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Zhou, Naihui ; Jiang, Yuxiang ; Bergquist, Timothy R. ; Lee, Alexandra J. ; Kacsoh, Balint Z. ; Crocker, Alex W. ; Lewis, Kimberley A. ; Georghiou, George ; Nguyen, Huy N. ; Hamid, Md Nafiz et al. | The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens // Genome biology, 20 (2019), 1; 244, 23. doi: 10.1186/s13059-019-1835-8
doigenomebiology.biomedcentral.com
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Mihelčić, Matej ; Šmuc, Tomislav | Approaches for Multi-View Redescription Mining // IEEE access, 9 (2021), 19356-19378. doi: 10.1109/access.2021.3054245
doiieeexplore.ieee.orgieeexplore.ieee.orgfulir.irb.hr
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Jović, Ozren ; Šmuc, Tomislav | Search for Novel Lead Inhibitors of Yeast Cytochrome bc1, from Drugbank and COCONUT // Molecules, 26 (2021), 14; 4323, 21. doi: 10.3390/ molecules26144323
doiwww.mdpi.comdoi.orgfulir.irb.hr
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Vlainić, Josipa ; Jović, Ozren ; Kosalec, Ivan ; Vugrek, Oliver ; Čoz-Rakovac, Rozelindra ; Šmuc, Tomislav | In Vitro Confirmation of Siramesine as a Novel Antifungal Agent with In Silico Lead Proposals of Structurally Related Antifungals // Molecules, 26 (2021), 12; 3504, 17. doi: 10.3390/molecules26123504
doiwww.mdpi.comfulir.irb.hr
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Matulja, Dario ; Grbčić, Petra ; Bojanić, Krunoslav ; Topić-Popović, Natalija ; Čož-Rakovac, Rozelindra ; Laclef, Sylvain ; Šmuc, Tomislav ; Jović, Ozren ; Marković, Dean ; Pavelić Kraljević, Sandra | Chemical Evaluation, Antioxidant, Antiproliferative, Anti-Inflammatory and Antibacterial Activities of Organic Extract and Semi-Purified Fractions of the Adriatic Sea Fan, Eunicella cavolini // Molecules, 26 (2021), 19; 5751, 21. doi: 10.3390/molecules26195751
doiwww.mdpi.comfulir.irb.hrdoi.org
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Cichońska, Anna ; Ravikumar, Balaguru ; Allaway, Robert J. ; Wan, Fangping ; Park, Sungjoon ; Isayev, Olexandr ; Li, Shuya ; Mason, Michael ; Lamb, Andrew ; Tanoli, Ziaurrehman et al. | Crowdsourced mapping of unexplored target space of kinase inhibitors // Nature communications, 12 (2021), 3307, 18. doi: 10.1038/s41467-021-23165-1
doiwww.nature.comdoi.orgfulir.irb.hr
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Oršolić, Davor ; Pehar, Vesna ; Šmuc, Tomislav ; Stepanić, Višnja | Comprehensive machine learning based study of the chemical space of herbicides // Scientific reports, 11 (2021), 11479, 12. doi: 10.1038/s41598-021-90690-w
doiwww.nature.comdoi.orgfulir.irb.hr
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Fernandes, Sofia ; Fanaee‑T, Hadi ; Gama, João ; Tišljarić, Leo ; Šmuc, Tomislav | WINTENDED: WINdowed TENsor decomposition for Densification Event Detection in time-evolving networks // Machine learning, 112 (2023), 2; 459-481. doi: 10.1007/s10994-021-05979-8
doiwww.researchgate.netlink.springer.com
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Jović, Ozren ; Šmuc, Tomislav | Combined Machine Learning and Molecular Modelling Workflow for the Recognition of Potentially Novel Fungicides // Molecules, 25 (2020), 9; 2198, 24. doi: 10.3390/molecules25092198
doiwww.mdpi.comfulir.irb.hr
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Mihelčić, Matej ; Šmuc, Tomislav ; Supek, Fran | Patterns of diverse gene functions in genomic neighborhoods predict gene function and phenotype // Scientific reports, 9 (2019), 1; 19537, 16. doi: 10.1038/s41598-019-55984-0
doiwww.biorxiv.orgwww.nature.com
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Kulikovskikh, Ilona ; Lipić, Tomislav ; Šmuc, Tomislav | From Knowledge Transmission to Knowledge Construction: A Step towards Human-Like Active Learning // Entropy (Basel. Online), 22 (2020), 8; 906, 11. doi: 10.3390/e22080906
doiwww.mdpi.comfulir.irb.hr
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Kulikovskikh, Ilona ; Prokhorov, Sergej ; Lipić, Tomislav ; Legović, Tarzan ; Šmuc, Tomislav | BioGD: Bio-inspired robust gradient descent // PLoS One, 14 (2019), 7; e0219004, 19. doi: 10.1371/journal.pone.0219004
doijournals.plos.org
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Piškorec, Matija ; Šmuc, Tomislav ; Šikić, Mile | Disentangling Sources of Influence in Online Social Networks // IEEE access, 7 (2019), 131692-131704. doi: 10.1109/access.2019.2940762
doiieeexplore.ieee.orgdoi.orgfulir.irb.hr
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Mihelčić, Matej ; Šmuc, Tomislav | Targeted and contextual redescription set exploration // Machine learning, 107 (2018), 11; 1809-1846. doi: 10.1007/s10994-018-5738-9
doilink.springer.com
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Vidulin, Vedrana ; Šmuc, Tomislav ; Džeroski, Sašo ; Supek, Fran | The evolutionary signal in metagenome phyletic profiles predicts many gene functions // Microbiome, 6 (2018), 1; 129, 21. doi: 10.1186/s40168-018-0506-4
doimicrobiomejournal.biomedcentral.comlink.springer.com
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Mihelčić, Matej ; Džeroski, Sašo ; Lavrač, Nada ; Šmuc, Tomislav | Redescription mining augmented with random forest of multi-target predictive clustering trees // Journal of intelligent information systems, 50 (2018), 1; 63-96. doi: 10.1007/s10844-017-0448-5
doilink.springer.com
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(Alzheimer’s Disease Neuroimaging Initiative) Mihelčić, Matej ; Šimić, Goran ; Babić Leko, Mirjana ; Lavrač, Nada ; Džeroski, Sašo ; Šmuc, Tomislav | Using redescription mining to relate clinical and biological characteristics of cognitively impaired and Alzheimer's disease patients // PLoS One, 12 (2017), 10; 1-35. doi: 10.1371/journal.pone.0187364
doijournals.plos.org
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Mihelčić, Matej ; Džeroski, Sašo ; Lavrač, Nada ; Šmuc, Tomislav | A framework for redescription set construction // Expert systems with applications, 68 (2017), 196-215. doi: 10.1016/j.eswa.2016.10.012
doiwww.sciencedirect.com
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Brbić, Maria ; Piškorec, Matija ; Vidulin, Vedrana ; Kriško, Anita ; Šmuc, Tomislav ; Supek, Fran | The landscape of microbial phenotypic traits and associated genes // Nucleic acids research, 44 (2016), 21; 10074-10090. doi: 10.1093/nar/gkw964
doinar.oxfordjournals.orgdoi.org
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Vidulin, Vedrana ; Šmuc, Tomislav ; Supek, Fran | Extensive Complementarity between Gene Function Prediction Methods // Bioinformatics, 32 (2016), 23; 3645-3653. doi: 10.1093/bioinformatics/btw532
doibioinformatics.oxfordjournals.org
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Antulov-Fantulin, Nino ; Lančić, Alen ; Šmuc, Tomislav ; Štefančić, Hrvoje ; Šikić, Mile | Identification of Patient Zero in Static and Temporal Networks : Robustness and Limitations // Physical review letters, 114 (2015), 248701-1-248701-5. doi: 10.1103/PhysRevLett.114.248701
doijournals.aps.orgdx.doi.org
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Piškorec, Matija ; Antulov-Fantulin, Nino ; Kralj Novak, Petra ; Mozetič, Igor ; Grčar, Miha ; Vodenska, Irena ; Šmuc Tomislav | Cohesiveness in Financial News and its Relation to Market Volatility // Scientific reports, 4 (2014), 5038-1-5038-8. doi: 10.1038/srep05038
doiwww.nature.com
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Levatić, Jurica ; Džeroski, Sašo ; Supek, Fran ; Šmuc, Tomislav. | Semi-Supervised Learning for Quantitative Structure- Activity Modeling // Informatica (Ljubljana), 37 (2013), 2; 173-179
www.informatica.sifulir.irb.hr
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Radivojac, Predrag ; ... ; Škunca, Nives ; Supek, Fran ; Bošnjak, Matko ; ... ; Šmuc, Tomislav ; ... ; Friedberg, Iddo | A large-scale evaluation of computational protein function prediction // Nature methods, 10 (2013), 3; 221-227. doi: 10.1038/nmeth.2340
doiwww.nature.com
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Gamberger, Dragan ; Šmuc, Tomislav | Good Governance Problems and Recent Financial Crises in Some EU Countries // Economics : The Open Access Open-Assessment E-Journal, 7 (2013), 201341, 21. doi: 10.5018/economics-ejournal.ja.2013-41
doiwww.economics-ejournal.orgfulir.irb.hr
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Levatić, Jurica ; Ćurak, Jasna ; Kralj, Marijeta ; Šmuc, Tomislav ; Osmak, Maja ; Supek, Fran | Accurate Models for P-gp Drug Recognition Induced from a Cancer Cell Line Cytotoxicity Screen // Journal of medicinal chemistry, 56 (2013), 14; 5691-5708. doi: 10.1021/jm400328s
doipubs.acs.org
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Šimpraga, Miljenko ; Šmuc, Tomislav ; Matanović, Krešimir ; Radin, Lada ; Shek-Vugrovečki, Ana ; Ljubičić, Iva ; Vojta, Aleksandar | Reference intervals for organically raised sheep: Effects of breed, location and season on hematological and biochemical parameters // Small ruminant research, 112 (2013), 1-3; 1-6. doi: 10.1016/j.smallrumres.2012.11.032
doidx.doi.orgwww.sciencedirect.com
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Škunca, Nives ; Bošnjak, Matko ; Kriško, Anita ; Panov, Panče ; Džeroski, Sašo ; Šmuc, Tomislav ; Supek, Fran | Phyletic Profiling With Cliques of Orthologs is Enhanced by Signatures of Paralogy Relationships // Plos computational biology, 9 (2012), 1; e100285, 14. doi: 10.1371/journal.pcbi.1002852
doigorbi.irb.hrjournals.plos.orgfulir.irb.hr
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Budimir, Ana ; Šmuc, Tomislav ; Weitner, Tin ; Batinić-Haberle, Ines ; Biruš, Mladen | Thermodynamics and electrochemistry of manganese ortho-tetrakis(N-n-butylpyridinium-2-yl)porphyrin in aqueous solutions // Journal of coordination chemistry, 63 (2010), 14/16; 2750-2765. doi: 10.1080/00958972.2010.502571
doiwww.tandfonline.com
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Rios-Morales, Ruth ; Gamberger, Dragan ; Jenkins, Ian ; Šmuc, Tomislav ; | Modelling investment in the tourism industry using the World Bank's good governance indicators // Journal of modelling in management, 6 (2011), 3; 279-296. doi: 10.1108/17465661111183694
doiwww.emeraldinsight.com
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Supek, Fran ; Bošnjak, Matko ; Škunca, Nives ; Šmuc, Tomislav | REVIGO summarizes and visualizes long lists of Gene Ontology terms // PLoS One, 6 (2011), 7; e21800-e21800. doi: 10.1371/journal.pone.0021800
doiwww.plosone.orgfulir.irb.hr
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Smole, Zlatko ; Nikolić, Nela ; Supek, Fran ; Šmuc, Tomislav ; Sbalzarini, Ivo ; Kriško, Anita | Proteome sequence features carry signatures of the environmental niche of prokaryotes // Bmc evolutionary biology, 11 (2011), 26, 10. doi: 10.1186/1471-2148-11-26
doiwww.ncbi.nlm.nih.govwww.biomedcentral.comdoi.org
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Supek, Fran ; Šumanovac Ramljak, Tatjana ; Marjanović, Marko ; Buljubašić, Maja ; Kragol, Goran ; Ilić, Nataša ; Šmuc, Tomislav ; Zahradka, Davor ; Mlinarić-Majerski, Kata ; Kralj, Marijeta | Could LogP be a principal determinant of biological activity in 18-crown-6 ethers? Synthesis of biologically active adamantane-substituted diaza-crowns // European journal of medicinal chemistry, 46 (2011), 8; 3444-3454. doi: 10.1016/j.ejmech.2011.05.009
doiwww.ncbi.nlm.nih.govwww.sciencedirect.comdx.doi.org
Krstačić, Goran ; Gambberger, Dragan ; Šmuc, Tomislav ; Krstačić, Antonija | Some R-R interval based paroxysmal atrial fibrillation predictors // Computers in cardiology, 28 (2001), 409-412
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Krstačić, Goran ; Gamberger, Dragan ; Krstačić, Antonija ; Šmuc, Tomislav ; Miličić, Davor | The Chaos Theory and Non-linear Dynamics in Heart Rate Variability in Patients with Heart Failure // Computers in cardiology, 35 (2008), 957-959
cinc.mit.edu
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Čož-Rakovac, Rozelinda ; Lisičić, Duje ; Šmuc, Tomislav ; Topić Popović, Natalija ; Strunjak-Perović, Ivančica ; Jadan, Margita ; Tadić, Zoran ; Jug Dujaković, Jurica | Classification Modelling of Physiological Stages in Captive Balkan Whip Snakes Using Blood Biochemistry Parameters // Journal of herpetology, 45 (2011), 4; 525-529
www.bioone.orgdx.doi.org
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Ester, Katja ; Supek, Fran ; Majsec, Kristina ; Marjanović, Marko ; Lembo, David ; Donalisio, Manuela ; Šmuc, Tomislav ; Jarak, Ivana ; Karminski-Zamola, Grace ; Kralj, Marijeta | Putative mechanisms of antitumor activity of cyano-substituted heteroaryles in HeLa cells // Investigational new drugs, 30 (2012), 2; 450-467. doi: 10.1007/s10637-010-9571-7
doiwww.springerlink.com
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Supek, Fran ; Šmuc, Tomislav | On Relevance of Codon Usage to Expression of Synthetic and Natural Genes in Escherichia coli // Genetics, 185 (2010), 1129-1134. doi: 10.1534/genetics.110.115477
doiwww.genetics.orgwww.genetics.org
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Supek, Fran ; Škunca, Nives ; Repar, Jelena ; Vlahoviček, Kristian ; Šmuc, Tomislav | Translational Selection Is Ubiquitous in Prokaryotes // PLOS genetics, 6 (2010), 6; e1001004, 13. doi: 10.1371/journal.pgen.1001004
doiwww.plosgenetics.orgjournals.plos.org
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Trontl, Krešimir ; Pevec, Dubravko ; Šmuc, Tomislav | Machine learning of the reactor core loading pattern critical parameters // Science and technology of nuclear installations, 2008 (2008), 695153, 7. doi: 10.1155/2008/695153
doiwww.hindawi.comfulir.irb.hr
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Gredičak, Matija ; Supek, Fran ; Kralj, Marijeta, Majer, Zsuzsa ; Hollosi, Miklos ; Šmuc, Tomislav ; Mlinarić-Majerski, Kata ; Horvat, Štefica | Computational structure-activity study directs synthesis of novel antitumor enkephalin analogs // Amino acids (Wien), 38 (2010), 4; 1185-1191. doi: 10.1007/s00726-009-0329-5
doiwww.springerlink.comdoi.org
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Rios-Morales, Ruth ; Gamberger, Dragan ; Šmuc, Tomislav ; Azuaje, Francisco | Innovative methods in assessing political risk for business internationalization // Research in international business and finance, 23 (2009), 144-156. doi: 10.1016/j.ribaf.2008.03.011
doiwww.sciencedirect.comdoi.org
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Čož-Rakovac, Rozelinda ; Topić Popović, Natalija ; Šmuc, Tomislav ; Strunjak-Perović, Ivančica ; Jadan, Margita | Classification accuracy of algorithms for blood chemistry data of three aquaculture-influenced marine fish species // Fish physiology and biochemistry, 35 (2009), 4; 641-647. doi: 10.1007/s10695-008-9288-0
doiwww.springerlink.com
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Supek, Fran ; Kralj, Marijeta ; Marjanović, Marko ; Šuman, Lidija ; Šmuc, Tomislav ; Krizmanić, Irena ; Žinić, Biserka | Atypical cytostatic mechanism of N -1-sulfonylcytosine derivatives determined by in vitro screening and computational analysis // Investigational new drugs, 26 (2008), 2; 97-110. doi: 10.1007/s10637-007-9084-1
doilink.springer.com
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Čož-Rakovac, Rozelinda ; Strunjak-Perović, Ivančica ; Topić Popović, Natalija ; Hacmanjek, Mato ; Šmuc, Tomislav ; Jadan, Margita ; Lipej, Zoran ; Homen, Zlatko | Cage culture effects on mullets (Mugilidae) liver histology and blood chemistry profile // Journal of fish biology, 72 (2008), 10; 2557-2569. doi: 10.1111/j.1095-8649.2008.01865.x
doionlinelibrary.wiley.com
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Čož-Rakovac, Rozelinda ; Šmuc, Tomislav ; Topić Popović, Natalija ; Strunjak-Perović, Ivančica ; Hacmanjek, Mato ; Jadan, Margita | Novel methods for assesing fish blood biochemical data // Journal of applied ichthyology, 24 (2008), 1; 77-80. doi: 10.1111/j.1439-0426.2007.01041.x
doionlinelibrary.wiley.com
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Trontl, Krešimir ; Šmuc, Tomislav ; Pevec, Dubravko | Support vector regression model for the estimation of γ -ray buildup factors for multi-layer shields // Annals of nuclear energy, 34 (2007), 12; 939-952-x
dx.doi.org
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Supek, Fran ; Peharec, Petra ; Krsnik-Rasol, Marijana ; Šmuc, Tomislav | Enhanced analytical power of SDS-PAGE using machine learning algorithms // Proteomics, 8 (2008), 1; 28-31. doi: 10.1002/pmic.200700555
doiwww.ncbi.nlm.nih.govonlinelibrary.wiley.com
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Marjanović, Marko ; Kralj, Marijeta ; Supek, Fran ; Frkanec, Leo ; Piantanida, Ivo ; Šmuc, Tomislav ; Tušek-Božić, Ljerka | Antitumor potential of crown ethers: structure activity relationships, cell cycle disturbances and cell death studies of a series of ionophores // Journal of medicinal chemistry, 50 (2007), 5; 1007-1018. doi: 10.1021/jm061162u
doipubs.acs.org
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Jelaković, Bojan ; Dika, Živka ; Kos, Jelena ; Pećin, Ivan ; Laganović, Mario ; Jovanović, Aleksandar ; Šmuc, Tomislav ; Gamberger, Dragan ; Kuzmanić, Duško | Liječenje i kontrola arterijske hipertenzije u Hrvatskoj. BEL-AH istraživanje // Liječnički vjesnik : glasilo Hrvatskoga liječničkog zbora, 128 (2006), 11-12; 329-333
lijecnicki-vjesnik.hlz.hr
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Malenica, Mislav ; Šmuc, Tomislav ; Šnajder, Jan ; Dalbelo Bašić, Bojana | Language Morphology Offset: Text Classification on a Croatian-English Parallel Corpus // Information processing & management, 44 (2008), 1; 325-339. doi: 10.1016/j.ipm.2006.12.007
doiwww.sciencedirect.com
Supek, Fran ; Šmuc, Tomislav ; Lučić, Bono | A prototype structure-activity relationship model based on National Cancer Institute cell line screening data // Periodicum biologorum, 107 (2005), 4; 451-455-x
Marić, Ivan ; Galović, Antun ; Šmuc, Tomislav | Calculation of natural gas isentropic exponent // Flow measurement and instrumentation, 16 (2005), 1; 13-20-x
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Pavlović, Mladen ; Šantić, Branko ; Desnica-Franković, Dunja Ida ; Radić, Nikola ; Šmuc, Tomislav ; Desnica, Uroš V. | The Impact of Deep Levels on Photocurrent Transients in Semi-Insulating GaAs // Journal of Electronic Materials, 32 (2003), 10; 1100-1106. doi: 10.1007/s11664-003-0094-2
doi
Grošev, Darko ; Medvedec, Mario ; Lončarić, Srećko ; Žuvić, Marijan ; Dodig, Damir ; Šmuc, Tomislav | Determination of small objects from pinhole scintigrams // Nuclear medicine communications, 19 (1998), 7; 679-688