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Next Generation Sequencing Techniques and Software Applications

IV Bioinformatics workshop in Galaxy Training Network, organized by Centre for Informatics and Computing, RBI
12.3.2015.
Next Generation Sequencing Techniques and Software Applications

A 2-day workshop covering a spread of topics in biology, genomics, and life science. The first day will present a set of lectures and the second day will host three hands-on workshop sessions.

IV BW Workshop

Who is this for?
Researchers, postdocs and students interested in Next Generation Sequencing, bioinformatics, data analysis, software tools, and computer programming.

The objectives
Participants will get a broad overview of topics covering multiple facets of bioinformatics, genomics, and life science. The workshop will cover techniques as well as specific tools, including Galaxy and Ensembl. The first day will present a set of lectures and the second day will host two hands-on workshop sessions.

When: 5-6 October, 2015

Where: Ruđer Bošković Institute (RBI), Bijenička c. 54, Zagreb

Tentative Programme, Day 1

Monday October 5, 2015

Location: Plava dvorana (Blue Room), 3rd wing

Lectures:

09:00 - 09:05

Welcome and overview
Enis Afgan (RBI)

09:05 - 09:30

A case for cloud computing in bioinformatics
Enis Afgan (RBI, Croatia)

09:30 - 10:00

Towards supporting accessible, reproducible, and
transparent research in the life sciences
Yvan Le Bras (IRISA-INRIA, France)

10:00 - 10:30

To be announced
Sebastian Schoenherr, Lukas Forer, Hansi Weissensteiner (MUI, Austria)

10:30 - 11:00

Coffee break and poster section

11:00 - 11:30

Mapping the epigenome: an application in cancer genomics
Rosa Karlić (PMF, Zagreb)

11:30 - 12:00

Characterization of repeatom from NGS data using RepeatExplorer
Petr Novak (CAS - Institute of Microbiology, Czech Republic)

12:00 - 12:30

Virtual Screening with Galaxy: LiSIs perspective
Christos Kannas (IS - The University of Sheffield, UK)

12:30 - 13:30

Lunch break

13:30 - 14:00

Data intensive biology and data provenance graphs
Gianluigi Zanetti (CRS4, Italy)

14:30 - 15:00

To be announced

15:00 - 15:30

De novo genome assembly from 3rd generation sequencers data
Ivan Sović/Davor Davidović (RBI, Croatia)

Tentative Programme, Day 2

Tuesday October 6, 2015

Location: Computer classroom, Library, 5th wing

9:30 - 11:00

Imputation server/mtDNA server
Sebastian Schoenherr, Lukas Forer, Hansi Weissensteiner (MUI, Austria)

11:00 - 11:15 

Coffee break

11:15 - 12:45

NGS 101 with Galaxy
Enis Afgan, Davor Davidović (RBI, Croatia)

12:45 - 14:00

Lunch break

14:00 - 15:30

Introductory Python programming for biologists
Enis Afgan, Davor Davidović (RBI, Croatia)

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