Repar Jelena, Zahradka Davor, Sović Ivan, Zahradka Ksenija. Characterization of gross genome rearrangements in Deinococcus radiodurans recA mutants. Scientific reports 11 (2021) 1-2, 10939, https://doi.org/10.1038/s41598-021-89173-9

Repar Jelena, Supek Fran, Klanjscek Tin, Warnecke Tobias, Zahradka Ksenija, Zahradka Davor. Elevated rate of genome rearrangements in radiation-resistant bacteria. Genetics 205 (2017) 4, 1677-1689. https://doi.org/10.1038/10.1534/genetics.116.196154

Repar Jelena,Warnecke Tobias. Non-random inversion landscapes in prokaryotic genomes are shaped by heterogeneous selection pressures. Molecular Biology and Evolution 34 (2017) 8, 1902-1911. https://doi.org/10.1093/molbev/msx127

Repar Jelena, Briški Nina, Buljubašić Maja, Zahradka Ksenija, Zahradka Davor. Exonuclease VII is involved in “reckless” DNA degradation in UV-irradiated Escherichia coli. Mutation research/Genetic toxicology and environmental mutagenesis. 750 (2013) 1-2, 96-104. https://doi.org/10.1016/j.mrgentox.2012.10.005

Repar Jelena, Cvjetan Svjetlana, Slade Dea, Radman Miroslav, Zahradka Davor, Zahradka Ksenija. RecA protein assures fidelity of DNA repair and genome stability in Deinococcus radiodurans.DNA repair (Amst.). 9 (2010) 11, 1151-1161. https://doi.org/10.1016/j.dnarep.2010.08.003

Izvorni znanstveni rad

• Zahradka, Ksenija; Zahradka, Davor; Repar, Jelena | Structural Differences between the Genomes of Deinococcus radiodurans Strains from Different Laboratories // Genes, 15 (2024), 7; 847, 14. doi: 10.3390/genes15070847

  doiwww.mdpi.comfulir.irb.hr

• Smolko, Ana; Repar, Jelena; Matković, Marija; Pavlović, Iva; Penčik, Aleš; Novak, Ondrej; Ludwig-Mueller, Jutta; Salopek-Sondi, Branka | Application of Long-Chained Auxin Conjugates Influenced Auxin Metabolism and Transcriptome Response in Brassica rapa L. ssp. pekinensis // International journal of molecular sciences, 25 (2024), 1; 447, 18. doi: 10.3390/ijms25010447

  doifulir.irb.hrwww.mdpi.com

• Zahradka, Ksenija ; Repar, Jelena ; Đermić, Damir ; Zahradka, Davor | Genetic analysis of transductional recombination in Escherichia coli reveals differences in the postsynaptic stages of RecBCD and RecFOR pathways // Periodicum biologorum, 124 (2022), 3-4; 97-106. doi: 10.18054/pb.v124i3-4.23604

  doihrcak.srce.hrhrcak.srce.hrdoi.orgfulir.irb.hr

• Zahradka, Ksenija ; Repar, Jelena ; Đermić, Damir ; Zahradka, Davor | Chromosome Segregation and Cell Division Defects in Escherichia coli Recombination Mutants Exposed to Different DNA-Damaging Treatments // Microorganisms, 11 (2023), 3; 11030701, 30. doi: 10.3390/microorganisms11030701

  doiwww.mdpi.comfulir.irb.hr

• Korenčić, Damir ; Ristov, Strahil ; Repar, Jelena ; Šnajder, Jan | A Topic Coverage Approach to Evaluation of Topic Models // IEEE access, 9 (2021), 123280-123312. doi: 10.1109/access.2021.3109425

  doiieeexplore.ieee.orgieeexplore.ieee.orgfulir.irb.hr

• Lozica, Liča ; Repar, Jelena ; Gottstein, Željko | Longitudinal study on the effect of autogenous vaccine application on the sequence type and virulence profiles of Escherichia coli in broiler breeder flocks // Veterinary microbiology, 259 (2021), 109159, 12. doi: 10.1016/j.vetmic.2021.109159

  doiwww.sciencedirect.comdoi.org

• Repar, Jelena ; Zahradka, Davor ; Sović, Ivan ; Zahradka, Ksenija | Characterization of gross genome rearrangements in Deinococcus radiodurans recA mutants // Scientific reports, 11 (2021), 1; 10939, 11. doi: 10.1038/s41598-021-89173-9

  doiwww.nature.comdoi.orgfulir.irb.hr

• Buljubašić, Maja ; Hlevnjak, Ana ; Repar, Jelena ; Đermić, Damir ; Filić, Vedrana ; Weber, Igor ; Zahradka, Ksenija ; Zahradka, Davor | RecBCD- RecFOR-independent pathway of homologous recombination in Escherichia coli // DNA repair, 83 (2019), 102670, 16. doi: 10.1016/j.dnarep.2019.102670

  doidoi.orgwww.sciencedirect.com

• Krstin, Ljiljana ; Katanić, Zorana ; Repar, Jelena ; Ježić, Marin ; Kobaš, Ana ; Ćurković- Perica, Mirna | Genetic diversity of Cryphonectria hypovirus 1, a biocontrol agent of chestnut blight, in Croatia and Slovenia // Microbial ecology, 79 (2020), 148-163. doi: 10.1007/s00248-019-01377-9

  doilink.springer.comdoi.org

• Repar, Jelena ; Warnecke, Tobias | Non-random inversion landscapes in prokaryotic genomes are shaped by heterogeneous selection pressures // Molecular biology and evolution, 34 (2017), 8; 1902-1911. doi: 10.1093/molbev/msx127

  doiacademic.oup.comdoi.orgacademic.oup.com

• Repar, Jelena ; Warnecke, Tobias | Mobile introns shape the genetic diversity of host genes // Genetics, 205 (2017), 4; 1641-1648. doi: 10.1534/genetics.116.199059

  doibiorxiv.orgwww.genetics.orgdoi.org

• Repar, Jelena ; Supek, Fran ; Klanjšček, Tin ; Warnecke, Tobias ; Zahradka, Ksenija ; Zahradka, Davor | Elevated rate of genome rearrangements in radiation-resistant bacteria // Genetics, 205 (2017), 4; 1677-1689. doi: 10.1534/genetics.116.196154

  doiwww.genetics.orgdoi.org

• Repar, Jelena ; Šućurović, Sandra ; Zahradka, Ksenija ; Zahradka, Davor ; Ćurković-Perica, Mirna | Stress resistance of Escherichia coli and Bacillus subtilis is modulated by auxins // Canadian journal of microbiology, 59 (2013), 11; 766-770. doi: 10.1139/cjm-2013-0266

  doiwww.nrcresearchpress.com

• Repar, Jelena ; Zahradka, Davor ; Zahradka, Ksenija | Accuracy of genome reassembly in gamma-irradiated Escherichia coli // Food technology and biotechnology, 51 (2013), 3; 327-337

  ftb.com.hrfulir.irb.hr

• Repar, Jelena ; Briški, Nina ; Buljubašić, Maja ; Zahradka, Ksenija ; Zahradka, Davor | Exonuclease VII is involved in "reckless" DNA degradation in UV-irradiated Escherichia coli // Mutation research. Genetic toxicology and environmental mutagenesis, 750 (2013), 1/2; 96-104. doi: 10.1016/j.mrgentox.2012.10.005

  doiac.els-cdn.comwww.sciencedirect.comdx.doi.org

• Buljubašić, Maja ; Repar, Jelena ; Zahradka, Ksenija ; Đermić, Damir ; Zahradka, Davor | RecF recombination pathway in Escherichia coli cells lacking RecQ, UvrD and HelD helicases // DNA repair, 11 (2012), 4; 419-430. doi: 10.1016/j.dnarep.2012.01.011

  doidx.doi.orgwww.sciencedirect.com

• Repar, Jelena ; Cvjetan, Svjetlana ; Slade, Dea ; Radman, Miroslav ; Zahradka, Davor ; Zahradka, Ksenija | RecA protein assures fidelity of DNA repair and genome stability in Deinococcus radiodurans // DNA repair, 9 (2010), 11; 1151-1161. doi: 10.1016/j.dnarep.2010.08.003

  doiwww.sciencedirect.comdoi.org

• Supek, Fran ; Škunca, Nives ; Repar, Jelena ; Vlahoviček, Kristian ; Šmuc, Tomislav | Translational Selection Is Ubiquitous in Prokaryotes // PLOS genetics, 6 (2010), 6; e1001004, 13. doi: 10.1371/journal.pgen.1001004

  doiwww.plosgenetics.orgjournals.plos.org

Sažetak izlaganja sa skupa

• Zahradka, Ksenija ; Repar, Jelena ; Đermić, Damir ; Zahradka, Davor | Chromosome segregation and cell division defects in Escherichia coli after induction of double- strand DNA breaks // Power of Microbes in Industry and Environment 2023: Book of Abstracts / Teparić, Renata; Leboš Pavunc, Andreja; Kifer, Domagoj (ur.). | Zagreb: Croatian Microbiological Society, 2023. str. 73-73

  hmd-cms.hr

• Krstin, Ljiljana ; Katanić, Zorana ; Repar, Jelena ; Ježić, Marin ; Kobaš, Ana ; Lučić, Katarina ; Ćurković-Perica, Mirna | Association between phenotype of hypovirulent Cryphonectria parasitica isolates and Cryphonectria hypovirus 1 sequence variations // FEMS Online Conference on Microbiology - Electronic Abstract Book. | 2020. str. 418-418

  fems-microbiology.org

• Lozica, Liča ; Horvatek Tomić, Danijela ; Repar, Jelena ; Gottstein, Željko | Effect of autogenous vaccine on the phylogenetic relationship and virulence profiles of avian pathogenic E. coli isolated from broiler breeder flocks // 8th International Congress "Veterinary Science and Profession"- Book of Abstracts. | Zagreb: Veterinarski fakultet Sveučilišta u Zagrebu, 2019. str. 68-68

• Buljubašić, Maja ; Zahradka, Ksenija ; Hlevnjak, Ana ; Repar, Jelena ; Đermić, Damir ; Zahradka, Davor | RecBCD- RecFOR-independent pathway of homologous recombination in Escherichia coli // 4th Congress of Croatian Geneticists with international participation - Book of Abstracts. | Zagreb: Hrvatsko genetičko društvo, 2018. str. 25-25

  pubweb.carnet.hr

• Repar, Jelena ; Supek, Fran ; Klanjscek, Tin ; Warnecke, Tobias ; Zahradka, Ksenija ; Zahradka, Davor | Genome rearrangements in radiation-resistant bacteria // 4th Congress of Croatian Geneticists with international participation : Book of Abstracts. | Zagreb: Hrvatsko genetičko društvo, 2018. str. 24-24

  pubweb.carnet.hr

• Repar, Jelena ; Warnecke, Tobias | Selection and mutation bias shape inversion landscapes across prokaryotic genomes // The Biology and Physics of Bacterial Chromatin Organization. | 2016

• Repar, Jelena; Warnecke, Tobias | Replication-related constraints on the evolution of archaeal genome structure // Molecular Biology of Archaea 5 Poster Abstract Book. | 2016, P5, 51

  microbiologysociety.org

• Zahradka, Ksenija ; Hlevnjak, Ana ; Repar, Jelena ; Buljubašić, Maja ; Zahradka, Davor | Genetic differences in postsynaptic stages of two recombinational repair pathways in Escherichia coli // EEMGS 2016 Annual Meeting - Programme & Abstract book. | Kopenhagen, 2016. str. 146-146

• Zahradka, Ksenija ; Repar, Jelena ; Buljubašić, Maja ; Zahradka, Davor | ExoI, ExoVII and SbcCD nucleases participate in "reckless" DNA degradation in Escherichia coli // BioMicroWorld 2013 - Book of Abstracts. | 2013. str. 534-534

  www.biomicroworld2013.org

• Repar, Jelena ; Supek, Fran ; Zahradka, Davor ; Zahradka, Ksenija | Elevated rate of gene order change in radiation-resistant Deinococci // FEMS 2013 - 5th Congress of European Microbiologists. | 2013

  www2.kenes.com

• Buljubašić, Maja ; Repar, Jelena ; Zahradka, Ksenija ; Đermić, Damir ; Zahradka, Davor | Roles of RecQ, UvrD and HelD helicases in the RecF recombination pathway of Escherichia coli // Book of Abstracts of the 3rd Congress of Croatian Geneticists with international participation. | Zagreb: Hrvatsko genetičko društvo, 2012. str. 11-11

• Repar, Jelena ; Cvjetan, Svjetlana ; Slade, Dea ; Radman, Miroslav ; Zahradka, Davor ; Zahradka, Ksenija | Fidelity of DNA repair and genome stability in Deinococcus radiodurans // Book of Abstracts of the 3rd Congress of Croatian Geneticists with international participation. | Zagreb: Hrvatsko genetičko društvo, 2012. str. 10-10

• Repar, Jelena ; Zahradka, Davor ; Zahradka, Ksenija | Degree of synteny between the genomes of radiation-resistant species of Deinococcus does not reflect their extreme dsDNA break repair capabilities // 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology – ISMB/ECCB 2011. | 2011

  www.iscb.org

• Supek, Fran ; Šmuc, Tomislav ; Repar, Jelena ; Škunca, Nives | GORBI: Web application for the prediction of a protein's functional context // The 3rd Adriatic Meeting on Computational Solutions in the Life Sciences - Book of Abstracts. | Zagreb: Institute of Computational Life Sciences (ICLS), 2009. str. 76-76

• Škunca, Nives ; Supek, Fran ; Repar, Jelena ; Šmuc, Tomislav | Evaluation of intergene distances across bacterial species // ECCB 2008 Proceedings. | 2008

  www.eccb08.org

• Repar, Jelena ; Cvjetan, Svjetlana ; Zahradka, Davor ; Radman, Miroslav ; Zahradka, Ksenija | Popravak DNA i stabilnost genoma u bakteriji Deinococcus radiodurans // 50 godina molekularne biologije u Hrvatskoj - Zbornik sažetaka. | Zagreb: Institut Ruđer Bošković, 2008. str. 32-32

• Repar, Jelena ; Škunca, Nives ; Supek, Fran ; Šmuc, Tomislav | An XML format for peptide datasets // ECCB'08 European Conference on Computational Biology. | 2008

  www.eccb08.org

• Novak Agbaba, S. ; Ćelepirović, N. ; Krstin, Ljiljana ; Repar, Jelena ; Rigling, D. ; Ćurković Perica, Mirna | Populacijska struktura gljive Cryphonectria Parasitica Murr, Barr. u Hrvatskoj Kostajnici // 2. hrvatski botanički kongres 2007, knjiga sažetaka. | Zagreb, 2007. str. 160-161

Sažetak izlaganja sa skupa

• Repar, Jelena; Zahradka, Davor; Zahradka, Ksenija | DNA double-strand break repair and genome stability in the bacterium Deinococcus radiodurans // Arhiv za higijenu rada i toksikologiju, 75, Suppl. 1, 2024. str. 27-27

  hrcak.srce.hr

• Repar, Jelena; Zahradka, Davor; Zahradka, Ksenija | New evidence for an alternative end-joining mechanism of DNA double-strand break repair in Deinococcus radiodurans // Arhiv za higijenu rada i toksikologiju, 75, Suppl. 1, 2024. str. 194-194

  hrcak.srce.hr

• Krstin, Ljiljana ; Katanić, Zorana ; Repar, Jelena ; Ježić, Marin ; Kobaš, Ana ; Ćurković-Perica, Mirna | Molecular characterization of Chryphonectria hypovirus 1 from Slovenia // Botanica Serbica, 2018. str. 164-164

  botanicaserbica.bio.bg.ac.rs

Neobjavljeni prilog sa skupa

• Repar, Jelena | Popravak dvolančanih lomova DNA i stabilnost genoma u bakteriji Deinococcus radiodurans // DNA dvostruka uzvojnica - sedamdeset godina kasnije | Zagreb, Hrvatska, 28.11.2023-28.11.2023

  cepozir.ffrz.hr

• Repar, Jelena | Elevated rate of genome rearrangements in radiation resistant bacteria // CEGSDM 2016 - Central European Genome Stability and Dynamics Meeting | Zagreb, Hrvatska, 15.10.2016-16.10.2016

  www.irb.hr

• Repar, Jelena ; Supek, Fran ; Zahradka, Davor ; Zahradka, Ksenija | Environmentally induced increase of rearrangement rates in radiation resistant prokaryotes // SMBE 2015 - annual meeting of the Society for Molecular Biology and Evolution | Beč, Austrija, 12.07.2015-16.07.2015

Diplomski rad (sveučilišni)

• Repar, Jelena | Hipovirulentni sojevi u populaciji gljive Cryphonectria parasitica (Murr.) Barr na području Hrvatske Kostajnice / Ćurković Perica, Mirna (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2006

Doktorski rad

• Repar, Jelena | Točnost popravka DNA u stanicama bakterije Deinococcus radiodurans nakon gama-zračenja / Zahradka, Ksenija (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2012