Machine Learning, Faculty of Science, Department of Mathematics, Zagreb

1.1 Matija Piškorec, Nino Antulov-Fantulin, Petra Kralj Novak, Igor Mozetič, Miha Grčar, Irena Vodenska, T. Šmuc (2014), Cohesiveness in Financial News and its Relation to Market Volatility, Scientific Reports,  http://dx.doi.org/10.1038/srep05038.

1.2 N. Antulov-Fantulin, T. Šmuc, A. Lančić, H. Štefančić, M. Šikić, (2015) Identification of patient zero in static and temporal networks - robustness and limitations, Phys. Rev. Lett., 114(24), 248701.

1.3 M. Mihelčić, N. Lavrač, S. Džeroski, T. Šmuc, (2017) A framework for redescription set construction, Expert Systems With Applications 68 196–215. 

1.4 M. Mihelčić, S. Džeroski, N. Lavrač, T. Šmuc, (2017) Redescription mining augmented with random forest of predictive clustering trees, Journal of Intelligent Information Systems, 1-34. doi:10.1007/s10844-017-0448-5.

1.5 M. Mihelčić, G. Šimić, M. L. Babić, N. Lavrač, S. Džeroski, T. Šmuc (2017) Using redescription mining to relate clinical and biological characteristics of cognitively impaired and Alzheimer’s disease patients. PLOS ONE 12(10).

1.6   M. Mihelčić, T. Šmuc, (2018), Targeted and contextual redescription set exploration,  Machine Learning, https://doi.org/10.1007/s10994-018-5738-9

1.7   V., Vidulin, T. Šmuc, S. Džeroski, F. Supek, The evolutionary signal in metagenome phyletic
profiles predicts many gene functions, Microbiome  (2018) 6:129,          https://doi.org/10.1186/s40168-018-0506-4

1.8 V Vidulin, T Šmuc, F Supek, (2016). Extensive Complementarity between Gene Function Prediction Methods, Bioinformatics, 1367-4803.

1.9 M Brbić, M Piškorec, V Vidulin, A Kriško, T Šmuc and F Supek, (2016), The landscape of microbial phenotypic traits and associated genes, Nucleic acids research (0305-1048).

1.10P. Radivojac et al., (2013) A large-scale evaluation of computational protein function prediction; Nature Methods 10(3):221.

1.11Škunca N, Bošnjak M,  Kriško A, Panov P, Džeroski  S, Šmuc T, Supek F. (2012). Phyletic Profiling With Cliques of Orthologs Is Enhanced by Signatures of Paralogy  Relationships, PLoS Computational Biology.

1.12Supek F,  Bošnjak M, Škunca N, Šmuc T, (2011), REVIGO summarizes and visualizes long lists  of Gene Ontology  terms ,  PloS One,  (7):e21800. doi:10.1371/journal.pone.

Zbornik radova s konferencije

• Proceedings of the ECML-PKDD 2011 Workshop on Discovery Challenge / Šmuc, Tomislav ; Antulov-Fantulin, Nino ; Morzy, Mikołaj (ur.) | Zagreb: Institut Ruđer Bošković, 2011

  ceur-ws.org

Izvorni znanstveni rad

• Kašner, M. ; Jelaković, Bojan ; Laganović, Mario ; Željković, T. ; Kuzmanić, Duško ; Boršo, Gordana ; Šmuc, Tomislav ; Gamberger, Dragan ; Rončević, P. | Serum uric-acid is related to metabolic disturbance and associated to serum aldosterone in essential hypertension // Frontiers in Coronary Artery Disease : Proceedings of the 5th International Congress on Coronary Artery Disease / Lewis, B.S. ; Halon, D.A. ; Flugelman, M.Y. et al. (ur.). Bolonja: Monduzzi Editore, 2003. str. 457-460

• Trontl, Krešimir ; Šmuc, Tomislav ; Pevec, Dubravko | Learning Support Vector Regression Models for Fast Radiation Dose Rate // Machine Learning Research Progress / Peters, Hannah ; Vogel, Mia (ur.). New York (NY): Nova Science Publishers, 2010. str. 427-462

• Supek, Fran ; Šmuc, Tomislav | Distance Measures and Machine Learning Approaches for Codon Usage Analyses // Codon Evolution - Mechanisms and Models / Cannarozzi, Gina ; Schneider, Adrian (ur.). Oxford: Oxford University Press, 2011. str. 229-244

  www.codonbook.comukcatalogue.oup.com

• Mihelčić, Matej ; Džeroski, Sašo ; Šmuc, Tomislav | Extending Redescription Mining to Multiple Views // 21st International Conference, DS 2018, Limassol, Cyprus, October 29–31, 2018, Proceedings / Soldatova, Larisa ; Vanschoren, Joaquin ; Papadopoulos, George et al. (ur.). Cham: Springer, 2018. str. 292-307 doi: 10.1007/978-3-030-01771-2_19

  doilink.springer.com

• Mihelčić, Matej ; Šmuc, Tomislav | Rules, Subgroups and Redescriptions as Features in Classification Tasks // Machine Learning and Principles and Practice of Knowledge Discovery in Databases. International Workshops of ECML PKDD 2022. / Koprinska, Irena ; Mignone, Paolo ; Guidotti Riccardo et al. (ur.). Cham: Springer, 2023. str. 248-260 doi: 10.1007/978-3-031-23618-1_17

  doilink.springer.com

Stručni rad

• Laganović, Mario ; Jelaković, Bojan ; Kuzmanić, Dušan ; Boršo, Gordana ; Rončević, Tomislav ; Vdović, M. ; Željković, T. ; Kašner, M. ; Šmuc, Tomislav ; Gamberger, Dragan | Low birth does not influence blood pressure through reduced kidney volume // Frontiers in Coronary Artery Disease : Proceedings of the 5th International Congress on Coronary Artery Disease / Lewis, B.S. ; Halon, D.A. ; Flugelman, M.Y. et al. (ur.). Bolonja: Monduzzi Editore, 2003. str. 461-468

• Mihelčić, Matej ; Bošnjak Matko ; Antulov-Fantulin Nino ; Šmuc Tomislav | Constructing Recommender Systems in RapidMiner // RapidMiner / Hofmann, Markus ; Klinkenberg, Ralf (ur.). New York (NY): Chapman and Hall/CRC, 2013. str. 119-143 doi: 10.1201/b16023

  doi

Izvorni znanstveni rad

• Grošev, Darko ; Medvedec, Mario ; Lončarić, Srećko ; Žuvić, Marijan ; Dodig, Damir ; Šmuc, Tomislav | Determination of small objects from pinhole scintigrams // Nuclear medicine communications, 19 (1998), 7; 679-688

• Pavlović, Mladen ; Šantić, Branko ; Desnica-Franković, Dunja Ida ; Radić, Nikola ; Šmuc, Tomislav ; Desnica, Uroš V. | The Impact of Deep Levels on Photocurrent Transients in Semi-Insulating GaAs // Journal of Electronic Materials, 32 (2003), 10; 1100-1106. doi: 10.1007/s11664-003-0094-2

  doi

• Marić, Ivan ; Galović, Antun ; Šmuc, Tomislav | Calculation of natural gas isentropic exponent // Flow measurement and instrumentation, 16 (2005), 1; 13-20-x

• Supek, Fran ; Šmuc, Tomislav ; Lučić, Bono | A prototype structure-activity relationship model based on National Cancer Institute cell line screening data // Periodicum biologorum, 107 (2005), 4; 451-455-x

• Malenica, Mislav ; Šmuc, Tomislav ; Šnajder, Jan ; Dalbelo Bašić, Bojana | Language Morphology Offset: Text Classification on a Croatian-English Parallel Corpus // Information processing & management, 44 (2008), 1; 325-339. doi: 10.1016/j.ipm.2006.12.007

  doiwww.sciencedirect.com

• Jelaković, Bojan ; Dika, Živka ; Kos, Jelena ; Pećin, Ivan ; Laganović, Mario ; Jovanović, Aleksandar ; Šmuc, Tomislav ; Gamberger, Dragan ; Kuzmanić, Duško | Liječenje i kontrola arterijske hipertenzije u Hrvatskoj. BEL-AH istraživanje // Liječnički vjesnik : glasilo Hrvatskoga liječničkog zbora, 128 (2006), 11-12; 329-333

  lijecnicki-vjesnik.hlz.hr

• Marjanović, Marko ; Kralj, Marijeta ; Supek, Fran ; Frkanec, Leo ; Piantanida, Ivo ; Šmuc, Tomislav ; Tušek-Božić, Ljerka | Antitumor potential of crown ethers: structure activity relationships, cell cycle disturbances and cell death studies of a series of ionophores // Journal of medicinal chemistry, 50 (2007), 5; 1007-1018. doi: 10.1021/jm061162u

  doipubs.acs.org

• Supek, Fran ; Peharec, Petra ; Krsnik-Rasol, Marijana ; Šmuc, Tomislav | Enhanced analytical power of SDS-PAGE using machine learning algorithms // Proteomics, 8 (2008), 1; 28-31. doi: 10.1002/pmic.200700555

  doiwww.ncbi.nlm.nih.govonlinelibrary.wiley.com

• Trontl, Krešimir ; Šmuc, Tomislav ; Pevec, Dubravko | Support vector regression model for the estimation of γ -ray buildup factors for multi-layer shields // Annals of nuclear energy, 34 (2007), 12; 939-952-x

  dx.doi.org

• Čož-Rakovac, Rozelinda ; Šmuc, Tomislav ; Topić Popović, Natalija ; Strunjak-Perović, Ivančica ; Hacmanjek, Mato ; Jadan, Margita | Novel methods for assesing fish blood biochemical data // Journal of applied ichthyology, 24 (2008), 1; 77-80. doi: 10.1111/j.1439-0426.2007.01041.x

  doionlinelibrary.wiley.com

• Čož-Rakovac, Rozelinda ; Strunjak-Perović, Ivančica ; Topić Popović, Natalija ; Hacmanjek, Mato ; Šmuc, Tomislav ; Jadan, Margita ; Lipej, Zoran ; Homen, Zlatko | Cage culture effects on mullets (Mugilidae) liver histology and blood chemistry profile // Journal of fish biology, 72 (2008), 10; 2557-2569. doi: 10.1111/j.1095-8649.2008.01865.x

  doionlinelibrary.wiley.com

• Supek, Fran ; Kralj, Marijeta ; Marjanović, Marko ; Šuman, Lidija ; Šmuc, Tomislav ; Krizmanić, Irena ; Žinić, Biserka | Atypical cytostatic mechanism of N -1-sulfonylcytosine derivatives determined by in vitro screening and computational analysis // Investigational new drugs, 26 (2008), 2; 97-110. doi: 10.1007/s10637-007-9084-1

  doilink.springer.com

• Čož-Rakovac, Rozelinda ; Topić Popović, Natalija ; Šmuc, Tomislav ; Strunjak-Perović, Ivančica ; Jadan, Margita | Classification accuracy of algorithms for blood chemistry data of three aquaculture-influenced marine fish species // Fish physiology and biochemistry, 35 (2009), 4; 641-647. doi: 10.1007/s10695-008-9288-0

  doiwww.springerlink.com

• Rios-Morales, Ruth ; Gamberger, Dragan ; Šmuc, Tomislav ; Azuaje, Francisco | Innovative methods in assessing political risk for business internationalization // Research in international business and finance, 23 (2009), 144-156. doi: 10.1016/j.ribaf.2008.03.011

  doiwww.sciencedirect.comdoi.org

• Gredičak, Matija ; Supek, Fran ; Kralj, Marijeta, Majer, Zsuzsa ; Hollosi, Miklos ; Šmuc, Tomislav ; Mlinarić-Majerski, Kata ; Horvat, Štefica | Computational structure-activity study directs synthesis of novel antitumor enkephalin analogs // Amino acids (Wien), 38 (2010), 4; 1185-1191. doi: 10.1007/s00726-009-0329-5

  doiwww.springerlink.comdoi.org

• Trontl, Krešimir ; Pevec, Dubravko ; Šmuc, Tomislav | Machine learning of the reactor core loading pattern critical parameters // Science and technology of nuclear installations, 2008 (2008), 695153, 7. doi: 10.1155/2008/695153

  doiwww.hindawi.comfulir.irb.hr

• Supek, Fran ; Škunca, Nives ; Repar, Jelena ; Vlahoviček, Kristian ; Šmuc, Tomislav | Translational Selection Is Ubiquitous in Prokaryotes // PLOS genetics, 6 (2010), 6; e1001004, 13. doi: 10.1371/journal.pgen.1001004

  doiwww.plosgenetics.orgjournals.plos.org

• Supek, Fran ; Šmuc, Tomislav | On Relevance of Codon Usage to Expression of Synthetic and Natural Genes in Escherichia coli // Genetics, 185 (2010), 1129-1134. doi: 10.1534/genetics.110.115477

  doiwww.genetics.orgwww.genetics.org

• Ester, Katja ; Supek, Fran ; Majsec, Kristina ; Marjanović, Marko ; Lembo, David ; Donalisio, Manuela ; Šmuc, Tomislav ; Jarak, Ivana ; Karminski-Zamola, Grace ; Kralj, Marijeta | Putative mechanisms of antitumor activity of cyano-substituted heteroaryles in HeLa cells // Investigational new drugs, 30 (2012), 2; 450-467. doi: 10.1007/s10637-010-9571-7

  doiwww.springerlink.com

• Čož-Rakovac, Rozelinda ; Lisičić, Duje ; Šmuc, Tomislav ; Topić Popović, Natalija ; Strunjak-Perović, Ivančica ; Jadan, Margita ; Tadić, Zoran ; Jug Dujaković, Jurica | Classification Modelling of Physiological Stages in Captive Balkan Whip Snakes Using Blood Biochemistry Parameters // Journal of herpetology, 45 (2011), 4; 525-529

  www.bioone.orgdx.doi.org

• Krstačić, Goran ; Gamberger, Dragan ; Krstačić, Antonija ; Šmuc, Tomislav ; Miličić, Davor | The Chaos Theory and Non-linear Dynamics in Heart Rate Variability in Patients with Heart Failure // Computers in cardiology, 35 (2008), 957-959

  cinc.mit.edu

• Krstačić, Goran ; Gambberger, Dragan ; Šmuc, Tomislav ; Krstačić, Antonija | Some R-R interval based paroxysmal atrial fibrillation predictors // Computers in cardiology, 28 (2001), 409-412

• Supek, Fran ; Šumanovac Ramljak, Tatjana ; Marjanović, Marko ; Buljubašić, Maja ; Kragol, Goran ; Ilić, Nataša ; Šmuc, Tomislav ; Zahradka, Davor ; Mlinarić-Majerski, Kata ; Kralj, Marijeta | Could LogP be a principal determinant of biological activity in 18-crown-6 ethers? Synthesis of biologically active adamantane-substituted diaza-crowns // European journal of medicinal chemistry, 46 (2011), 8; 3444-3454. doi: 10.1016/j.ejmech.2011.05.009

  doiwww.ncbi.nlm.nih.govwww.sciencedirect.comdx.doi.org

• Smole, Zlatko ; Nikolić, Nela ; Supek, Fran ; Šmuc, Tomislav ; Sbalzarini, Ivo ; Kriško, Anita | Proteome sequence features carry signatures of the environmental niche of prokaryotes // Bmc evolutionary biology, 11 (2011), 26, 10. doi: 10.1186/1471-2148-11-26

  doiwww.ncbi.nlm.nih.govwww.biomedcentral.comdoi.org

• Supek, Fran ; Bošnjak, Matko ; Škunca, Nives ; Šmuc, Tomislav | REVIGO summarizes and visualizes long lists of Gene Ontology terms // PLoS One, 6 (2011), 7; e21800-e21800. doi: 10.1371/journal.pone.0021800

  doiwww.plosone.orgfulir.irb.hr

• Rios-Morales, Ruth ; Gamberger, Dragan ; Jenkins, Ian ; Šmuc, Tomislav ; | Modelling investment in the tourism industry using the World Bank's good governance indicators // Journal of modelling in management, 6 (2011), 3; 279-296. doi: 10.1108/17465661111183694

  doiwww.emeraldinsight.com

• Budimir, Ana ; Šmuc, Tomislav ; Weitner, Tin ; Batinić-Haberle, Ines ; Biruš, Mladen | Thermodynamics and electrochemistry of manganese ortho-tetrakis(N-n-butylpyridinium-2-yl)porphyrin in aqueous solutions // Journal of coordination chemistry, 63 (2010), 14/16; 2750-2765. doi: 10.1080/00958972.2010.502571

  doiwww.tandfonline.com

• Škunca, Nives ; Bošnjak, Matko ; Kriško, Anita ; Panov, Panče ; Džeroski, Sašo ; Šmuc, Tomislav ; Supek, Fran | Phyletic Profiling With Cliques of Orthologs is Enhanced by Signatures of Paralogy Relationships // Plos computational biology, 9 (2012), 1; e100285, 14. doi: 10.1371/journal.pcbi.1002852

  doigorbi.irb.hrjournals.plos.orgfulir.irb.hr

• Šimpraga, Miljenko ; Šmuc, Tomislav ; Matanović, Krešimir ; Radin, Lada ; Shek-Vugrovečki, Ana ; Ljubičić, Iva ; Vojta, Aleksandar | Reference intervals for organically raised sheep: Effects of breed, location and season on hematological and biochemical parameters // Small ruminant research, 112 (2013), 1-3; 1-6. doi: 10.1016/j.smallrumres.2012.11.032

  doidx.doi.orgwww.sciencedirect.com

• Levatić, Jurica ; Ćurak, Jasna ; Kralj, Marijeta ; Šmuc, Tomislav ; Osmak, Maja ; Supek, Fran | Accurate Models for P-gp Drug Recognition Induced from a Cancer Cell Line Cytotoxicity Screen // Journal of medicinal chemistry, 56 (2013), 14; 5691-5708. doi: 10.1021/jm400328s

  doipubs.acs.org

• Gamberger, Dragan ; Šmuc, Tomislav | Good Governance Problems and Recent Financial Crises in Some EU Countries // Economics-The Open Access Open-Assessment E-Journal, 7 (2013), 201341, 21. doi: 10.5018/economics-ejournal.ja.2013-41

  doiwww.economics-ejournal.orgfulir.irb.hr

• Radivojac, Predrag ; ... ; Škunca, Nives ; Supek, Fran ; Bošnjak, Matko ; ... ; Šmuc, Tomislav ; ... ; Friedberg, Iddo | A large-scale evaluation of computational protein function prediction // Nature methods, 10 (2013), 3; 221-227. doi: 10.1038/nmeth.2340

  doiwww.nature.com

• Levatić, Jurica ; Džeroski, Sašo ; Supek, Fran ; Šmuc, Tomislav. | Semi-Supervised Learning for Quantitative Structure- Activity Modeling // Informatica (Ljubljana), 37 (2013), 2; 173-179

  www.informatica.sifulir.irb.hr

• Piškorec, Matija ; Antulov-Fantulin, Nino ; Kralj Novak, Petra ; Mozetič, Igor ; Grčar, Miha ; Vodenska, Irena ; Šmuc Tomislav | Cohesiveness in Financial News and its Relation to Market Volatility // Scientific reports, 4 (2014), 5038-1-5038-8. doi: 10.1038/srep05038

  doiwww.nature.com

• Antulov-Fantulin, Nino ; Lančić, Alen ; Šmuc, Tomislav ; Štefančić, Hrvoje ; Šikić, Mile | Identification of Patient Zero in Static and Temporal Networks : Robustness and Limitations // Physical review letters, 114 (2015), 248701-1-248701-5. doi: 10.1103/PhysRevLett.114.248701

  doijournals.aps.orgdx.doi.org

• Vidulin, Vedrana ; Šmuc, Tomislav ; Supek, Fran | Extensive Complementarity between Gene Function Prediction Methods // Bioinformatics, 32 (2016), 23; 3645-3653. doi: 10.1093/bioinformatics/btw532

  doibioinformatics.oxfordjournals.org

• Brbić, Maria ; Piškorec, Matija ; Vidulin, Vedrana ; Kriško, Anita ; Šmuc, Tomislav ; Supek, Fran | The landscape of microbial phenotypic traits and associated genes // Nucleic acids research, 44 (2016), 21; 10074-10090. doi: 10.1093/nar/gkw964

  doinar.oxfordjournals.orgdoi.org

• Mihelčić, Matej ; Džeroski, Sašo ; Lavrač, Nada ; Šmuc, Tomislav | A framework for redescription set construction // Expert systems with applications, 68 (2017), 196-215. doi: 10.1016/j.eswa.2016.10.012

  doiwww.sciencedirect.com

• (Alzheimer’s Disease Neuroimaging Initiative) Mihelčić, Matej ; Šimić, Goran ; Babić Leko, Mirjana ; Lavrač, Nada ; Džeroski, Sašo ; Šmuc, Tomislav | Using redescription mining to relate clinical and biological characteristics of cognitively impaired and Alzheimer's disease patients // PLoS One, 12 (2017), 10; 1-35. doi: 10.1371/journal.pone.0187364

  doijournals.plos.org

• Mihelčić, Matej ; Džeroski, Sašo ; Lavrač, Nada ; Šmuc, Tomislav | Redescription mining augmented with random forest of multi-target predictive clustering trees // Journal of intelligent information systems, 50 (2018), 1; 63-96. doi: 10.1007/s10844-017-0448-5

  doilink.springer.com

• Vidulin, Vedrana ; Šmuc, Tomislav ; Džeroski, Sašo ; Supek, Fran | The evolutionary signal in metagenome phyletic profiles predicts many gene functions // Microbiome, 6 (2018), 1; 129, 21. doi: 10.1186/s40168-018-0506-4

  doimicrobiomejournal.biomedcentral.comlink.springer.com

• Mihelčić, Matej ; Šmuc, Tomislav | Targeted and contextual redescription set exploration // Machine learning, 107 (2018), 11; 1809-1846. doi: 10.1007/s10994-018-5738-9

  doilink.springer.com

• Piškorec, Matija ; Šmuc, Tomislav ; Šikić, Mile | Disentangling Sources of Influence in Online Social Networks // IEEE access, 7 (2019), 131692-131704. doi: 10.1109/access.2019.2940762

  doiieeexplore.ieee.orgdoi.orgfulir.irb.hr

• Kulikovskikh, Ilona ; Prokhorov, Sergej ; Lipić, Tomislav ; Legović, Tarzan ; Šmuc, Tomislav | BioGD: Bio-inspired robust gradient descent // PLoS One, 14 (2019), 7; e0219004, 19. doi: 10.1371/journal.pone.0219004

  doijournals.plos.org

• Kulikovskikh, Ilona ; Lipić, Tomislav ; Šmuc, Tomislav | From Knowledge Transmission to Knowledge Construction: A Step towards Human-Like Active Learning // Entropy (Basel. Online), 22 (2020), 8; 906, 11. doi: 10.3390/e22080906

  doiwww.mdpi.comfulir.irb.hr

• Mihelčić, Matej ; Šmuc, Tomislav ; Supek, Fran | Patterns of diverse gene functions in genomic neighborhoods predict gene function and phenotype // Scientific reports, 9 (2019), 1; 19537, 16. doi: 10.1038/s41598-019-55984-0

  doiwww.biorxiv.orgwww.nature.com

• Jović, Ozren ; Šmuc, Tomislav | Combined Machine Learning and Molecular Modelling Workflow for the Recognition of Potentially Novel Fungicides // Molecules, 25 (2020), 9; 2198, 24. doi: 10.3390/molecules25092198

  doiwww.mdpi.comfulir.irb.hr

• Fernandes, Sofia ; Fanaee‑T, Hadi ; Gama, João ; Tišljarić, Leo ; Šmuc, Tomislav | WINTENDED: WINdowed TENsor decomposition for Densification Event Detection in time-evolving networks // Machine learning, 112 (2023), 2; 459-481. doi: 10.1007/s10994-021-05979-8

  doiwww.researchgate.netlink.springer.com

• Oršolić, Davor ; Pehar, Vesna ; Šmuc, Tomislav ; Stepanić, Višnja | Comprehensive machine learning based study of the chemical space of herbicides // Scientific reports, 11 (2021), 11479, 12. doi: 10.1038/s41598-021-90690-w

  doiwww.nature.comdoi.orgfulir.irb.hr

• Cichońska, Anna ; Ravikumar, Balaguru ; Allaway, Robert J. ; Wan, Fangping ; Park, Sungjoon ; Isayev, Olexandr ; Li, Shuya ; Mason, Michael ; Lamb, Andrew ; Tanoli, Ziaurrehman et al. | Crowdsourced mapping of unexplored target space of kinase inhibitors // Nature communications, 12 (2021), 3307, 18. doi: 10.1038/s41467-021-23165-1

  doiwww.nature.comdoi.orgfulir.irb.hr

• Matulja, Dario ; Grbčić, Petra ; Bojanić, Krunoslav ; Topić-Popović, Natalija ; Čož-Rakovac, Rozelindra ; Laclef, Sylvain ; Šmuc, Tomislav ; Jović, Ozren ; Marković, Dean ; Pavelić Kraljević, Sandra | Chemical Evaluation, Antioxidant, Antiproliferative, Anti-Inflammatory and Antibacterial Activities of Organic Extract and Semi-Purified Fractions of the Adriatic Sea Fan, Eunicella cavolini // Molecules, 26 (2021), 19; 5751, 21. doi: 10.3390/molecules26195751

  doiwww.mdpi.comfulir.irb.hrdoi.org

• Vlainić, Josipa ; Jović, Ozren ; Kosalec, Ivan ; Vugrek, Oliver ; Čoz-Rakovac, Rozelindra ; Šmuc, Tomislav | In Vitro Confirmation of Siramesine as a Novel Antifungal Agent with In Silico Lead Proposals of Structurally Related Antifungals // Molecules, 26 (2021), 12; 3504, 17. doi: 10.3390/molecules26123504

  doiwww.mdpi.comfulir.irb.hr

• Jović, Ozren ; Šmuc, Tomislav | Search for Novel Lead Inhibitors of Yeast Cytochrome bc1, from Drugbank and COCONUT // Molecules, 26 (2021), 14; 4323, 21. doi: 10.3390/ molecules26144323

  doiwww.mdpi.comdoi.orgfulir.irb.hr

• Mihelčić, Matej ; Šmuc, Tomislav | Approaches for Multi-View Redescription Mining // IEEE access, 9 (2021), 19356-19378. doi: 10.1109/access.2021.3054245

  doiieeexplore.ieee.orgieeexplore.ieee.orgfulir.irb.hr

• Zhou, Naihui ; Jiang, Yuxiang ; Bergquist, Timothy R. ; Lee, Alexandra J. ; Kacsoh, Balint Z. ; Crocker, Alex W. ; Lewis, Kimberley A. ; Georghiou, George ; Nguyen, Huy N. ; Hamid, Md Nafiz et al. | The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens // Genome biology, 20 (2019), 1; 244, 23. doi: 10.1186/s13059-019-1835-8

  doigenomebiology.biomedcentral.com

Stručni rad

• Jelaković, B ; Željković-Vrkić, T ; Pećin, I ; Dika, Ž ; Jovanović, A ; Podobnik, D ; Šmuc, T ; Gamberger, D ; Katić, K ; Kašner, M et al. | Arterial hypertension in Croatia - EH-UH study results // Acta medica Croatica, 61 (2007), 287-292

Pregledni rad (stručni)

• Ahel, Marijan ; Antičić, Tome ; Balog, Tihomir ; Bilić, Nevenko ; Guberina, Branko ; Katušić Hećimović, Silva ; Jerić, Ivanka ; Klanjšček, Tin ; Legović, Tarzan ; Musić, Svetozar et al. | The Ruder Boskovic Institute – Today and Tomorrow // Periodicum biologorum, 112 (2010), 4; 369-374

  hrcak.srce.hr

Izvorni znanstveni rad

• Bernnat, Wolfgang ; Lutz, Dietrich ; Pevec, Dubravko ; Šmuc, Tomislav | Generation of group constants for NPP Krško using RSYST code package // Proceedings of International Conference : Nuclear Option in Countries with Small and Medium Electricity Grid / Knapp, Vladimir ; Čavlina, Nikola (ur.). Zagreb: Hrvatsko nuklearno društvo, 1996. str. 463-470

• Baće, Mile ; Pevec, Dubravko ; Šmuc, Tomislav | Impact of burnup credit on the NPP Krško spent fuel pool criticality // Proceedings of the 4th Regional Meeting : Nuclear Energy in Central Europe / Maučec, M. (ur.). Ljubljana: Nuclear Society of Slovenia, 1997. str. 1-7

• Baće, Mile ; Pevec, Dubravko ; Šmuc, Tomislav | Impact of Burnup on the NPP Krško Spent Fuel Pool Criticality // Proceedings of 4th Regional Meeting Nuclear Energy in Central Europe / Mavko, Borut ; Cizelj, Leon (ur.). Nuclear Society of Slovenia, 1997. str. 331-337-x

• Bilić, Tea ; Pevec, Dubravko ; Šmuc, Tomislav | Investigating a possibility to implement 24-month cycle in NPP Krško // Proceedings of the 5th Regional Meeting : Nuclear Energy in Central Europe / Ravnik, M. ; Jenčić, I. ; Žagar, T. (ur.). Ljubljana: Nuclear Society of Slovenia, 1998. str. 107-114

• Trontl, Krešimir ; Baće, Mile ; Šmuc, Tomislav | Incorporation of multi-layer option into QAD-CGGP code // Proceedings of the 5th Regional Meeting : Nuclear Energy in Central Europe / Ravnik, M. ; Jenčić, I. ; Žagar, T. (ur.). Ljubljana: Nuclear Society of Slovenia, 1998. str. 139-146-x

• Šmuc, Tomislav ; Pevec, Dubravko ; Bilić, Tea | Equilibrium cycles of NPP Krško after power uprate // Proceedings of the International Conference: Nuclear Option in Countries with Small and Medium Grid / Knapp, Vladimir ; Čavlina, Nikola. (ur.). Zagreb: Hrvatsko nuklearno društvo, 1998. str. 211-218

• Baće, Mile ; Pevec, Dubravko ; Šmuc, Tomislav | Reracking Possibilities of the NPP Krško Spent Fuel Pool // Proceedings of the International Conference: Nuclear Option in Countries with Small and Medium Energy Grid / Knapp, Vladimir ; Čavlina, Nikola. (ur.). Zagreb: Hrvatsko nuklearno društvo, 1998. str. 365-371

• Trontl, Krešimir ; Baće, Mile ; Šmuc, Tomislav | Incorporation of multi-layer option into QAD-CGGP code // Nuclear Energy in Central Europe '98, Proceedings / Ravnik, Matjaž ; Jenčič, Igor ; Žagar, Tomaž (ur.). Ljubljana: Nuclear Society of Slovenia, 1998. str. 139-146-x

• Bilić, Tea ; Pevec, Dubravko ; Šmuc, Tomislav | Investigating a possibility to implement 24-month cycle in NPP Krško // Nuclear Energy in Central Europe '98, Proceedings / Ravnik, Matjaž ; Jenčič, Igor ; Žagar, Tomaž (ur.). Ljubljana: Nuclear Society of Slovenia, 1998. str. 107-113-x

• Baće, Mile ; Pevec, Dubravko ; Šmuc, Tomislav | Reracking Possibilities of the NPP Krško Spent Fuel Pool // International Conference: Nuclear Option in Countries with Small and Medium Electricity Grids, Conference Proceedings / Knapp, Vladimir ; Čavlina, Nikola (ur.). Zagreb: Hrvatsko nuklearno društvo, 1998. str. 365-371-x

• Šmuc, Tomislav ; Ječmenica, Radomir ; Trontl, Krešimir | Validation of QAD-CGGP for Shielding Analyses of Intermediate and Low Level Waste Drums // International Conference Nuclear Option in Countries with Small and Medium Electricity Grids : Conference Proceedings / Knapp, Vladimir ; Čavlina, Nikola (ur.). Zagreb: Hrvatsko nuklearno društvo, 1998. str. 456-463

• Šmuc, Tomislav ; Pevec, Dubravko ; Bilić, Tea | Equilibrium Cycles of NPP Krško after Power Uprate // International Conference: Nuclear Option in Countries with Small and Medium Electricity Grids, Conference Proceedings / Knapp, Vladimir ; Čavlina, Nikola (ur.). Zagreb: Hrvatsko nuklearno društvo, 1998. str. 211-218-x

• Bogunović, Nikola ; Šmuc, Tomislav | Comparison of Methods for Reduction of Computational Complexity in Bayesian Networks // Computers in Intelligent Systems. Rijeka: Hrvatska udruga za informacijsku i komunikacijsku tehnologiju, elektroniku i mikroelektroniku - MIPRO, 1999. str. 17-20-x

• Šmuc, Tomislav ; Bogunović, Nikola ; Šarić, Davor | Evolutionary Algorithm for Steiner Tree Optimization // Proc. of the 21st Int. Conf. ITI'99 - Information Technology Interfaces / Kalpić, D. Hljuz, V. (ur.). Zagreb: Fakultet elektrotehnike i računarstva Sveučilišta u Zagrebu, 1999. str. 425-432-x

• Šmuc, Tomislav ; de Leege, P.F.A. | Improved Cross-Section Homogenisation for Research Reactor Criticality Calculations // Proceedings of The Sixth Int. Conf. on Nuclear Criticality Safety. Pariz, 1999. str. 262-268-x

• Šmuc, Tomislav ; de Leege P.F.A., Kloosterman J.L. | Demonstration of the Compact Depletion Models for Burnup Calculations // Proceedings of the Int. Conf. on Mathematics and Computation, Reactor Physics and Environmental Analysis in Nuclear Applications. Madrid: Senda Editorial,S.A., 1999. str. 1901-1911-x

• Baće, Mile ; Ječmenica, Radomir ; Šmuc, Tomislav | Radiological shielding analysis of special building for the old NPP Krško steam generators // International Conference Nuclear Option in Countries with Small and Medium Electricity Grids : proceedings / Knapp, Vladimir ; Čavlina, Nikola (ur.). Zagreb: Hrvatsko nuklearno društvo, 2000. str. 431-438

• Baće, Mile ; Trontl, Krešimir ; Šmuc, Tomislav | Double tiering as an option for spent fuel pool capacity increase // Proceedings of the International Conference Nuclear Energy in Central Europe 2000 / Ravnik, Matjaž ; Žagar, Tomaž (ur.). Ljubljana: NSS, 2000. str. 105.1-105.8

• Baće, Mile ; Ječmenica, Radomir ; Šmuc, Tomislav | Validation of SCALE Code Package on High Performance Neutron Shields // International Conference: Nuclear Energy in Central Europe '99, Proceedings, Volume 1 / Gortnar, Oton ; Stritar, Andrej (ur.). Ljubljana: Nuclear Society of Slovenia, 1999. str. 75-81-x

• Baće, Mile ; Trontl, Krešimir ; Šmuc, Tomislav | Double Tiering as an Option for Spent Fuel Pool Capacity Increase // Proceedings of the International Conference Nuclear Energy in Central Europe 2000 / Mavko, Borut ; Cizelj, Leon ; Kovač, Marko (ur.). Ljubljana: Nuclear Society of Slovenia, 2000. str. 105-112-x

• Pevec, Dubravko ; Šmuc, Tomislav | Investigating a Possibility to Extend an Operating Cycle Length of NPP Krško // Operating Cycle Extension of Nuclear Power Plants, Proceeedings of a Technical Committee Meeting / unknown (ur.). Beč: International Atomic Energy Agency (IAEA), 2000. str. 15-24-x

• Pevec, Dubravko ; Grgić, Davor ; Ječmenica, Radomir ; Trontl, Krešimir ; Gergeta, Kristijan ; Šmuc, Tomislav | Upgrade of the FUMACS Code Package // Proceedings of the International Conference Nuclear Energy in Central Europe 2001. 2001

• Krstačić, Goran ; Gamberger, Dragan ; Šmuc, Tomislav | Coronary heart disease patient models based on inductive machine learning // 8th Conference on Artificial Intelligence in Medicine in Europe / Quaglini, Silvana; Barahona, Pedro; Andreassen, Steen (ur.). Berlin: Springer, 2001. str. 113-116-x

• Šmuc, Tomislav ; Gamberger, Dragan ; Krstačić, Goran | Combining unsupervised and supervised machine learning in analysis of the CHD patient database // 8th Conference on Artificial Intelligence in Medicine in Europe / Quaglini, Silvana; Barahona, Pedro; Andreassen, Steen (ur.). Berlin: Springer, 2001. str. 109-112-x

• Šmuc, Tomislav ; Marić, Ivan ; Bosanac, Gordan ; Gamberger, Dragan ; Bogunović, Nikola ; Krstačić, Goran | Dynamic Features of the Normal Heart Rate Variability // Proceedings of International Conference Computers in Cardiology 2002 / Murray, A. (ur.). Institute of Electrical and Electronics Engineers (IEEE), 2002. str. 241-244 doi: 10.1109/CIC.2002.1166752

  doiieeexplore.ieee.org

• Šmuc, Tomislav | Sensitivity of Differential Evolution Algorithm to Values of Control Parameters // Proceedings of the International Conference on Artificial Intelligence / Arabnia, H.R.; Mun, Y. (ur.). CSREA Press, 2002. str. 1087-1093-x

• Šmuc, Tomislav | Improving Convergence Properties of the Differential Evolution Algorithm // Proceedings of the MENDEL 2002 - 8th International Conference on Soft Computing / Maotušek, R.; Ošmera, P. (ur.). Brno, 2002. str. 80-86-x

• Krstačić, Goran ; Krstačić, Antonija ; Martinis, Mladen, Vargović, Emil ; Knežević, Andrea, Šmalcelj, Anton ; Jembrek-Gostović, Mirjana ; Gamberger, Dragan ; Šmuc, Tomislav, | Non-linear Analysis of Heart Rate Variability in Patients with Coronary Heart Disease // Computers in Cardiology / Alan Murray (ur.). Institute of Electrical and Electronics Engineers (IEEE), 2002. str. 673 - 675-x

• Krstačić, Goran ; Krstačić, A. ; Martinis, Mladen ; Vargović, E. ; Knežević, A. ; Šmalcelj, Anton ; Jembrek-Gostović, M. ; Gamberger, Dragan ; Šmuc, Tomislav | Non-Linear Analysis of Heart Rate Variability in Patients with Coronary Heart Disease // Computers in Cardiology 2002. Memphis (TN), 2002. str. 673-675-x

• Trontl, Krešimir ; Gergeta, Kristijan ; Šmuc, Tomislav | FUMACS-G, a Graphical User Interface for FUMACS Code Package // Proceedings of 4th International Conference Nuclear Option in Countries with Small and Medium Electricity Grids / Kanpp,Vladimir;et al. (ur.). Zagreb: Hrvatsko novinarsko društvo (HND), 2002. str. 4.11.1-4.11.8-x

• Gamberger, Dragan ; Šmuc, Tomislav ; Lavrač, Nada | Subgroup Discovery: On-line Data Mining Server and its Application // Simulations in Biomedicine V / Arnež, Z.M. ; Brebbia, C.A. ; Solina, F. et al. (ur.). Wessex Institute of Technology Press, 2003. str. 433-442-x

• Gergeta, Kristijan ; Pevec, Dubravko ; Šmuc, Tomislav | Depletion Modeling of Integral Burnable Absorbers Containing Enriched Boron // 5th International Conference Nuclear Option in Countries with Small and Medium Electricity Grids / Pevec, Dubravko ; Debrecin, Nenad (ur.). Zagreb: Hrvatsko nuklearno društvo, 2004. str. S_3.28.1-S_3.28.-x

• Topić, Goran ; Šmuc, Tomislav ; Šojat, Zorislav ; Skala, Karolj | Reimplementation of the Random Forest Algorithm // Parallel Numerics, Theory and Applications / Vajtersic, Marian et al. (ur.). Salzburg: University of Salzburg, 2005. str. 119-128-x

• Trontl, Krešimir ; Pevec, Dubravko ; Šmuc, Tomislav | Application of Support Vector Regression in Estimation of Buildup Factors for Double-Layered Shields // Proceedings of European Nuclear Conference ENC 2005. SFEN, 2005

• Gamberger, Dragan ; Prcela, Marin ; Jović, Alan ; Šmuc, Tomislav ; Parati, Ganfranco ; Valentini, Mariaconsuelo ; Kawecka-Jaszcz, Kalina ; Styczkiewicz, Katarzyna ; Kononowicz, Andrzej ; Candelieri, Antonio et al. | Medical knowledge representation within Heartfaid platform // BIOSTEC 2008. INSTICC Institute for Systems and Technologies of Information, Control and Communication, 2008. str. 307-314-x

• Trontl, Krešimir ; Pevec, Dubravko ; Šmuc Tomislav | On Input Vector Representation for the SVR Model of Reactor Core Loading Pattern Critical Parameters // 7th International Conference on Nuclear Option in Countries with Small and Medium Electricity Grids - Conference Proceedings / Čavlina, Nikola ; Pevec, Dubravko ; Bajs, Tomislav (ur.). Zagreb: Hrvatsko nuklearno društvo, 2008. str. S-06.90-1-S-06.90-10

• Bogunović, Nikola ; Šmuc, Tomislav | Applicability of Qualitative ECG Processing to Wearable Computing // Proceedings of the 5th International Workshop and Symposium on Wearable and Implanzable Body Sensor Networks / Zhang, Yuan-ting (ur.). Hong Kong: Institute of Electrical and Electronics Engineers (IEEE), 2008. str. 133-136

• Prcela, Marin ; Gamberger, Dragan ; Šmuc, Tomislav ; Bogunović, Nikola ; | Information gain of structured medical diagnostic tests: Integration of Bayesian networks and ontologies // Proceedings of International Conference on Biomedical Engineering Systems and Technologies / Fred, Ana ; Filipe, Joaquim ; Gamboa, Hugo ; (ur.). Institute for Systems and Technologies of Information, Control and Communication, 2010. str. 235-240

• Antulov-Fantulin, Nino ; Bošnjak, Matko ; Žnidaršič, Martin ; Grčar, Miha ; Morzy, Mikołaj ; Šmuc, Tomislav | ECML-PKDD 2011 Discovery Challenge Overview // Proceedings of the ECML-PKDD 2011 Workshop on Discovery Challenge / Šmuc, Tomislav ; Antulov-Fantulin, Nino ; Morzy, Mikołaj (ur.). Zagreb: Institut Ruđer Bošković, 2011. str. 7-20

• Mihelčić, Matej ; Antulov-Fantulin, Nino ; Bošnjak, Matko ; Šmuc, Tomislav ; | Extending RapidMiner with recommender systems algorithms // Proceedings of the 3rd RapidMiner Community Meeting and Conference (RCOMM 2012) / Ficher, Simon ; Mierswa, Ingo (ur.). Aachen: Shaker, 2012. str. 63-74

• Gamberger, Dragan ; Lučanin, Dražen ; Šmuc, Tomislav | Analysis of World Bank Indicators for Countries with Banking Crises by Subgroup Discovery Induction // MIPRO / Biljanović, Petar (ur.). 2013. str. 1433-1437

• Antulov-Fantulin, Nino ; Bošnjak, Matko ; Zlatić, Vinko ; Grčar, Miha ; Šmuc Tomislav | Synthetic Sequence Generator for Recommender Systems – Memory Biased Random Walk on a Sequence Multilayer Network // Proceedings of 17th International Conference, DS 2014, Lecture Notes in Computer Science, Vol. 8777 / Džeroski, Sašo ; Panov, Panče ; Kocev, Dragi et al. (ur.). Springer, 2014. str. 25-36

  link.springer.comarxiv.org

• Antulov-Fantulin, Nino ; Lančić, Alen ; Štefančić, Hrvoje ; Šikić, Mile ; Šmuc, Tomislav | Statistical Inference Framework for Source Detection of Contagion Processes on Arbitrary Network Structures // Proceedings of 2014 IEEE Eighth International Conference on Self-Adaptive and Self-Organizing Systems Workshops. 2015. str. 78-83

  ieeexplore.ieee.orgarxiv.org

• Brbić, Maria ; Piškorec, Matija ; Vidulin, Vedrana ; Kriško, Anita ; Šmuc, Tomislav ; Supek, Fran | Phenotype Inference from Text and Genomic Data // ECML-PKDD 2017, Lecture Notes in Computer Science / Altun, Yasemin ; Das, Kamalika ; et al. (ur.). Springer, 2017. str. 373-377 doi: 10.1007/978-3-319-71273-4_34

  doiecmlpkdd2017.ijs.si

• Vidulin, Vedrana ; Brbić, Maria ; Supek, Fran ; Šmuc, Tomislav | Evaluation of fusion approaches in large-scale bio-annotation setting // Proceedings of the 4th Workshop on Machine Learning in Life Sciences / Ksieniewicz, Pawel (ur.). Wrocław: European Research Centre of Network Intelligence for Innovation Enhancement, 2016. str. 37-51

  mlls.kssk.pwr.edu.pl

• Levatić, Jurica ; Brbić, Maria ; Stepišnik Perdih, Tomaž ; Kocev, Dragi ; Vidulin, Vedrana ; Šmuc, Tomislav ; Supek, Fran ; Džeroski, Sašo | Phenotype prediction with semi-supervised learning // New frontiers in mining complex patterns NFMCP 2017, Lecture Notes in Computer Science. 2017. str. 1-11

  www.di.uniba.it

• Piškorec Matija ; Bošnjak Matko ; Šmuc Tomislav | Meta-Modeling Execution Times of RapidMiner operators // Proceedings of the 3rd RapidMiner Community Meeting and Conference (RCOMM 2012) / Ficher, Simon ; Mierswa, Ingo (ur.). 2012. str. 159-168

Ostalo

• Gamberger, Dragan ; Krstačić, Goran ; Šmuc, Tomislav | Medical expert evaluation of machine learning results for a coronary heart disease database // Medical Data Analysis / Brause, Rudiger W. ; Hanisch, Ernst (ur.). Berlin: Springer, 2000. str. 159-168-x

• Gamberger, Dragan ; Lavrač, Nada ; Krstačić, Goran ; Šmuc, Tomislav | Inconsistency tests for patient records in a coronary heart disease database // Medical Data Analysis / Brause, Rudiger W. ; Hanisch, Ernst (ur.). Berlin: Springer, 2000. str. 183-189-x

Sažetak izlaganja sa skupa

• Desnica, Uroš ; Šantić, Branko ; Pavlović, Mladen ; Desnica-Franković, Ida Dunja ; Radić, Nikola ; Šmuc, Tomislav ; Petrović, Bojan | Defekti s dubokim novoima i foto-električka svojstva GaAs // Knjiga sažetaka 2. znanstvenog sastanka Hrvatskog fizikalnog društva. Zagreb: Hrvatsko fizikalno društvo, 1999. str. 14-14-x

• Baće, Mile ; Pevec, Dubravko ; Šmuc, Tomislav ; Trontl, Krešimir ; Gergeta, Kristijan | Tehno-ekonomski aspekti ultra dugih radnih ciklusa // Knjiga sažetaka 4 znanstveni sastanak Hrvatskog fizikalnog društva / Kumerički, Krešimir (ur.). Zagreb: Hrvatsko fizikalno društvo, 2003. str. 85-85

• Kašner Mario ; Jelaković Bojan ; Laganović Mario ; Kuzmanić Duško ; Boršo Gordana ; Željković Tajana ; Rončević Tomislav ; Šmuc Tomislav ; Gamberger Dragan ; Rončević Pavle | Serum uric acid is apart to the metabolic syndrome ralated to the seru aldosterone concentration in essential hypertension // Journal of Hypertension, Supplement. 2003. str. s81-x

  www.abstracts2view.com

• Laganović M ; Jelaković, Bojan ; Kuzmanić D ; Boršo G ; Rončević T ; Vdović M ; Željković T ; Kašner M ; Šmuc, Tomislav ; Gamberger, Dragan | Blood pressure – kidney volume relationship in essential hypertension // Journal of Hypertension, Supplement. 2004. str. s220-s220

• Supek, Fran ; Šmuc, Tomislav | Predicting Gene Ontology Categories from Heterogeneous Genomic Data // 4th European Conference on Computational Biology (ECCB 2005) Programme and Abstracts Book / Valencia, Alfonso ; Guigó, Roderic ; Morán, Federico (ur.). Madrid, 2005

  lis.irb.hr

• Pevec, Dubravko ; Baće, Mile ; Šmuc, Tomislav ; Ječmenica, Radomir ; Trontl, Krešimir | Neutroničko modeliranje nuklearnog goriva koje sadrži integralne sagorive apsorbere // Knjiga sažetaka 5. znanstvenog skupa Hrvatskog fizikalnog društva. 2007. str. 121-121

• Pecin, I. ; Zeljković-Vrkić, T. ; Dika, Z. ; Laganovic, M. ; Kos, J. ; Borso, G. ; Kuzmanić, D. ; Smuc, T. ; Gamberger, D. ; Jelaković, B. | Differences in obesity and hypertension between continental and mediterranean Croatian regions. EHUH study results. 2007. str. s201-s201

• Repar, Jelena ; Škunca, Nives ; Supek, Fran ; Šmuc, Tomislav | An XML format for peptide datasets // ECCB'08 European Conference on Computational Biology. 2008

  www.eccb08.org

• Supek, Fran ; Kralj, Marijeta ; Žinić, Biserka ; Šmuc, Tomislav | Computational analysis of in vitro screening data highlights an atypical cytostatic mechanism of a cytosine derivative // ECCB 2008 Proceedings. 2008

  www.eccb08.org

• Škunca, Nives ; Supek, Fran ; Repar, Jelena ; Šmuc, Tomislav | Evaluation of intergene distances across bacterial species // ECCB 2008 Proceedings. 2008

  www.eccb08.org

• Čož-Rakovac, Rozelinda ; Strunjak-Perović, Ivančica ; Topić Popović, Natalija ; Šmuc, Tomislav ; Jadan, Margita ; Galetović, Sonja ; Čolak, Slavica ; Lovrinov, Mario ; Milina, Ana | Seasonal blood chemistry patterns of shade fish Argyrosomus regius // Diseases of Fish and Shellfish ; 14th EAFP International Conference ; Prague, September 14-19, 2009 / EAFP Committee (ur.). Prag: HALAMA Publishing House, 2009. str. 287-287

• Škunca, Nives ; Šmuc, Tomislav ; Supek, Fran | REViGO: Redundancy Elimination and Visualization of Gene Ontology Term Lists // The 3rd Adriatic Meeting on Computational Solutions in the Life Sciences - Book of Abstracts / Babić, Darko ; Došlić, Nađa ; Smith, David et al. (ur.). Zagreb: Institute of Computational Life Sciences (ICLS), 2009. str. 75-75

• Supek, Fran ; Šmuc, Tomislav ; Repar, Jelena ; Škunca, Nives | GORBI: Web application for the prediction of a protein's functional context // The 3rd Adriatic Meeting on Computational Solutions in the Life Sciences - Book of Abstracts / Babić, Darko ; Došlić, Nađa ; Smith, David et al. (ur.). Zagreb: Institute of Computational Life Sciences (ICLS), 2009. str. 76-76

• Skunca, Nives ; Supek, Fran ; Smuc, Tomislav ; Panov, Pance ; Dzeroski, Saso | Functional annotation of orthologous groups by using hierarchical multi label classification // ISMB & ECCB 2009. 2009

• Supek, Fran ; Škunca, Nives ; Šmuc, Tomislav | Redundancy Elimination and Visualization of Gene Ontology Term Lists // ISMB & ECCB 2009. 2009

• Čolak, Slavica ; Čož-Rakovac, Rozelinda ; Šmuc, Tomislav ; Lovrinov, Mario ; Topić Popović, Natalija ; Strunjak-Perović, Ivančica ; Jadan, Margita ; Barišić, Josip ; Beer Ljubić, Blanka ; Šimpraga, Miljenko et al. | Haemolymph biochemistry profile of lobster Palinurus elephas (Fabricius, 1787) after exposure to emersion // 15th International Conference on Diseases of Fish and Shellfish : Abstract book / EAFP (ur.). Split, 2011. str. 281-281

• Vojta, Aleksandar ; Šmuc, Tomislav ; Radin, Lada ; Shek-Vugrovečki, Ana ; Šimpraga, Miljenko | Significance and calculation of reference intervals for blood analytes in organically raised small ruminants // International Meeting of Croatian Physiological Society, Abstract Book / Mihalj M. ; Novak S. (ur.). Zagreb: Hrvatsko društvo fiziologa, 2011. str. 29-29

• Čož-Rakovac, Rozelinda ; Strunjak-Perović, Ivančica ; Topić Popović, Natalija ; Šmuc, Tomislav ; Jadan, Margita ; Čolak, Slavica ; Lovrinov, Mario ; Milina, Ana ; Barišić, Josip | Discrimination between shade fish physiological profile based on blood biochemistry using statistical classification models // Book of Abstracts ; 46th Croatian & 6th International Symposium on Agriculture / Milan Pospišil (ur.). Zagreb: Agronomski fakultet Sveučilišta u Zagrebu, 2011. str. 173-176

• Čolak, Slavica ; Čož-Rakovac, Rozelinda ; Šmuc, Tomislav ; Lovrinov, Mario ; Topić Popović, Natalija ; Strunjak-Perović, Ivančica ; Barišić, Josip ; Jadan, Margita ; Beer Ljubić, Blanka ; Šimpraga, Miljenko et al. | Hemolymph biochemistry profile of three decapod crustaceans // Proceedings/Book of Abstracts. 47 Croatian and 7 International Symposium on Agriculture / Pospišil, Milan (ur.). Zagreb: Luna Grafika, 2012. str. 154-155

• Čož-Rakovac, Rozelinda ; Fazio, Francesco ; Šmuc, Tomislav ; Topić Popović, Natalija ; Strunjak- Perović, Ivančica ; Sauerborn Klobučar, Roberta ; Piccione, Giuseppe ; Faggio, Caterina | Blood biochemical approach in differentiation of Adriatic and Tyrrhenian mullet populations (Genus Mugil Linnaeus, 1758) // Book of Abstracts, 48th CROATIAN AND 8th INTERNATIONAL SYMPOSIUM ON AGRICULTURE / Marić, S ; Lončarić, Z (ur.). Osijek: Poljoprivredni fakultet Sveučilišta Josipa Jurja Strossmayera u Osijeku, 2013. str. 228-229

• Čolak, Slavica ; Čož-Rakovac, Roselinda ; Šmuc, T. ; Lovrinov, Mario ; Topić Popović, Natalija ; Strunjak-Perović, Iva ; Barišić, Josip ; Jadan, Margita ; Beer Ljubić, B. ; Šimpraga, M. et al. | Biokemijski profil hemolimfe triju vrsta dekapodnih rakova. 2012

• Antolović, Vlatka ; Šmuc, Tomislav ; Weber, Igor | Characterizing the movement of different actin cytoskeleton mutants of Dictyostelium discoideum // Computational Biology and Innovation Symposium. Dublin, 2013. str. 38-38

• Antolović, Vlatka ; Šmuc, Tomislav ; Weber, Igor. | Characterizing cell migration in actin cytoskeleton mutants of Dictyostelium discoideum // The 14th International ELMI Meeting / Bakke, Oddmund ; Stenmark, Harald (ur.). Oslo, 2014. str. 133-134

• Antolović, Vlatka ; Šmuc, Tomislav ; Weber, Igor | Cluster analysis of the cell migration in Dictyostelium // Dicty 2014, Annual International Dictyostelium Conference / Gräf, Ralph ; Thewes, Sascha ; Beta, Carsten (ur.). Potsdam: Deutsche Gesellschaft für Zellbiologie (DGZ), 2014. str. 64-64

  dicty2014.de

• Matija Piškorec, Nino Antulov-Fantulin, Iva Miholić, Tomislav Šmuc, Mile Šikić | Inference of influence in social networks // CompleNet'17 : Programme with Abstracts. 2017. str. 93-93

  complenet17.weebly.com

• Piškorec, Matija ; Šmuc, Tomislav ; Šikić, Mile | Differentiating between Exogenous and Endogenous Information Propagation in Social Networks // Second International Workshop on Data Science : Abstract Book. 2017. str. 39-41

• Grubišić, Ivan ; Lipić, Tomislav ; Mesić, Benjamin ; Šmuc, Tomislav | BricksND - Benchmark for disentangled concept learning. 2020

  fulir.irb.hrfulir.irb.hrfulir.irb.hr

• Stepanić, Višnja ; Oršolić, Davor ; Šmuc, Tomislav | (Re)purposing starts virtually by predictive machine-learning models // 27th Croatian Meeting of Chemists and Chemical Engineers and 5th Symposium Vladimir Prelog : Book of Abstracts / Marković, Dean ; Meštrović, Ernest ; Namjesnik, Danijel et al. (ur.). Zagreb: Hrvatsko kemijsko društvo, 2021. str. 16-16

  27hskiki.hkd.hr

• Stepanić, Višnja ; Oršolić, Davor ; Pehar, Vesna ; Šmuc, Tomislav | Development of phytotoxic natural molecules as complementary herbicidal agents is supported by machine learning study // Book of Abstracts of 1st international conference "Food & Climate Change" / Šamec, Dunja ; Šarkanj, Bojan ; Sviličić Petrić, Ines (ur.). Koprivnica, 2021. str. 39-39

  perspire.eu

• Lučić, Bono ; Stepanić, Višnja ; Fa, Dionizije ; Jović, Ozren ; Lipić, Tomislav ; Šmuc, Tomislav | Possibility of discrimination between approved and withdrawn drugs using multivariate classification structure-property models based on molecular descriptors // Math/Chem/Comp 2022 and 33rd MC2 Conference : Book of Abstracts / Vančik, Hrvoj ; Cioslowski, Jerzy ; Namjesnik, Danijel (ur.). Zagreb: Hrvatsko kemijsko društvo, 2022. str. 21-21

  mcc.hkd.hr

• Punčec Marina ; Stepanić Višnja ; Šmuc, Tomislav | Visual Analytics of Structure-Activity Relationships of Natural Products and Drugs // Computational Chemistry Day 2022 : Book of Abstracts. Zagreb: Institut Ruđer Bošković, 2022. str. 35-35

  ccd2022.irb.hr

• Baković, Marija ; Jurić, Sara ; Punčec, Marina ; Martić, Ana ; Matijević, Gabrijela ; Djedović, Elvis ; Šmuc, Tomislav ; Roje, Marin ; Čož-Rakovac, Rozelindra | The Influence of Different Drying Temperatures on the Phenolic Profile and Biological Activity of the Cyanobacterium Spirulina sp. // Book of Abstracts of 15th World Congress on Polyphenols Applications. 2022. str. 80-80

• Baković, Marija ; Martić, Ana ; Jurić, Sara ; Punčec, Marina ; Matijević, Gabrijela ; Djedović, Elvis ; Šmuc, Tomislav ; Roje, Marin ; Čož-Rakovac, Rozelindra | Spirulina sp. – different drying temperatures and it’s biological activity // Book of Abstracts of AlgaEurope 2022. 2022. str. 225-225

• Punčec, Marina ; Stepanić, Višnja ; Šmuc, Tomislav | Bioactivity potential and druglikeness of natural products from marine organisms // World Aquaculture 21 : Abstract Book. Mérida: World Aquaculture Society, 2022. str. 237-237

  wasblobstorage.blob.core.windows.net

• Matulja, Dario ; Matijević, Gabrijela ; Babić, Sanja ; Grbčić, Petra ; Bojanić, Krunoslav ; Laclef, Sylvain ; Jović, Ozren ; Šmuc, Tomislav ; Car, Iris ; Sedić, Mirela et al. | Bioprospecting of the Adriatic coral Eunicella cavolini // 28th CROATIAN MEETING OF CHEMISTS & CHEMICAL ENGINEERS / Rogošić, Marko (ur.). Zagreb: Hrvatsko društvo kemijskih inženjera i tehnologa (HDKI), 2023. str. 101-101

• Punčec, Marina; Šmuc, Tomislav; Stepanić, Višnja | Hierarchical in silico pipeline for identifying active compounds and/or protein targets // IX EFMC International Symposium on Advances in Synthetic and Medicinal Chemistry: Book of Abstracts. Louvain-la-Neuve, Wallonia, Belgium: European Federation for Medicinal chemistry and Chemical biology (EFMC), 2023. str. 316-316

Stručni rad

• Bošnjak, Matko ; Antulov-Fantulin, Nino ; Šmuc, Tomislav ; Gamberger, Dragan | Constructing recommender systems workflow templates in RapidMiner // Proceedings of the 2nd RapidMiner Community Meeting and Conference (RCOMM 2011) / Ficher, Simon ; Mierswa, Ingo (ur.). Aachen: Shaker, 2011. str. 101-112

Prošireni sažetak izlaganja sa skupa

• Vidulin, Vedrana ; Šmuc, Tomislav ; Supek, Fran | Speed and accuracy benchmarks of large-scale microbial gene function prediction with supervised machine learning // Discovery science : book of abstracts. 2014. str. 1-3

  ds2014.ijs.si

Sažetak izlaganja sa skupa

• Jelaković, Bojan ; Željković-Vrkić, T. ; Pećin, I. ; Jovanović, Aleksandar ; Podobnik, D. ; Šmuc, Tomislav ; Gamberger, Dragan ; Laganović, Mario ; Dika, Živka ; Boršo, Gordana et al. | Epidemiology of hypertension in Croatia. EHUH study // Journal of hypertension. Supplement. 2006. str. 242-242

• Jelaković, Bojan ; Pećin, I. ; Željković-Vrkić, T. ; Dika, Živka ; Laganović, Mario ; Kos, Josip ; Jovanović, Aleksandar ; Boršo, Gordana ; Kuzmanic, Duško ; Šmuc, Tomislav | Education and income as determinants for blood pressure value and hypertension prevalence in Croatia. EHUH study results // Journal of hypertension. Supplement. 2006. str. 347-347

Izvorni znanstveni rad

• Gamberger, Dragan ; Lučanin, Dražen ; Šmuc, Tomislav | Descriptive modeling of systemic banking crises // Lecture notes in computer science / Ganascia, J-G ; Lenca, P. ; Petit, J-M (ur.). 2012. str. 67-80

• Piškorec, Matija ; Sluban, Borut ; Šmuc, Tomislav | MultiNets: Web-Based Multilayer Network Visualization // Lecture notes in computer science / Albert Bifet, Michael May, Bianca Zadrozny, Ricard Gavalda, Dino Pedreschi, Francesco Bonchi, Jaime Cardoso, Myra Spiliopoulou (ur.). 2015. str. 298-302

  link.springer.com

• Mihelčić, Matej ; Šmuc, Tomislav | InterSet: Interactive Redescription Set Exploration // Lecture notes in computer science / Calders, Toon ; Ceci, Michelangelo ; Malerba, Donato (ur.). 2016. str. 35-50 doi: 10.1007/978-3-319-46307-0_3

  doilink.springer.com

• Mihelčić, Matej ; Džeroski, Sašo ; Lavrač, Nada ; Šmuc, Tomislav | Redescription Mining with Multi-target Predictive Clustering Trees // Lecture notes in computer science. 2016. str. 125-143 doi: 10.1007/978-3-319-39315-5_9

  doilink.springer.com

• Piškorec, Matija ; Antulov-Fantulin, Nino ; Miholić, Iva ; Šmuc, Tomislav ; Šikić, Mile | Modeling Peer and External Influence in Online Social Networks: Case of 2013 Referendum in Croatia // Studies in computational intelligence / Cherifi, Chantal ; Cherifi, Hocine ; Karsai, Marton et al. (ur.). 2017. str. 1015-1027 doi: 10.1007/978-3-319-72150-7_82

  doi

Neobjavljeni prilog sa skupa

• Stepanić, Višnja ; Oršolić, Davor ; Šmuc, Tomislav | Machine learning in chemical compound space // Mini-simpozij Hrvatskog kemijskog društva | Rijeka, Hrvatska, 04.07.2022-04.07.2022

  www.biotech.uniri.hr

• Čož-Rakovac, Rozelinda ; Babić, Sanja ; Topić Popović, Natalija ; Šmuc, Tomislav | Determination of bioactive potential of brown alga Padina pavonica from the Adriatic Sea // XX International Symposium on Fish Nutrition and Feeding Towards Precision Fish Nutrition and Feeding (ISFNF) | Sorrento, Italija, 05.06.2022-09.06.2022

• Oršolić, Davor ; Lučić, Bono ; Stepanić, Višnja ; Šmuc, Tomislav | Prediction of Drug-Kinase Binding Affinities with Focus on Conserved Protein Kinase Domain // ISMB/ECCB 2021 (29th Annual Conference) | Virtual Event, 25.07.2021-30.07.2021

• Babić, Sanja; Begić, Karolina; Čižmek, Lara; Ul’yanovskii, NIkolay V; Kosyakov, Dmitry S; Cikoš, Anamarija; Jokić, Stela;, Strunjak-Perović, Ivančica; Topić Popović, Natalija; Šmuc, Tomislav et al. | Pigments and its derivatives: Unlocking the biological potential of macroalga Cystoseira compressa // XIII ECMNP European Conference on Marine Natural Products | Granada, Španjolska, 03.09.2023-08.09.2023

Doktorska disertacija

• Trontl, Krešimir | Primjena regresijskog modela s potpornim vektorima u proračunu reaktorskog štita / Pevec, Dubravko ; Šmuc, Tomislav (mentor); | Zagreb, Fakultet elektrotehnike i računarstva, . 2008

• Supek, Fran | Detecting natural selection for translational efficiency in bacterial and archaeal genomes: a machine learning approach / Tomislav Šmuc (mentor); | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, . 2010

• Antulov-Fantulin, Nino | Statistical inference algorithms for epidemic processes on complex networks / Šikić, Mile ; Šmuc, Tomislav (mentor); | Zagreb, Fakultet elektrotehnike i računarstva, . 2015

• Piškorec, Matija | Statistical inference of exogenous and endogenous information propagation in social networks / Šikić, Mile ; Šmuc, Tomislav (mentor); | Zagreb, Fakultet elektrotehnike i računarstva, . 2019

  urn.nsk.hr

Elaborat/studija

• Pevec, Dubravko ; Šmuc, Tomislav ; Urli, Natko | Gospodarenje gorivom u jezgri reaktora NE Krško u uvjetima predviđenog povećanja snage reaktora nakon zamjene parogeneratora // Gospodarenje gorivom u jezgri reaktora NE Krško u uvjetima predviđenog povećanja snage reaktora nakon zamjene parogeneratora. 1998.

• Pevec, Dubravko ; Šmuc, Tomislav ; Urli, Natko | Analiza moderatorskog temperaturnog koeficijenta jezgre NE Krško u uvjetima povećanja snage // Analiza moderatorskog temperaturnog koeficijenta jezgre NE Krško u uvjetima povećanja snage. 1998.

• Pevec, Dubravko ; Baće, Mile ; Šmuc, Tomislav ; Ječmenica, Radomir ; Trontl, Krešimir | Razvoj metoda i programa za proračun štitova od nuklearnog zračenja // Razvoj metoda i programa za proračun štitova od nuklearnog zračenja. 1998.

• Stojanovski, Jadranka ; Zorc, Hrvoje ; Pećar-Ilić, Jadranka ; Šmuc, Tomislav ; Bronić, Josip ; Pintar, Ivan ; Skala, Karolj | Strategija razvoja mrežnih stranica Instituta Ruđer Bošković // interni dokument IRB. 2002.

• Baće, Mile ; Grgić, Davor ; Jakopec, S. ; Knapp, Vladimir ; Kulišić, Petar ; Petković, Tomislav ; Pevec, Dubravko ; Šmuc, Tomislav | Analiza, provjera i proračun štitova za odlaganje radioaktivnog otpada // Arhiva Nuklearna elektrana Krško. 1989.

• Pevec, Dubravko ; Šmuc, Tomislav ; Ječmenica, Radomir ; Trontl, Krešimir | Analiza 24 mjesečnog radnog ciklusa NE Krško u uvjetima povećanja snage. 1998.

• Pevec, Dubravko ; Šmuc, Tomislav ; Grgić, Davor ; Trontl, Krešimir ; Ječmenica, Radomir ; Gergeta, Kristijan ; Matijević, Mario | Upgrade of FUMACS Code Package for Modeling of NGF and Gadolinium, Final Report. 2009.

• Pevec, Dubravko ; Baće, Mile ; Ječmenica, Radomir ; Trontl, Krešimir ; Šmuc, Tomislav ; Grgić, Davor | Modernizacija paketa računalskih programa FUMACS. 2000.

Stručna ekspertiza

• Baće, Mile ; Knapp, Vladimir ; Kulišić, Petar ; Pevec, Dubravko ; Jakopec, S. ; Šmuc, Tomislav | Proračun štita za gama zračenje iz srednje aktivnog otpada nuklearne elektrane // Arhiva Zavoda za primjenjenu fiziku, FER. 1987.