Supek, Fran ; Šmuc, Tomislav | Evaluation of fusion approaches in large-scale bio-annotation setting // Proceedings of the 4th Workshop on Machine Learning in Life Sciences. | Wrocław: European Research Centre of Network Intelligence for Innovation Enhancement, 2016. str. 37-51

  mlls.kssk.pwr.edu.pl

• Piškorec, Matija ; Sluban, Borut ; Šmuc, Tomislav | MultiNets: Web-Based Multilayer Network Visualization // European Conference on Machine Learning and Knowledge Discovery in Databases / Bifet, Albert (ur.). | Springer, 2015. str. 298-302

  link.springer.com

• Antulov-Fantulin, Nino ; Lančić, Alen ; Štefančić, Hrvoje ; Šikić, Mile ; Šmuc, Tomislav | Statistical Inference Framework for Source Detection of Contagion Processes on Arbitrary Network Structures // 2014 IEEE Eighth International Conference on Self-Adaptive and Self-Organizing Systems Workshops SASOW 2014 : proceedings / Bilof, Randall (ur.). | Piscataway (NJ): IEEE Computer Society; Conference Publishing Services (CPS), 2014. str. 78-83

  arxiv.orgieeexplore.ieee.org

• Antulov-Fantulin, Nino ; Bošnjak, Matko ; Zlatić, Vinko ; Grčar, Miha ; Šmuc Tomislav | Synthetic Sequence Generator for Recommender Systems – Memory Biased Random Walk on a Sequence Multilayer Network // Discovery Science : 17th International Conference, DS 2014 : Proceedings / Džeroski, Sašo; Panov, Panče; Kocev, Dragi et al. (ur.). | Cham: Springer Cham, 2014. str. 25-36. doi: 10.1007/978-3-319-11812-3_3

  doiarxiv.orglink.springer.com

• Gamberger, Dragan ; Lučanin, Dražen ; Šmuc, Tomislav | Analysis of World Bank Indicators for Countries with Banking Crises by Subgroup Discovery Induction // Mipro-2013 Proceedings. | Rijeka, 2013. str. 1433-1437

• Piškorec Matija ; Bošnjak Matko ; Šmuc Tomislav | Meta-Modeling Execution Times of RapidMiner operators // Proceedings of the 3rd RapidMiner Community Meeting and Conference (RCOMM 2012). | 2012. str. 159-168

• Mihelčić, Matej ; Antulov-Fantulin, Nino ; Bošnjak, Matko ; Šmuc, Tomislav ; | Extending RapidMiner with recommender systems algorithms // Proceedings of the 3rd RapidMiner Community Meeting and Conference (RCOMM 2012). | Aachen: Shaker, 2012. str. 63-74

• Gamberger, Dragan ; Lučanin, Dražen ; Šmuc, Tomislav | Descriptive modeling of systemic banking crises // Discovery Science: 15th International Conference, DS 2012 : Proceedings / Ganascia, Jean-Gabriel; Lenca, Philippe; Petit, Jean-Marc (ur.). | Berlin, Heidelberg: Springer, 2012. str. 67-80

  link.springer.com

• Antulov-Fantulin, Nino ; Bošnjak, Matko ; Žnidaršič, Martin ; Grčar, Miha ; Morzy, Mikołaj ; Šmuc, Tomislav | ECML-PKDD 2011 Discovery Challenge Overview // Proceedings of the ECML-PKDD 2011 Workshop on Discovery Challenge. | Zagreb: Institut Ruđer Bošković, 2011. str. 7-20

• Prcela, Marin ; Gamberger, Dragan ; Šmuc, Tomislav ; Bogunović, Nikola ; | Information gain of structured medical diagnostic tests: Integration of Bayesian networks and ontologies // Proceedings of International Conference on Biomedical Engineering Systems and Technologies. | Institute for Systems and Technologies of Information, Control and Communication, 2010. str. 235-240

• Bogunović, Nikola ; Šmuc, Tomislav | Applicability of Qualitative ECG Processing to Wearable Computing // Proceedings of the 5th International Workshop and Symposium on Wearable and Implanzable Body Sensor Networks. | Hong Kong: Institute of Electrical and Electronics Engineers (IEEE), 2008. str. 133-136

• Trontl, Krešimir ; Pevec, Dubravko ; Šmuc Tomislav | On Input Vector Representation for the SVR Model of Reactor Core Loading Pattern Critical Parameters // 7th International Conference on Nuclear Option in Countries with Small and Medium Electricity Grids - Conference Proceedings. | Zagreb: Hrvatsko nuklearno društvo, 2008. str. S-06.90-1-S-06.90-10

• Gamberger, Dragan ; Prcela, Marin ; Jović, Alan ; Šmuc, Tomislav ; Parati, Ganfranco ; Valentini, Mariaconsuelo ; Kawecka-Jaszcz, Kalina ; Styczkiewicz, Katarzyna ; Kononowicz, Andrzej ; Candelieri, Antonio et al. | Medical knowledge representation within Heartfaid platform // BIOSTEC 2008. | INSTICC Institute for Systems and Technologies of Information, Control and Communication, 2008. str. 307-314-x

• Trontl, Krešimir ; Pevec, Dubravko ; Šmuc, Tomislav | Application of Support Vector Regression in Estimation of Buildup Factors for Double-Layered Shields // Proceedings of European Nuclear Conference ENC 2005. | SFEN, 2005

• Topić, Goran ; Šmuc, Tomislav ; Šojat, Zorislav ; Skala, Karolj | Reimplementation of the Random Forest Algorithm // Parallel Numerics, Theory and Applications. | Salzburg: University of Salzburg, 2005. str. 119-128-x

• Gergeta, Kristijan ; Pevec, Dubravko ; Šmuc, Tomislav | Depletion Modeling of Integral Burnable Absorbers Containing Enriched Boron // 5th International Conference Nuclear Option in Countries with Small and Medium Electricity Grids. | Zagreb: Hrvatsko nuklearno društvo, 2004. str. S_3.28.1-S_3.28.-x

• Gamberger, Dragan ; Šmuc, Tomislav ; Lavrač, Nada | Subgroup Discovery: On-line Data Mining Server and its Application // Simulations in Biomedicine V. | Wessex Institute of Technology Press, 2003. str. 433-442-x

• Šmuc, Tomislav | Improving Convergence Properties of the Differential Evolution Algorithm // Proceedings of the MENDEL 2002 - 8th International Conference on Soft Computing. | Brno, 2002. str. 80-86-x

• Trontl, Krešimir ; Gergeta, Kristijan ; Šmuc, Tomislav | FUMACS-G, a Graphical User Interface for FUMACS Code Package // Proceedings of 4th International Conference Nuclear Option in Countries with Small and Medium Electricity Grids. | Zagreb: Hrvatsko novinarsko društvo (HND), 2002. str. 4.11.1-4.11.8-x

• Krstačić, Goran ; Krstačić, A. ; Martinis, Mladen ; Vargović, E. ; Knežević, A. ; Šmalcelj, Anton ; Jembrek-Gostović, M. ; Gamberger, Dragan ; Šmuc, Tomislav | Non-Linear Analysis of Heart Rate Variability in Patients with Coronary Heart Disease // Computers in Cardiology 2002. | Memphis (TN), 2002. str. 673-675-x

• Krstačić, Goran ; Krstačić, Antonija ; Martinis, Mladen, Vargović, Emil ; Knežević, Andrea, Šmalcelj, Anton ; Jembrek-Gostović, Mirjana ; Gamberger, Dragan ; Šmuc, Tomislav, | Non-linear Analysis of Heart Rate Variability in Patients with Coronary Heart Disease // Computers in Cardiology. | Institute of Electrical and Electronics Engineers (IEEE), 2002. str. 673 - 675-x

• Šmuc, Tomislav | Sensitivity of Differential Evolution Algorithm to Values of Control Parameters // Proceedings of the International Conference on Artificial Intelligence. | CSREA Press, 2002. str. 1087-1093-x

• Šmuc, Tomislav ; Marić, Ivan ; Bosanac, Gordan ; Gamberger, Dragan ; Bogunović, Nikola ; Krstačić, Goran | Dynamic Features of the Normal Heart Rate Variability // Proceedings of International Conference Computers in Cardiology 2002. | Institute of Electrical and Electronics Engineers (IEEE), 2002. str. 241-244. doi: 10.1109/CIC.2002.1166752

  doiieeexplore.ieee.org

• Šmuc, Tomislav ; Gamberger, Dragan ; Krstačić, Goran | Combining unsupervised and supervised machine learning in analysis of the CHD patient database // 8th Conference on Artificial Intelligence in Medicine in Europe. | Berlin: Springer, 2001. str. 109-112-x

• Krstačić, Goran ; Gamberger, Dragan ; Šmuc, Tomislav | Coronary heart disease patient models based on inductive machine learning // 8th Conference on Artificial Intelligence in Medicine in Europe. | Berlin: Springer, 2001. str. 113-116-x

• Pevec, Dubravko ; Grgić, Davor ; Ječmenica, Radomir ; Trontl, Krešimir ; Gergeta, Kristijan ; Šmuc, Tomislav | Upgrade of the FUMACS Code Package // Proceedings of the International Conference Nuclear Energy in Central Europe 2001. | 2001

• Pevec, Dubravko ; Šmuc, Tomislav | Investigating a Possibility to Extend an Operating Cycle Length of NPP Krško // Operating Cycle Extension of Nuclear Power Plants, Proceeedings of a Technical Committee Meeting. | Beč: International Atomic Energy Agency (IAEA), 2000. str. 15-24-x

• Baće, Mile ; Trontl, Krešimir ; Šmuc, Tomislav | Double Tiering as an Option for Spent Fuel Pool Capacity Increase // Proceedings of the International Conference Nuclear Energy in Central Europe 2000. | Ljubljana: Nuclear Society of Slovenia, 2000. str. 105-112-x

• Baće, Mile ; Trontl, Krešimir ; Šmuc, Tomislav | Double tiering as an option for spent fuel pool capacity increase // Proceedings of the International Conference Nuclear Energy in Central Europe 2000. | Ljubljana: NSS, 2000. str. 105.1-105.8

• Baće, Mile ; Ječmenica, Radomir ; Šmuc, Tomislav | Radiological shielding analysis of special building for the old NPP Krško steam generators // Proceedings International Conference "Nuclear Option in Countries with Small and Medium Electricity Grids" / Knapp, Vladimir ; Čavlina, Nikola (ur.). | Zagreb: Hrvatsko nuklearno društvo, 2000. str. 431-438

  inis.iaea.org

• Šmuc, Tomislav ; Bogunović, Nikola ; Šarić, Davor | Evolutionary Algorithm for Steiner Tree Optimization // Proc. of the 21st Int. Conf. ITI'99 - Information Technology Interfaces. | Zagreb: Fakultet elektrotehnike i računarstva Sveučilišta u Zagrebu, 1999. str. 425-432

• Bogunović, Nikola ; Šmuc, Tomislav | Comparison of Methods for Reduction of Computational Complexity in Bayesian Networks // Computers in Intelligent Systems. | Rijeka: Hrvatska udruga za informacijsku i komunikacijsku tehnologiju, elektroniku i mikroelektroniku - MIPRO, 1999. str. 17-20

• Šmuc, Tomislav ; de Leege, P.F.A. | Improved Cross-Section Homogenisation for Research Reactor Criticality Calculations // Proceedings of The Sixth Int. Conf. on Nuclear Criticality Safety. | Pariz, 1999. str. 262-268-x

• Šmuc, Tomislav ; de Leege P.F.A., Kloosterman J.L. | Demonstration of the Compact Depletion Models for Burnup Calculations // Proceedings of the Int. Conf. on Mathematics and Computation, Reactor Physics and Environmental Analysis in Nuclear Applications. | Madrid: Senda Editorial,S.A., 1999. str. 1901-1911-x

• Baće, Mile ; Ječmenica, Radomir ; Šmuc, Tomislav | Validation of SCALE Code Package on High Performance Neutron Shields // International Conference: Nuclear Energy in Central Europe '99, Proceedings, Volume 1. | Ljubljana: Nuclear Society of Slovenia, 1999. str. 75-81-x

• Bilić, Tea ; Pevec, Dubravko ; Šmuc, Tomislav | Investigating a possibility to implement 24-month cycle in NPP Krško // Proceedings of the 5th Regional Meeting : Nuclear Energy in Central Europe. | Ljubljana: Nuclear Society of Slovenia, 1998. str. 107-114

• Šmuc, Tomislav ; Pevec, Dubravko ; Bilić, Tea | Equilibrium Cycles of NPP Krško after Power Uprate // International Conference: Nuclear Option in Countries with Small and Medium Electricity Grids, Conference Proceedings. | Zagreb: Hrvatsko nuklearno društvo, 1998. str. 211-218-x

• Šmuc, Tomislav ; Ječmenica, Radomir ; Trontl, Krešimir | Validation of QAD-CGGP for Shielding Analyses of Intermediate and Low Level Waste Drums // International Conference Nuclear Option in Countries with Small and Medium Electricity Grids : Conference Proceedings. | Zagreb: Hrvatsko nuklearno društvo, 1998. str. 456-463

• Baće, Mile ; Pevec, Dubravko ; Šmuc, Tomislav | Reracking Possibilities of the NPP Krško Spent Fuel Pool // International Conference: Nuclear Option in Countries with Small and Medium Electricity Grids, Conference Proceedings. | Zagreb: Hrvatsko nuklearno društvo, 1998. str. 365-371-x

• Bilić, Tea ; Pevec, Dubravko ; Šmuc, Tomislav | Investigating a possibility to implement 24-month cycle in NPP Krško // Nuclear Energy in Central Europe '98, Proceedings. | Ljubljana: Nuclear Society of Slovenia, 1998. str. 107-113-x

• Trontl, Krešimir ; Baće, Mile ; Šmuc, Tomislav | Incorporation of multi-layer option into QAD-CGGP code // Nuclear Energy in Central Europe '98, Proceedings. | Ljubljana: Nuclear Society of Slovenia, 1998. str. 139-146-x

• Baće, Mile ; Pevec, Dubravko ; Šmuc, Tomislav | Reracking Possibilities of the NPP Krško Spent Fuel Pool // Proceedings of the International Conference: Nuclear Option in Countries with Small and Medium Energy Grid. | Zagreb: Hrvatsko nuklearno društvo, 1998. str. 365-371

• Šmuc, Tomislav ; Pevec, Dubravko ; Bilić, Tea | Equilibrium cycles of NPP Krško after power uprate // Proceedings of the International Conference: Nuclear Option in Countries with Small and Medium Grid. | Zagreb: Hrvatsko nuklearno društvo, 1998. str. 211-218

• Trontl, Krešimir ; Baće, Mile ; Šmuc, Tomislav | Incorporation of multi-layer option into QAD-CGGP code // Proceedings of the 5th Regional Meeting : Nuclear Energy in Central Europe. | Ljubljana: Nuclear Society of Slovenia, 1998. str. 139-146-x

• Baće, Mile ; Pevec, Dubravko ; Šmuc, Tomislav | Impact of burnup credit on the NPP Krško spent fuel pool criticality // Proceedings of the 4th Regional Meeting : Nuclear Energy in Central Europe. | Ljubljana: Nuclear Society of Slovenia, 1997. str. 1-7

• Baće, Mile ; Pevec, Dubravko ; Šmuc, Tomislav | Impact of Burnup on the NPP Krško Spent Fuel Pool Criticality // Proceedings of 4th Regional Meeting Nuclear Energy in Central Europe. | Nuclear Society of Slovenia, 1997. str. 331-337-x

• Bernnat, Wolfgang ; Lutz, Dietrich ; Pevec, Dubravko ; Šmuc, Tomislav | Generation of group constants for NPP Krško using RSYST code package // Proceedings of International Conference : Nuclear Option in Countries with Small and Medium Electricity Grid. | Zagreb: Hrvatsko nuklearno društvo, 1996. str. 463-470

Other

• Gamberger, Dragan ; Krstačić, Goran ; Šmuc, Tomislav | Medical expert evaluation of machine learning results for a coronary heart disease database // Medical Data Analysis. | Berlin: Springer, 2000. str. 159-168-x

• Gamberger, Dragan ; Lavrač, Nada ; Krstačić, Goran ; Šmuc, Tomislav | Inconsistency tests for patient records in a coronary heart disease database // Medical Data Analysis. | Berlin: Springer, 2000. str. 183-189-x

Conference abstract

• Punčec, Marina; Šmuc, Tomislav; Stepanić, Višnja | How reliable are in silico predictions? A comparative study of ML models // 1st Croatian Summer School on Medicinal Chemistry : Book of abstracts / Stepanić, Višnja; Malatesti, Nela; Gabelica Marković, Vesna et al. (ur.). | Zagreb: Croatian Chemical Society, 2025. str. 39-39

  cssmc.hkd.hr

• Stepanić, Višnja ; Barešić, Anja; Kulikovskikh, Ilona; Šmuc, Tomislav | Invitation to enhance capacities for technology transfer, company building and innovations in the field of ICT in the Danube region // 10th Regional Biophysics Conference & 15th International Summer School of Biophysics : Book of abstracts / Dolanski Babić, Sanja; Dutour Sikirić, Maja; Stepanić, Višnja et al. (ur.). | Split: Hrvatsko Biofizičko Društvo, 2024. str. 58-58

• Punčec, Marina; Šmuc, Tomislav; Stepanić, Višnja | Hierarchical in silico pipeline for identifying active compounds and/or protein targets // IX EFMC International Symposium on Advances in Synthetic and Medicinal Chemistry: Book of Abstracts / Gademann, Karl; Hartung, Ingo (ur.). | Zagreb: European Federation for Medicinal chemistry and Chemical biology (EFMC), 2023. str. 316-316

• Matulja, Dario ; Matijević, Gabrijela ; Babić, Sanja ; Grbčić, Petra ; Bojanić, Krunoslav ; Laclef, Sylvain ; Jović, Ozren ; Šmuc, Tomislav ; Car, Iris ; Sedić, Mirela et al. | Bioprospecting of the Adriatic coral Eunicella cavolini // 28th CROATIAN MEETING OF CHEMISTS & CHEMICAL ENGINEERS. | Zagreb: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI), 2023. str. 101-101

• Baković, Marija ; Jurić, Sara ; Punčec, Marina ; Martić, Ana ; Matijević, Gabrijela ; Djedović, Elvis ; Šmuc, Tomislav ; Roje, Marin ; Čož-Rakovac, Rozelindra | The Influence of Different Drying Temperatures on the Phenolic Profile and Biological Activity of the Cyanobacterium Spirulina sp. // Book of Abstracts of 15th World Congress on Polyphenols Applications. | 2022. str. 80-80

• Punčec, Marina ; Stepanić, Višnja ; Šmuc, Tomislav | Visual Analytics of Structure-Activity Relationships of Natural Products and Drugs // Computational Chemistry Day 2022 : book of abstracts. | Zagreb: Prirodoslovno-matematički fakultet Sveučilišta u Zagrebu, 2022. str. 35-35

  drive.google.com

• Lučić, Bono ; Stepanić, Višnja ; Fa, Dionizije ; Jović, Ozren ; Lipić, Tomislav ; Šmuc, Tomislav | Possibility of discrimination between approved and withdrawn drugs using multivariate classification structure-property models based on molecular descriptors // Math/Chem/Comp 2022 and 33rd MC2 Conference : Book of Abstracts. | Zagreb: Hrvatsko kemijsko društvo, 2022. str. 21-21

  mcc.hkd.hr

• Baković, Marija ; Martić, Ana ; Jurić, Sara ; Punčec, Marina ; Matijević, Gabrijela ; Djedović, Elvis ; Šmuc, Tomislav ; Roje, Marin ; Čož-Rakovac, Rozelindra | Spirulina sp. – different drying temperatures and it’s biological activity // AlgaEurope 2022: Book of abstracts. | -, 2022. str. 225-225

  www.itccanarias.org

• Punčec, Marina ; Stepanić, Višnja ; Šmuc, Tomislav | Bioactivity potential and druglikeness of natural products from marine organisms // Abtracts World Aquaculture 2021 / Garza de Yta, Antonio (ur.). | Merida: World aquaculture, 2022. str. 237-237

  wasblobstorage.blob.core.windows.net

• Stepanić, Višnja ; Oršolić, Davor ; Pehar, Vesna ; Šmuc, Tomislav | Development of phytotoxic natural molecules as complementary herbicidal agents is supported by machine learning study // Book of Abstracts of 1st international conference "Food & Climate Change". | Koprivnica, 2021. str. 39-39

  perspire.eu

• Stepanić, Višnja ; Oršolić, Davor ; Šmuc, Tomislav | (Re)purposing starts virtually by predictive machine-learning models // 27th Croatian Meeting of Chemists and Chemical Engineers and 5th Symposium Vladimir Prelog : Book of Abstracts. | Zagreb: Hrvatsko kemijsko društvo, 2021. str. 16-16

  27hskiki.hkd.hr

• Piškorec, Matija ; Šmuc, Tomislav ; Šikić, Mile | Differentiating between Exogenous and Endogenous Information Propagation in Social Networks // Second International Workshop on Data Science : Abstract Book. | 2017. str. 39-41

• Matija Piškorec, Nino Antulov-Fantulin, Iva Miholić, Tomislav Šmuc, Mile Šikić | Inference of influence in social networks // CompleNet'17 : Programme with Abstracts. | 2017. str. 93-93

  complenet17.weebly.com

• Antolović, Vlatka; Šmuc, Tomisla ; Weber, Igor | Cluster analysis of the cell migration in Dictyostelium // Dicty 2014, Annual International Dictyostelium Conference. | Potsdam: Deutsche Gesellschaft für Zellbiologie (DGZ), 2014. str. 64-64

  dicty2014.de

• Antolović, Vlatka ; Šmuc, Tomislav ; Weber, Igor. | Characterizing cell migration in actin cytoskeleton mutants of Dictyostelium discoideum // The 14th International ELMI Meeting. | Oslo, 2014. str. 133-134

• Čož-Rakovac, Rozelinda ; Fazio, Francesco ; Šmuc, Tomislav ; Topić Popović, Natalija ; Strunjak- Perović, Ivančica ; Sauerborn Klobučar, Roberta ; Piccione, Giuseppe ; Faggio, Caterina | Blood biochemical approach in differentiation of Adriatic and Tyrrhenian mullet populations (Genus Mugil Linnaeus, 1758) // Book of Abstracts, 48th CROATIAN AND 8th INTERNATIONAL SYMPOSIUM ON AGRICULTURE. | Osijek: Poljoprivredni fakultet Sveučilišta Josipa Jurja Strossmayera u Osijeku, 2013. str. 228-229

• Antolović, Vlatka ; Šmuc, Tomislav ; Weber, Igor | Characterizing the movement of different actin cytoskeleton mutants of Dictyostelium discoideum // Computational Biology and Innovation Symposium. | Dublin, 2013. str. 38-38

• Čolak, Slavica ; Čož-Rakovac, Roselinda ; Šmuc, T. ; Lovrinov, Mario ; Topić Popović, Natalija ; Strunjak-Perović, Iva ; Barišić, Josip ; Jadan, Margita ; Beer Ljubić, B. ; Šimpraga, M. et al. | Biokemijski profil hemolimfe triju vrsta dekapodnih rakova. | 2012

• Čolak, Slavica ; Čož-Rakovac, Rozelinda ; Šmuc, Tomislav ; Lovrinov, Mario ; Topić Popović, Natalija ; Strunjak-Perović, Ivančica ; Barišić, Josip ; Jadan, Margita ; Beer Ljubić, Blanka ; Šimpraga, Miljenko et al. | Hemolymph biochemistry profile of three decapod crustaceans // Proceedings/Book of Abstracts. 47 Croatian and 7 International Symposium on Agriculture. | Zagreb: Luna Grafika, 2012. str. 154-155

• Vojta, Aleksandar ; Šmuc, Tomislav ; Radin, Lada ; Shek-Vugrovečki, Ana ; Šimpraga, Miljenko | Significance and calculation of reference intervals for blood analytes in organically raised small ruminants // International Meeting of Croatian Physiological Society, Abstract Book. | Zagreb: Hrvatsko društvo fiziologa, 2011. str. 29-29

• Čolak, Slavica ; Čož-Rakovac, Rozelinda ; Šmuc, Tomislav ; Lovrinov, Mario ; Topić Popović, Natalija ; Strunjak-Perović, Ivančica ; Jadan, Margita ; Barišić, Josip ; Beer Ljubić, Blanka ; Šimpraga, Miljenko et al. | Haemolymph biochemistry profile of lobster Palinurus elephas (Fabricius, 1787) after exposure to emersion // 15th International Conference on Diseases of Fish and Shellfish : Abstract book. | Split, 2011. str. 281-281

• Čož-Rakovac, Rozelinda ; Strunjak-Perović, Ivančica ; Topić Popović, Natalija ; Šmuc, Tomislav ; Jadan, Margita ; Čolak, Slavica ; Lovrinov, Mario ; Milina, Ana ; Barišić, Josip | Discrimination between shade fish physiological profile based on blood biochemistry using statistical classification models // Book of Abstracts ; 46th Croatian & 6th International Symposium on Agriculture. | Zagreb: Agronomski fakultet Sveučilišta u Zagrebu, 2011. str. 173-176

• Supek, Fran ; Škunca, Nives ; Šmuc, Tomislav | Redundancy Elimination and Visualization of Gene Ontology Term Lists // ISMB & ECCB 2009. | 2009

• Skunca, Nives ; Supek, Fran ; Smuc, Tomislav ; Panov, Pance ; Dzeroski, Saso | Functional annotation of orthologous groups by using hierarchical multi label classification // ISMB & ECCB 2009. | 2009

• Supek, Fran ; Šmuc, Tomislav ; Repar, Jelena ; Škunca, Nives | GORBI: Web application for the prediction of a protein's functional context // The 3rd Adriatic Meeting on Computational Solutions in the Life Sciences - Book of Abstracts. | Zagreb: Institute of Computational Life Sciences (ICLS), 2009. str. 76-76

• Škunca, Nives ; Šmuc, Tomislav ; Supek, Fran | REViGO: Redundancy Elimination and Visualization of Gene Ontology Term Lists // The 3rd Adriatic Meeting on Computational Solutions in the Life Sciences - Book of Abstracts. | Zagreb: Institute of Computational Life Sciences (ICLS), 2009. str. 75-75

• Čož-Rakovac, Rozelinda ; Strunjak-Perović, Ivančica ; Topić Popović, Natalija ; Šmuc, Tomislav ; Jadan, Margita ; Galetović, Sonja ; Čolak, Slavica ; Lovrinov, Mario ; Milina, Ana | Seasonal blood chemistry patterns of shade fish Argyrosomus regius // Diseases of Fish and Shellfish ; 14th EAFP International Conference ; Prague, September 14-19, 2009. | Prag: HALAMA Publishing House, 2009. str. 287-287

• Škunca, Nives ; Supek, Fran ; Repar, Jelena ; Šmuc, Tomislav | Evaluation of intergene distances across bacterial species // ECCB 2008 Proceedings. | 2008

  www.eccb08.org

• Supek, Fran ; Kralj, Marijeta ; Žinić, Biserka ; Šmuc, Tomislav | Computational analysis of in vitro screening data highlights an atypical cytostatic mechanism of a cytosine derivative // ECCB 2008 Proceedings. | 2008

  www.eccb08.org

• Repar, Jelena ; Škunca, Nives ; Supek, Fran ; Šmuc, Tomislav | An XML format for peptide datasets // ECCB'08 European Conference on Computational Biology. | 2008

  www.eccb08.org

• Pecin, I. ; Zeljković-Vrkić, T. ; Dika, Z. ; Laganovic, M. ; Kos, J. ; Borso, G. ; Kuzmanić, D. ; Smuc, T. ; Gamberger, D. ; Jelaković, B. | Differences in obesity and hypertension between continental and mediterranean Croatian regions. EHUH study results. | 2007. str. s201-s201

• Pevec, Dubravko ; Baće, Mile ; Šmuc, Tomislav ; Ječmenica, Radomir ; Trontl, Krešimir | Neutroničko modeliranje nuklearnog goriva koje sadrži integralne sagorive apsorbere // Knjiga sažetaka 5. znanstvenog skupa Hrvatskog fizikalnog društva. | 2007. str. 121-121

• Supek, Fran ; Šmuc, Tomislav | Predicting Gene Ontology Categories from Heterogeneous Genomic Data // 4th European Conference on Computational Biology (ECCB 2005) Programme and Abstracts Book. | Madrid, 2005

  lis.irb.hr

• Laganović M ; Jelaković, Bojan ; Kuzmanić D ; Boršo G ; Rončević T ; Vdović M ; Željković T ; Kašner M ; Šmuc, Tomislav ; Gamberger, Dragan | Blood pressure – kidney volume relationship in essential hypertension // Journal of Hypertension, Supplement. | 2004. str. s220-s220

• Baće, Mile ; Pevec, Dubravko ; Šmuc, Tomislav ; Trontl, Krešimir ; Gergeta, Kristijan | Tehno-ekonomski aspekti ultra dugih radnih ciklusa // Knjiga sažetaka 4 znanstveni sastanak Hrvatskog fizikalnog društva. | Zagreb: Hrvatsko fizikalno društvo, 2003. str. 85-85

• Kašner Mario ; Jelaković Bojan ; Laganović Mario ; Kuzmanić Duško ; Boršo Gordana ; Željković Tajana ; Rončević Tomislav ; Šmuc Tomislav ; Gamberger Dragan ; Rončević Pavle | Serum uric acid is apart to the metabolic syndrome ralated to the seru aldosterone concentration in essential hypertension // Journal of Hypertension, Supplement. | 2003. str. s81-x

  www.abstracts2view.com

• Desnica, Uroš ; Šantić, Branko ; Pavlović, Mladen ; Desnica-Franković, Ida Dunja ; Radić, Nikola ; Šmuc, Tomislav ; Petrović, Bojan | Defekti s dubokim novoima i foto-električka svojstva GaAs // Knjiga sažetaka 2. znanstvenog sastanka Hrvatskog fizikalnog društva. | Zagreb: Hrvatsko fizikalno društvo, 1999. str. 14-14-x

Professional paper

• Bošnjak, Matko ; Antulov-Fantulin, Nino ; Šmuc, Tomislav ; Gamberger, Dragan | Constructing recommender systems workflow templates in RapidMiner // Proceedings of the 2nd RapidMiner Community Meeting and Conference (RCOMM 2011). | Aachen: Shaker, 2011. str. 101-112

Extended conference abstract

• Vidulin, Vedrana ; Šmuc, Tomislav ; Supek, Fran | Speed and accuracy benchmarks of large-scale microbial gene function prediction with supervised machine learning // Discovery science : book of abstracts. | 2014. str. 1-3

  ds2014.ijs.si

Conference abstract

• Jelaković, Bojan ; Željković-Vrkić, T. ; Pećin, I. ; Jovanović, Aleksandar ; Podobnik, D. ; Šmuc, Tomislav ; Gamberger, Dragan ; Laganović, Mario ; Dika, Živka ; Boršo, Gordana et al. | Epidemiology of hypertension in Croatia. EHUH study // Journal of hypertension. Supplement, 2006. str. 242-242

• Jelaković, Bojan ; Pećin, I. ; Željković-Vrkić, T. ; Dika, Živka ; Laganović, Mario ; Kos, Josip ; Jovanović, Aleksandar ; Boršo, Gordana ; Kuzmanic, Duško ; Šmuc, Tomislav | Education and income as determinants for blood pressure value and hypertension prevalence in Croatia. EHUH study results // Journal of hypertension. Supplement, 2006. str. 347-347

Original scientific paper

• Piškorec, Matija ; Antulov-Fantulin, Nino ; Miholić, Iva ; Šmuc, Tomislav ; Šikić, Mile | Modeling Peer and External Influence in Online Social Networks: Case of 2013 Referendum in Croatia // Studies in computational intelligence, 2017. str. 1015-1027. doi: 10.1007/978-3-319-72150-7_82

  doi

Unpublished conference paper

• Hršak, Dalibor;Grubišić, Ivan; Novak, Jurica; Punčec, Marina; Šmuc, Tomislav; Stepanić, Višnja | Assessment of the contrastive learning approach to the out of distribution problem in the DREAM Target 2035 Challenge // MAINFRAME Symposium on AI-Driven Small-Molecule Drug Discovery | Barcelona, Španjolska, 18.03.2026-19.03.2026

  event.fourwaves.com

• Fumić, Barbara; Bujak, Maro; Šmuc, Tomislav; Bojanić, Krunoslav; Topić Popović, Natalija; Čož-Rakovac, Rozelinda; Roje, Marin | Identification of polyphenols in samples of nine different plant species (lavender, immortelle, winter savory and 6 types of basil) // 16th World Congress on Polyphenols Applications | Attard, Malta, 28.09.2023-29.09.2023

• Babić, Sanja; Begić, Karolina; Čižmek, Lara; Ul’yanovskii, NIkolay V; Kosyakov, Dmitry S; Cikoš, Anamarija; Jokić, Stela; Strunjak-Perović, Ivančica; Topić Popović, Natalija; Šmuc, Tomislav et al. | Pigments and its derivatives: Unlocking the biological potential of macroalga Cystoseira compressa // XIII ECMNP European Conference on Marine Natural Products | Granada, Španjolska, 03.09.2023-08.09.2023

• Stepanić, Višnja ; Oršolić, Davor ; Šmuc, Tomislav | Machine learning in chemical compound space // Mini-simpozij Hrvatskog kemijskog društva Rijeka 2022. | Rijeka, Hrvatska, 04.07.2022-04.07.2022

  www.biotech.uniri.hr

• Čož-Rakovac, Rozelinda ; Babić, Sanja ; Topić Popović, Natalija ; Šmuc, Tomislav | Determination of bioactive potential of brown alga Padina pavonica from the Adriatic Sea // XX International Symposium on Fish Nutrition and Feeding Towards Precision Fish Nutrition and Feeding (ISFNF) | Sorrento, Italija, 05.06.2022-09.06.2022

• Oršolić, Davor ; Lučić, Bono ; Stepanić, Višnja ; Šmuc, Tomislav | Prediction of Drug-Kinase Binding Affinities with Focus on Conserved Protein Kinase Domain // ISMB/ECCB 2021 (29th Annual Conference) | Virtual Event, 25.07.2021-30.07.2021

• Grubišić, Ivan ; Lipić, Tomislav ; Mesić, Benjamin ; Šmuc, Tomislav | BricksND - Benchmark for disentangled concept learning // 5th International Workshop on Data Science (IWDS 2020) | Zagreb, Hrvatska, 24.11.2020-24.11.2020

  fulir.irb.hrfulir.irb.hrfulir.irb.hr

Doctoral thesis

• Piškorec, Matija | Statistical inference of exogenous and endogenous information propagation in social networks / Šikić, Mile ; Šmuc, Tomislav (mentor). | Zagreb, Fakultet elektrotehnike i računarstva, 2019

  urn.nsk.hr

• Antulov-Fantulin, Nino | Statistical inference algorithms for epidemic processes on complex networks / Šikić, Mile ; Šmuc, Tomislav (mentor). | Zagreb, Fakultet elektrotehnike i računarstva, 2015

• Supek, Fran | Detecting natural selection for translational efficiency in bacterial and archaeal genomes: a machine learning approach / Šmuc, Tomislav (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2010

• Trontl, Krešimir | Primjena regresijskog modela s potpornim vektorima u proračunu reaktorskog štita / Pevec, Dubravko ; Šmuc, Tomislav (mentor). | Zagreb, Fakultet elektrotehnike i računarstva, 2008

Study

• Pevec, Dubravko ; Šmuc, Tomislav ; Grgić, Davor ; Trontl, Krešimir ; Ječmenica, Radomir ; Gergeta, Kristijan ; Matijević, Mario | Upgrade of FUMACS Code Package for Modeling of NGF and Gadolinium, Final Report, 2009

• Stojanovski, Jadranka ; Zorc, Hrvoje ; Pećar-Ilić, Jadranka ; Šmuc, Tomislav ; Bronić, Josip ; Pintar, Ivan ; Skala, Karolj | Strategija razvoja mrežnih stranica Instituta Ruđer Bošković // interni dokument IRB, 2002

• Pevec, Dubravko ; Baće, Mile ; Ječmenica, Radomir ; Trontl, Krešimir ; Šmuc, Tomislav ; Grgić, Davor | Modernizacija paketa računalskih programa FUMACS, 2000

• Pevec, Dubravko ; Šmuc, Tomislav ; Urli, Natko | Gospodarenje gorivom u jezgri reaktora NE Krško u uvjetima predviđenog povećanja snage reaktora nakon zamjene parogeneratora // Gospodarenje gorivom u jezgri reaktora NE Krško u uvjetima predviđenog povećanja snage reaktora nakon zamjene parogeneratora, 1998

• Pevec, Dubravko ; Šmuc, Tomislav ; Urli, Natko | Analiza moderatorskog temperaturnog koeficijenta jezgre NE Krško u uvjetima povećanja snage // Analiza moderatorskog temperaturnog koeficijenta jezgre NE Krško u uvjetima povećanja snage, 1998

• Pevec, Dubravko ; Baće, Mile ; Šmuc, Tomislav ; Ječmenica, Radomir ; Trontl, Krešimir | Razvoj metoda i programa za proračun štitova od nuklearnog zračenja // Razvoj metoda i programa za proračun štitova od nuklearnog zračenja, 1998

• Pevec, Dubravko ; Šmuc, Tomislav ; Ječmenica, Radomir ; Trontl, Krešimir | Analiza 24 mjesečnog radnog ciklusa NE Krško u uvjetima povećanja snage, 1998

• Baće, Mile ; Grgić, Davor ; Jakopec, S. ; Knapp, Vladimir ; Kulišić, Petar ; Petković, Tomislav ; Pevec, Dubravko ; Šmuc, Tomislav | Analiza, provjera i proračun štitova za odlaganje radioaktivnog otpada // Arhiva Nuklearna elektrana Krško, 1989

Expert report

• Baće, Mile ; Knapp, Vladimir ; Kulišić, Petar ; Pevec, Dubravko ; Jakopec, S. ; Šmuc, Tomislav | Proračun štita za gama zračenje iz srednje aktivnog otpada nuklearne elektrane // Arhiva Zavoda za primjenjenu fiziku, FER, 1987

ISCB - International Society for Computational Biology

ENS - European Nuclear Society

HNS - Croatian Nucelar Society